Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p19850 Brassica napus
A06p04270 Brassica napus
A06p44650 Brassica napus
A10p31240 Brassica napus
Aa31LG10G5150 Aethionema arabicum
Aa31LG11G5810 Aethionema arabicum
Aa31LG2G8750 Aethionema arabicum
Aa31LG5G20610 Aethionema arabicum
Aa31LG5G21060 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2377 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2413 Anthoceros agrestis
Actinidia16171 Actinidia chinensis
Actinidia16696 Actinidia chinensis
Actinidia18369 Actinidia chinensis
Actinidia37753 Actinidia chinensis
Ah.02g115720 Amaranthus hybridus
Ah.02g128140 Amaranthus hybridus
Ah.06g187870 Amaranthus hybridus
Ah.13g074470 Amaranthus hybridus
AL1G55320 Arabidopsis lyrata
AL4G32020 Arabidopsis lyrata
AL5G10080 Arabidopsis lyrata
AL6G14580 Arabidopsis lyrata
Aqoxy1G00541 Aquilegia oxysepala
Aqoxy1G00645 Aquilegia oxysepala
Aqoxy3G00169 Aquilegia oxysepala
Aqoxy3G03991 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.100JB6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.21KVKL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3TDE18 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4A5SH7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.75MSWL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9CYM3P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C0TVG6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FD4NWC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FH5JI5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FPID9M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LY9F7R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M16X7S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QX2JW8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UQ25ER Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WE0YC4 Arachis hypogaea
AT1G48650 Arabidopsis thaliana
AT2G01130 Arabidopsis thaliana
AT2G35920 Arabidopsis thaliana
AT5G04895 Arabidopsis thaliana
ATR0624G142 Amborella trichopoda
ATR0691G042 Amborella trichopoda
ATR0697G124 Amborella trichopoda
Atru.chr11.328 Acer truncatum
Atru.chr12.1166 Acer truncatum
Atru.chr8.1339 Acer truncatum
Atru.chr9.935 Acer truncatum
AUR62002770 Chenopodium quinoa
AUR62014291 Chenopodium quinoa
AUR62029936 Chenopodium quinoa
AUR62030726 Chenopodium quinoa
AUR62033766 Chenopodium quinoa
AUR62034144 Chenopodium quinoa
AUR62036363 Chenopodium quinoa
AUR62037260 Chenopodium quinoa
BcaB01g03870 Brassica carinata
BcaB07g33724 Brassica carinata
BcaC01g05688 Brassica carinata
BcaC06g31331 Brassica carinata
BcaC06g32198 Brassica carinata
BcaC06g34214 Brassica carinata
BcaC08g43074 Brassica carinata
BolC3t14719H Brassica oleracea
BolC6t35468H Brassica oleracea
BolC7t43699H Brassica oleracea
BolC9t59935H Brassica oleracea
BraA03t11237Z Brassica rapa
BraA06t23630Z Brassica rapa
BraA06t27338Z Brassica rapa
BraA10t45168Z Brassica rapa
C03p23180 Brassica napus
C06p03320 Brassica napus
C07p31600 Brassica napus
C09p71860 Brassica napus
CAN.G1129.40 Capsicum annuum
CAN.G150.9 Capsicum annuum
CAN.G388.51 Capsicum annuum
CAN.G911.41 Capsicum annuum
CANSAT01G0336 Cannabis sativa
CANSAT56G2591 Cannabis sativa
CANSAT64G0792 Cannabis sativa
CANSAT80G0081 Cannabis sativa
CARHR038300 Cardamine hirsuta
CARHR130170 Cardamine hirsuta
CARHR143680 Cardamine hirsuta
CARHR208370 Cardamine hirsuta
Carub.0001s3780 Capsella rubella
Carub.0004s1767 Capsella rubella
Carub.0005s0011 Capsella rubella
Carub.0006s0382 Capsella rubella
Ca_11118_v3 Cicer arietinum L.
Ca_11680_v3 Cicer arietinum L.
Ca_17226_v3 Cicer arietinum L.
Ca_24136_v3 Cicer arietinum L.
CBR_g36488 Chara braunii
Cc00_g06480 Coffea canephora
Cc04_g06740 Coffea canephora
Cc06_g06660 Coffea canephora
Cc11_g09320 Coffea canephora
CDE01G0119 Ceratophyllum demersum
CDE04G2670 Ceratophyllum demersum
CDE11G0629 Ceratophyllum demersum
Cfa010461 Carpinus fangiana
Cfa015819 Carpinus fangiana
Cfa020045 Carpinus fangiana
Cfa025974 Carpinus fangiana
Ciclev10007274m.g Citrus clementina
Ciclev10010961m.g Citrus clementina
Ciclev10014079m.g Citrus clementina
Ciclev10024744m.g Citrus clementina
CiPaw.05G244700 Carya illinoinensis
CiPaw.09G021500 Carya illinoinensis
CiPaw.13G046500 Carya illinoinensis
CiPaw.16G089800 Carya illinoinensis
ClCG05G022130 Citrullus lanatus
ClCG06G014550 Citrullus lanatus
ClCG10G018270 Citrullus lanatus
COL.COLO4_04279 Corchorus olitorius
COL.COLO4_04583 Corchorus olitorius
COL.COLO4_06996 Corchorus olitorius
COL.COLO4_20819 Corchorus olitorius
COL.COLO4_29548 Corchorus olitorius
COL.COLO4_29549 Corchorus olitorius
Cpa.g.sc104.19 Carica papaya
Cpa.g.sc25.87 Carica papaya
Cpa.g.sc3.449 Carica papaya
Cpa.g.sc54.50 Carica papaya
Cpa.g.sc54.52 Carica papaya
Cpa.g.sc65.86 Carica papaya
Cre03.g171650 Chlamydomonas reinhardtii
Cre12.g492450 Chlamydomonas reinhardtii
CsaV3_1G004100 Cucumis sativus L.
CsaV3_3G038040 Cucumis sativus L.
CsaV3_5G034720 Cucumis sativus L.
CsaV3_5G035010 Cucumis sativus L.
CSS0005075 Camellia sinensis var. sinensis
CSS0005708 Camellia sinensis var. sinensis
CSS0008309 Camellia sinensis var. sinensis
CSS0019290 Camellia sinensis var. sinensis
CSS0034412 Camellia sinensis var. sinensis
CSS0035201 Camellia sinensis var. sinensis
CSS0038642 Camellia sinensis var. sinensis
CSS0047956 Camellia sinensis var. sinensis
DCAR_006632 Daucus carota
DCAR_011374 Daucus carota
DCAR_020695 Daucus carota
DCAR_030183 Daucus carota
Dinv04120 Davidia involucrata
Dinv04911 Davidia involucrata
Dinv10410 Davidia involucrata
Dinv12346 Davidia involucrata
Dinv16159 Davidia involucrata
Dinv31768 Davidia involucrata
Dinv31769 Davidia involucrata
Duzib068G0973 Durio zibethinus
Duzib093G0347 Durio zibethinus
Duzib093G1584 Durio zibethinus
Duzib114G0219 Durio zibethinus
Duzib205G0411 Durio zibethinus
Duzib251G0556 Durio zibethinus
ECA233G1061 Erigeron canadensis
ECA233G1271 Erigeron canadensis
ECA246G0975 Erigeron canadensis
ECA246G1971 Erigeron canadensis
ECA248G0424 Erigeron canadensis
EL10Ac4g08754 Beta vulgaris
EL10Ac5g11496 Beta vulgaris
EL10Ac5g11860 Beta vulgaris
EL10Ac6g14272 Beta vulgaris
Eucgr.B00843 Eucalyptus grandis
Eucgr.G02228 Eucalyptus grandis
Eucgr.G02652 Eucalyptus grandis
Eucgr.K01924 Eucalyptus grandis
Eucgr.L00064 Eucalyptus grandis
FAN02G1889 Fragaria x ananassa
FAN04G0273 Fragaria x ananassa
FAN04G1198 Fragaria x ananassa
FAN05G5201 Fragaria x ananassa
FAN05G5277 Fragaria x ananassa
FAN07G0295 Fragaria x ananassa
FAN08G1595 Fragaria x ananassa
FAN08G2546 Fragaria x ananassa
FAN09G1330 Fragaria x ananassa
FAN12G0825 Fragaria x ananassa
FAN12G1185 Fragaria x ananassa
FAN12G3142 Fragaria x ananassa
FAN13G2256 Fragaria x ananassa
FAN17G0174 Fragaria x ananassa
FAN18G1546 Fragaria x ananassa
FAN22G0011 Fragaria x ananassa
FvH4_4g26440 Fragaria vesca
FvH4_5g16860 Fragaria vesca
FvH4_5g28161 Fragaria vesca
FvH4_6g20440 Fragaria vesca
Glyma.02G195500 Glycine max
Glyma.05G242800 Glycine max
Glyma.08G050200 Glycine max
Glyma.08G229400 Glycine max
Glyma.09G115600 Glycine max
Glyma.10G082300 Glycine max
Glyma.10G268400 Glycine max
Glyma.15G216000 Glycine max
Glyma.15G216133 Glycine max
Glyma.20G122600 Glycine max
Gohir.A03G150000 Gossypium hirsutum
Gohir.A04G054700 Gossypium hirsutum
Gohir.A05G395700 Gossypium hirsutum
Gohir.A11G006000 Gossypium hirsutum
Gohir.D02G173000 Gossypium hirsutum
Gohir.D04G019300 Gossypium hirsutum
Gohir.D04G091800 Gossypium hirsutum
Gohir.D11G005100 Gossypium hirsutum
Gorai.005G194600 Gossypium raimondii
Gorai.007G006300 Gossypium raimondii
Gorai.009G393800 Gossypium raimondii
Gorai.012G023100 Gossypium raimondii
GSVIVG01008365001 Vitis vinifera
GSVIVG01011809001 Vitis vinifera
GSVIVG01022608001 Vitis vinifera
GSVIVG01034780001 Vitis vinifera
HanXRQChr03g0087061 Helianthus annuus
HanXRQChr11g0347141 Helianthus annuus
HanXRQChr12g0379711 Helianthus annuus
HanXRQChr14g0459231 Helianthus annuus
HanXRQChr17g0553121 Helianthus annuus
Haze_00677 Corylus avellana
Haze_03414 Corylus avellana
Haze_03483 Corylus avellana
Haze_03486 Corylus avellana
Haze_18781 Corylus avellana
Haze_18782 Corylus avellana
Hma1.2p1_0064F.1_g034630 Hydrangea macrophylla
Hma1.2p1_0064F.1_g034640 Hydrangea macrophylla
Hma1.2p1_0064F.1_g034650 Hydrangea macrophylla
Hma1.2p1_0114F.1_g055490 Hydrangea macrophylla
Hma1.2p1_1257F.1_g270740 Hydrangea macrophylla
HPP92_004871 Vanilla planifolia
HPP92_005118 Vanilla planifolia
HPP92_020256 Vanilla planifolia
Hund02343 Selenicereus undatus
Hund10861 Selenicereus undatus
Hund20703 Selenicereus undatus
Hund22256 Selenicereus undatus
Lalb_Chr01g0007651 Lupinus albus
Lalb_Chr06g0165761 Lupinus albus
Lalb_Chr06g0172661 Lupinus albus
Lalb_Chr10g0096351 Lupinus albus
Lalb_Chr16g0387251 Lupinus albus
Lj1A1055G54 Lonicera japonica
Lj1A1055T63 Lonicera japonica
Lj2g0022301 Lotus japonicus
Lj3A877G96 Lonicera japonica
Lj3C877G13 Lonicera japonica
Lj3g0019572 Lotus japonicus
Lj4g0022867 Lotus japonicus
Lj5g0006834 Lotus japonicus
Lj5g0013929 Lotus japonicus
Lj6A751G54 Lonicera japonica
Lj9C423G3 Lonicera japonica
Lj9C663G5 Lonicera japonica
Lsat_1_v5_gn_1_58301 Lactuca sativa
Lsat_1_v5_gn_5_36980 Lactuca sativa
Lsat_1_v5_gn_8_41921 Lactuca sativa
Lsat_1_v5_gn_8_981 Lactuca sativa
Manes.01G132500 Manihot esculenta
Manes.09G046500 Manihot esculenta
Manes.09G097700 Manihot esculenta
Manes.14G109000 Manihot esculenta
Mapoly0002s0122 Marchantia polymorpha
Mapoly0016s0048 Marchantia polymorpha
MBI05_g30082_MAGBIO Magnolia biondii
MBI10_g06745_MAGBIO Magnolia biondii
MBI16_g29818_MAGBIO Magnolia biondii
MCO09G071 Micromonas commoda
MCO09G395 Micromonas commoda
MCO09G422 Micromonas commoda
MD04G1078800 Malus domestica
MD06G1222500 Malus domestica
MD12G1041500 Malus domestica
MD13G1033300 Malus domestica
MD14G1231600 Malus domestica
MD16G1035100 Malus domestica
MD17G1266200 Malus domestica
Medtr1g056490 Medicago truncatula
Medtr1g109170 Medicago truncatula
Medtr8g044260 Medicago truncatula
Medtr8g045110 Medicago truncatula
Medtr8g106630 Medicago truncatula
MELO3C009546.2 Cucumis melo
MELO3C012285.2 Cucumis melo
MELO3C012311.2 Cucumis melo
MELO3C017336.2 Cucumis melo
Migut.D01594 Erythranthe guttata
Migut.L01015 Erythranthe guttata
Migut.L01826 Erythranthe guttata
Migut.N01899 Erythranthe guttata
MSTRG.5088 Avicennia marina
MSTRG.7633 Avicennia marina
Nitab4.5_0000077g0140 Nicotiana tabacum
Nitab4.5_0000881g0090 Nicotiana tabacum
Nitab4.5_0001042g0020 Nicotiana tabacum
Nitab4.5_0001042g0030 Nicotiana tabacum
Nitab4.5_0001456g0030 Nicotiana tabacum
Nitab4.5_0001613g0020 Nicotiana tabacum
Nitab4.5_0003205g0020 Nicotiana tabacum
Nitab4.5_0004597g0010 Nicotiana tabacum
Nitab4.5_0005692g0050 Nicotiana tabacum
Nitab4.5_0008335g0040 Nicotiana tabacum
Nitab4.5_0025231g0010 Nicotiana tabacum
Nn3g17997 Nelumbo nucifera
Nn4g24018 Nelumbo nucifera
Nn6g34672 Nelumbo nucifera
Nn7g37936 Nelumbo nucifera
Oeu004426.1 Olea europaea
Oeu014375.1 Olea europaea
Oeu027041.1 Olea europaea
Oeu031393.2 Olea europaea
Oeu048388.1 Olea europaea
Os01g0118100 Oryza sativa ssp. japonica
Os03g0748800 Oryza sativa ssp. japonica
Os10g0471350 Oryza sativa ssp. japonica
Peaxi162Scf00210g00107 Petunia axillaris
Peaxi162Scf00582g00818 Petunia axillaris
Peaxi162Scf00683g00330 Petunia axillaris
Peaxi162Scf00897g00210 Petunia axillaris
PGR083G2289 Punica granatum
PGR119G1922 Punica granatum
PGR142G2761 Punica granatum
PGR142G2809 Punica granatum
PGSC0003DMG400005739 Solanum tuberosum
PGSC0003DMG400021363 Solanum tuberosum
PGSC0003DMG400021378 Solanum tuberosum
Phvul.002G326400 Phaseolus vulgaris
Phvul.003G029600 Phaseolus vulgaris
Phvul.007G033900 Phaseolus vulgaris
Phvul.007G267400 Phaseolus vulgaris
Phvul.011G185300 Phaseolus vulgaris
Potri.008G014100 Populus trichocarpa
Potri.010G117800 Populus trichocarpa
Potri.010G246000 Populus trichocarpa
Potri.015G042500 Populus trichocarpa
Potri.016G068900 Populus trichocarpa
Pp3c14_12310 Physcomitrium patens
Pp3c17_19720 Physcomitrium patens
Pp3c17_19726 Physcomitrium patens
Pp3c2_32730 Physcomitrium patens
PRCOL_00000991 Prasinoderma coloniale
Prupe.1G319600 Prunus persica
Prupe.2G065300 Prunus persica
Prupe.5G227100 Prunus persica
Prupe.7G093700 Prunus persica
Psat4g189280 Pisum sativum
Psat5g029440 Pisum sativum
Psat5g029480 Pisum sativum
Psat6g093560 Pisum sativum
Psat6g108000 Pisum sativum
Psat6g223320 Pisum sativum
Psat7g006480 Pisum sativum
PSO017G7173 Papaver somniferum
PSO339G2261 Papaver somniferum
PSO339G5681 Papaver somniferum
PSO384G2105 Papaver somniferum
PSO384G3003 Papaver somniferum
QL01p003105 Quercus lobata
QL04p049887 Quercus lobata
QL04p049900 Quercus lobata
QL04p049911 Quercus lobata
QL07p036411 Quercus lobata
QL10p027154 Quercus lobata
QL10p027168 Quercus lobata
RcHm_v2.0_Chr3g0476281 Rosa chinensis
RcHm_v2.0_Chr3g0476291 Rosa chinensis
RcHm_v2.0_Chr4g0406081 Rosa chinensis
RcHm_v2.0_Chr4g0434071 Rosa chinensis
RcHm_v2.0_Chr7g0179211 Rosa chinensis
Rhsim03G0064000 Rhododendron simsii
Rhsim08G0129300 Rhododendron simsii
Rhsim09G0102100 Rhododendron simsii
RhsimUnG0121100 Rhododendron simsii
Sabra08G0008800 Salix brachista
Sabra10G0088700 Salix brachista
Sabra10G0192100 Salix brachista
Sabra15G0042800 Salix brachista
Sabra15G0044500 Salix brachista
Sabra15G0046600 Salix brachista
Sabra15G0047100 Salix brachista
Sabra15G0047200 Salix brachista
Sabra15G0048700 Salix brachista
Sabra15G0048900 Salix brachista
Sabra15G0051400 Salix brachista
Sabra15G0052900 Salix brachista
Sabra15G0054200 Salix brachista
Sabra15G0054300 Salix brachista
Sabra16G0069800 Salix brachista
SalBow1G2907 Salvia bowleyana
SalBow4G2548 Salvia bowleyana
SalBow5G0104 Salvia bowleyana
SalBow8G4202 Salvia bowleyana
SalBow8G5522 Salvia bowleyana
Sc01g0005480 Simmondsia chinensis
Sc04g0003310 Simmondsia chinensis
Sc04g0005920 Simmondsia chinensis
Sc09g0004870 Simmondsia chinensis
Sed0002613 Sechium edule
Sed0003561 Sechium edule
Sed0006886 Sechium edule
Sed0014042 Sechium edule
Sed0024986 Sechium edule
SEGI_09867 Sequoiadendron giganteum
SEGI_11112 Sequoiadendron giganteum
SEGI_13304 Sequoiadendron giganteum
SEGI_27735 Sequoiadendron giganteum
SEGI_34372 Sequoiadendron giganteum
SGA_v2.0_scaffold171G38937 Striga asiatica
SGA_v2.0_scaffold184G40014 Striga asiatica
SGA_v2.0_scaffold196G40981 Striga asiatica
SGA_v2.0_scaffold253G45123 Striga asiatica
SGA_v2.0_scaffold38G15031 Striga asiatica
SHI19040 Sapria himalayana
SHI21254 Sapria himalayana
SMO147G0323 Selaginella moellendorffii
SMO201G0114 Selaginella moellendorffii
Solyc01g006710.4 Solanum lycopersicum
Solyc01g006970.4 Solanum lycopersicum
Solyc03g118920.3 Solanum lycopersicum
Solyc04g007510.4 Solanum lycopersicum
Sopen01g002700 Solanum pennellii
Sopen01g002960 Solanum pennellii
Sopen03g037860 Solanum pennellii
Sopen04g002590 Solanum pennellii
Sp1g35630 Schrenkiella parvula
Sp2g12600 Schrenkiella parvula
Sp4g18170 Schrenkiella parvula
Sp6g37920 Schrenkiella parvula
TAR622G1127 Trochodendron aralioides
TAR623G1315 Trochodendron aralioides
TAR623G1516 Trochodendron aralioides
TAR649G0001 Trochodendron aralioides
THA.LOC104821837 Tarenaya hassleriana
THA.LOC104822546 Tarenaya hassleriana
THA.LOC104826958 Tarenaya hassleriana
Thecc.02G214800 Theobroma cacao
Thecc.03G045200 Theobroma cacao
Thecc.05G106100 Theobroma cacao
Thecc.10G125600 Theobroma cacao
Thhalv10000752m.g Eutrema salsugineum
Thhalv10011191m.g Eutrema salsugineum
Thhalv10012492m.g Eutrema salsugineum
Thhalv10016179m.g Eutrema salsugineum
Thhalv10021181m.g Eutrema salsugineum
TPR.G14595 Trifolium pratense
TPR.G2806 Trifolium pratense
TPR.G2912 Trifolium pratense
TPR.G39807 Trifolium pratense
TPR.G4926 Trifolium pratense
TPR.G7935 Trifolium pratense
TWI31G0806 Tripterygium wilfordii
TWI38G2001 Tripterygium wilfordii
TWI60G0459 Tripterygium wilfordii
TWI77G0998 Tripterygium wilfordii
TWI81G0777 Tripterygium wilfordii
unitig_52.g17388 Utricularia gibba
unitig_578.g16360 Utricularia gibba
vmacro07480 Vaccinium macrocarpon
vmacro10615 Vaccinium macrocarpon
vmacro17796 Vaccinium macrocarpon
vmacro20087 Vaccinium macrocarpon
VMungo0251G1218 Vigna mungo
VMungo0720G0133 Vigna mungo
VMungo1127G1820 Vigna mungo
Zm00001eb046110 Zea mays
Zm00001eb057210 Zea mays
Zm00001eb126070 Zea mays
Zm00001eb134320 Zea mays
Zm00001eb272370 Zea mays
Zm00001eb302340 Zea mays
Zm00001eb383390 Zea mays

User provided reference genes

Program Settings