Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p32350 Brassica napus
Aa31LG5G10920 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1421 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3616 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.5504 Anthoceros agrestis
Ah.09g228170 Amaranthus hybridus
AL3G10340 Arabidopsis lyrata
Aqoxy3G01736 Aquilegia oxysepala
Aqoxy5G03493 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AY8PV2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HCN1MH Arachis hypogaea
AT3G01790 Arabidopsis thaliana
ATR0723G078 Amborella trichopoda
Atru.chr6.2514 Acer truncatum
AUR62029058 Chenopodium quinoa
AUR62034098 Chenopodium quinoa
BcaNung05589 Brassica carinata
BolC3t16209H Brassica oleracea
BraA03t12405Z Brassica rapa
C03p39400 Brassica napus
CAN.G1333.9 Capsicum annuum
CANSAT64G2788 Cannabis sativa
CARHR075140 Cardamine hirsuta
Carub.0003s0027 Capsella rubella
Ca_04418_v3 Cicer arietinum L.
Ca_16345_v3 Cicer arietinum L.
CBR_g2974 Chara braunii
Cc07_g00580 Coffea canephora
CDE05G0827 Ceratophyllum demersum
Ciclev10016747m.g Citrus clementina
CiPaw.03G052400 Carya illinoinensis
CiPaw.04G034600 Carya illinoinensis
ClCG01G016260 Citrullus lanatus
COL.COLO4_13732 Corchorus olitorius
Cre09.g405200 Chlamydomonas reinhardtii
CsaV3_6G042550 Cucumis sativus L.
CSS0001891 Camellia sinensis var. sinensis
CSS0030746 Camellia sinensis var. sinensis
CSS0048340 Camellia sinensis var. sinensis
Dinv33365 Davidia involucrata
Dinv37839 Davidia involucrata
Duzib041G0186 Durio zibethinus
Duzib093G1178 Durio zibethinus
ECA232G1699 Erigeron canadensis
EL10Ac8g19198 Beta vulgaris
Eucgr.J02309 Eucalyptus grandis
FAN05G0361 Fragaria x ananassa
FAN09G4421 Fragaria x ananassa
FAN12G0063 Fragaria x ananassa
FAN12G0306 Fragaria x ananassa
FAN14G1531 Fragaria x ananassa
FvH4_4g11850 Fragaria vesca
FvH4_6g53020 Fragaria vesca
Glyma.19G075200 Glycine max
Glyma.19G180500 Glycine max
Glyma.20G058200 Glycine max
Gohir.A05G246900 Gossypium hirsutum
Gohir.D05G248400 Gossypium hirsutum
Gorai.009G259400 Gossypium raimondii
GSVIVG01001821001 Vitis vinifera
HanXRQChr08g0233931 Helianthus annuus
HanXRQChr17g0550171 Helianthus annuus
Haze_14834 Corylus avellana
HPP92_011547 Vanilla planifolia
Hund25939 Selenicereus undatus
Lalb_Chr05g0227671 Lupinus albus
Lj3A195G12 Lonicera japonica
LjContig00102g0027903 Lotus japonicus
Lsat_1_v5_gn_4_185480 Lactuca sativa
Manes.17G105900 Manihot esculenta
Mapoly0030s0026 Marchantia polymorpha
MBI10_g24386_MAGBIO Magnolia biondii
MCO07G681 Micromonas commoda
MD17G1015300 Malus domestica
Medtr3g082760 Medicago truncatula
MELO3C007496.2 Cucumis melo
Migut.G01349 Erythranthe guttata
MSTRG.15560 Avicennia marina
Nitab4.5_0000401g0090 Nicotiana tabacum
Nitab4.5_0006964g0020 Nicotiana tabacum
Nn1g08708 Nelumbo nucifera
Nn3g20286 Nelumbo nucifera
Oeu013953.1 Olea europaea
Oeu035209.1 Olea europaea
Os05g0243100 Oryza sativa ssp. japonica
Os05g0243200 Oryza sativa ssp. japonica
Os05g0243300 Oryza sativa ssp. japonica
Os08g0162033 Oryza sativa ssp. japonica
Peaxi162Scf00047g00333 Petunia axillaris
Peaxi162Scf00318g00721 Petunia axillaris
Peaxi162Scf00753g00428 Petunia axillaris
PGR083G2585 Punica granatum
PGSC0003DMG400026415 Solanum tuberosum
Phvul.010G007100 Phaseolus vulgaris
Potri.001G334000 Populus trichocarpa
Potri.017G066000 Populus trichocarpa
Pp3c1_3220 Physcomitrium patens
PRCOL_00005998 Prasinoderma coloniale
Prupe.3G148400 Prunus persica
Psat5g104400 Pisum sativum
PSO063G5361 Papaver somniferum
PSO782G0616 Papaver somniferum
QL02p072441 Quercus lobata
RcHm_v2.0_Chr2g0174761 Rosa chinensis
RcHm_v2.0_Chr3g0455021 Rosa chinensis
RcHm_v2.0_Chr4g0409361 Rosa chinensis
Sabra17G0059400 Salix brachista
Sabra17G0061400 Salix brachista
SalBow1G1604 Salvia bowleyana
SalBow7G1090 Salvia bowleyana
Sc18g0002160 Simmondsia chinensis
Sed0017898 Sechium edule
SEGI_06133 Sequoiadendron giganteum
SEGI_22376 Sequoiadendron giganteum
SEGI_32901 Sequoiadendron giganteum
SGA_v2.0_scaffold154G37161 Striga asiatica
SGA_v2.0_scaffold47G17577 Striga asiatica
SHI03897 Sapria himalayana
SMO117G0155 Selaginella moellendorffii
Solyc09g092090.4 Solanum lycopersicum
Sopen09g034960 Solanum pennellii
Sp3g00270 Schrenkiella parvula
TAR625G0935 Trochodendron aralioides
TAR629G0540 Trochodendron aralioides
TAR633G2523 Trochodendron aralioides
THA.LOC104809576 Tarenaya hassleriana
THA.LOC104813780 Tarenaya hassleriana
Thecc.04G030300 Theobroma cacao
Thecc.08G161400 Theobroma cacao
Thhalv10021543m.g Eutrema salsugineum
TWI23G0028 Tripterygium wilfordii
TWI59G1157 Tripterygium wilfordii
unitig_0.g789 Utricularia gibba
vmacro18324 Vaccinium macrocarpon
VMungo1127G0708 Vigna mungo
Zm00001eb144650 Zea mays
Zm00001eb365700 Zea mays

User provided reference genes

Program Settings