Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p08430 Brassica napus
Aa31LG1G1480 Aethionema arabicum
Actinidia14871 Actinidia chinensis
Actinidia16638 Actinidia chinensis
Ah.02g127040 Amaranthus hybridus
AL1G25090 Arabidopsis lyrata
Aqoxy3G00330 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0188KY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5TE0FE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FS5FM4 Arachis hypogaea
AT1G13330 Arabidopsis thaliana
ATR0665G168 Amborella trichopoda
Atru.chr11.1296 Acer truncatum
AUR62002894 Chenopodium quinoa
AUR62035251 Chenopodium quinoa
BcaC05g25057 Brassica carinata
BcaC05g25064 Brassica carinata
BolC5t29739H Brassica oleracea
BolC5t29750H Brassica oleracea
BraA06t24039Z Brassica rapa
C05p09970 Brassica napus
C05p10030 Brassica napus
CAN.G656.28 Capsicum annuum
CAN.G706.23 Capsicum annuum
CANSAT56G1672 Cannabis sativa
CARHR013710 Cardamine hirsuta
Carub.0001s1306 Capsella rubella
Ca_28012_v3 Cicer arietinum L.
CBR_g3130 Chara braunii
Cc11_g10340 Coffea canephora
CDE05G2755 Ceratophyllum demersum
Ciclev10032679m.g Citrus clementina
CiPaw.15G005500 Carya illinoinensis
ClCG05G022860 Citrullus lanatus
COL.COLO4_07900 Corchorus olitorius
Cpa.g.sc1.190 Carica papaya
Cre06.g284400 Chlamydomonas reinhardtii
CsaV3_5G034170 Cucumis sativus L.
CSS0004457 Camellia sinensis var. sinensis
DCAR_023669 Daucus carota
Dinv21110 Davidia involucrata
Duzib251G0691 Durio zibethinus
ECA233G4186 Erigeron canadensis
EL10Ac6g14443 Beta vulgaris
Eucgr.G02335 Eucalyptus grandis
FAN07G1824 Fragaria x ananassa
FAN12G1265 Fragaria x ananassa
FAN12G2251 Fragaria x ananassa
FAN22G1329 Fragaria x ananassa
Glyma.01G083100 Glycine max
Glyma.08G260400 Glycine max
Gohir.A13G053700 Gossypium hirsutum
Gohir.D13G071200 Gossypium hirsutum
Gorai.013G081500 Gossypium raimondii
GSVIVG01011919001 Vitis vinifera
HanXRQChr08g0214231 Helianthus annuus
Haze_17460 Corylus avellana
HPP92_011092 Vanilla planifolia
HPP92_011108 Vanilla planifolia
Hund25084 Selenicereus undatus
Lalb_Chr17g0342031 Lupinus albus
Lj2g0004168 Lotus japonicus
Lj3C1017T15 Lonicera japonica
Lsat_1_v5_gn_8_38900 Lactuca sativa
Manes.14G100100 Manihot esculenta
Mapoly0015s0151 Marchantia polymorpha
MCO07G460 Micromonas commoda
MD13G1044000 Malus domestica
MD16G1044800 Malus domestica
Medtr5g055150 Medicago truncatula
MELO3C012231.2 Cucumis melo
Migut.L01079 Erythranthe guttata
MSTRG.13515 Avicennia marina
Nitab4.5_0003823g0050 Nicotiana tabacum
Nitab4.5_0004895g0100 Nicotiana tabacum
Nn3g17799 Nelumbo nucifera
Oeu033300.1 Olea europaea
Peaxi162Scf00382g00128 Petunia axillaris
PGR119G2132 Punica granatum
PGSC0003DMG402012965 Solanum tuberosum
Phvul.002G082400 Phaseolus vulgaris
Potri.008G118800 Populus trichocarpa
Potri.010G127101 Populus trichocarpa
Pp3c23_21510 Physcomitrium patens
PRCOL_00000208 Prasinoderma coloniale
Prupe.1G308500 Prunus persica
Psat2g093000 Pisum sativum
PSO017G5158 Papaver somniferum
PSO478G1614 Papaver somniferum
QL01p043991 Quercus lobata
RcHm_v2.0_Chr4g0435501 Rosa chinensis
Rhsim12G0082400 Rhododendron simsii
Sabra08G0090200 Salix brachista
SalBow8G1483 Salvia bowleyana
Sc11g0003240 Simmondsia chinensis
Sc11g0003300 Simmondsia chinensis
Sed0012161 Sechium edule
SEGI_38068 Sequoiadendron giganteum
SGA_v2.0_scaffold124G33553 Striga asiatica
SHI33974 Sapria himalayana
SMO203G0092 Selaginella moellendorffii
Solyc05g009560.4 Solanum lycopersicum
Sopen05g005370 Solanum pennellii
Sp1g11840 Schrenkiella parvula
TAR622G0049 Trochodendron aralioides
TAR629G1122 Trochodendron aralioides
THA.LOC104805251 Tarenaya hassleriana
Thecc.02G357700 Theobroma cacao
Thhalv10008697m.g Eutrema salsugineum
TPR.G38250 Trifolium pratense
TWI79G1443 Tripterygium wilfordii
unitig_27.g25247 Utricularia gibba
vmacro01371 Vaccinium macrocarpon
VMungo1215G2393 Vigna mungo
Zm00001eb216450 Zea mays

User provided reference genes

Program Settings