Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p31700 Brassica napus
A07p23420 Brassica napus
Aa31LG1G17040 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis
Actinidia16961 Actinidia chinensis
Ah.02g124420 Amaranthus hybridus
AL8G42430 Arabidopsis lyrata
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea
AT5G64930 Arabidopsis thaliana
ATR0171G039 Amborella trichopoda
Atru.chr4.372 Acer truncatum
Atru.chr4.373 Acer truncatum
AUR62003314 Chenopodium quinoa
AUR62016269 Chenopodium quinoa
BcaB02g07604 Brassica carinata
BcaB02g09842 Brassica carinata
BcaB04g20000 Brassica carinata
BcaC01g02724 Brassica carinata
BcaC08g44843 Brassica carinata
BolC3t18387H Brassica oleracea
BolC6t37597H Brassica oleracea
BraA06t26105Z Brassica rapa
BraA07t30005Z Brassica rapa
C03p61260 Brassica napus
C06p24500 Brassica napus
CAN.G1854.1 Capsicum annuum
CANSAT01G0537 Cannabis sativa
CARHR293840 Cardamine hirsuta
Carub.0008s2576 Capsella rubella
Ca_16888_v3 Cicer arietinum L.
Ca_17699_v3 Cicer arietinum L.
CBR_g4593 Chara braunii
Cc07_g16050 Coffea canephora
CDE05G2725 Ceratophyllum demersum
Cfa002745 Carpinus fangiana
Ciclev10025244m.g Citrus clementina
CiPaw.03G134900 Carya illinoinensis
CiPaw.04G092600 Carya illinoinensis
ClCG01G019270 Citrullus lanatus
COL.COLO4_11020 Corchorus olitorius
Cpa.g.sc196.2 Carica papaya
Cpa.g.sc196.3 Carica papaya
CsaV3_6G045960 Cucumis sativus L.
CSS0006585 Camellia sinensis var. sinensis
CSS0010100 Camellia sinensis var. sinensis
CSS0029975 Camellia sinensis var. sinensis
CSS0047108 Camellia sinensis var. sinensis
DCAR_014256 Daucus carota
Dinv42703 Davidia involucrata
Duzib147G0355 Durio zibethinus
ECA238G1011 Erigeron canadensis
EL10Ac6g14744 Beta vulgaris
Eucgr.H04830 Eucalyptus grandis
FAN19G2885 Fragaria x ananassa
FAN19G2927 Fragaria x ananassa
FAN23G2837 Fragaria x ananassa
FAN23G3004 Fragaria x ananassa
FAN26G0674 Fragaria x ananassa
FAN26G2475 Fragaria x ananassa
FAN28G0567 Fragaria x ananassa
FAN28G1315 Fragaria x ananassa
FAN28G2993 Fragaria x ananassa
FvH4_1g22140 Fragaria vesca
FvH4_1g24620 Fragaria vesca
Glyma.06G145800 Glycine max
Gohir.A02G134000 Gossypium hirsutum
Gohir.D03G045400 Gossypium hirsutum
Gorai.003G046500 Gossypium raimondii
GSVIVG01022215001 Vitis vinifera
HanXRQChr14g0446211 Helianthus annuus
HanXRQChr15g0471901 Helianthus annuus
Haze_25032 Corylus avellana
HPP92_005876 Vanilla planifolia
Hund19664 Selenicereus undatus
Lalb_Chr11g0068011 Lupinus albus
Lj1g0026570 Lotus japonicus
Lj4A878G34 Lonicera japonica
Lsat_1_v5_gn_2_65461 Lactuca sativa
Lsat_1_v5_gn_6_47440 Lactuca sativa
Manes.12G141400 Manihot esculenta
Manes.13G077600 Manihot esculenta
Mapoly0002s0001 Marchantia polymorpha
Mapoly0107s0002 Marchantia polymorpha
Mapoly0483s0001 Marchantia polymorpha
MBI03_g11138_MAGBIO Magnolia biondii
MCO05G196 Micromonas commoda
MD01G1017700 Malus domestica
Medtr3g094760 Medicago truncatula
MELO3C007802.2 Cucumis melo
MELO3C007803.2 Cucumis melo
Migut.L00078 Erythranthe guttata
Nitab4.5_0000156g0160 Nicotiana tabacum
Nitab4.5_0002843g0020 Nicotiana tabacum
Nn1g00054 Nelumbo nucifera
Nn1g00055 Nelumbo nucifera
Nn1g05196 Nelumbo nucifera
Nn5g28924 Nelumbo nucifera
Oeu056486.1 Olea europaea
Os02g0770100 Oryza sativa ssp. japonica
Peaxi162Scf01006g00315 Petunia axillaris
PGR102G0173 Punica granatum
PGSC0003DMG401012957 Solanum tuberosum
PGSC0003DMG402012957 Solanum tuberosum
Phvul.009G140300 Phaseolus vulgaris
Potri.005G083600 Populus trichocarpa
Potri.007G082100 Populus trichocarpa
Pp3c21_530 Physcomitrium patens
Pp3c22_5670 Physcomitrium patens
Prupe.6G175000 Prunus persica
Psat5g067160 Pisum sativum
Psat7g052040 Pisum sativum
PSO541G1244 Papaver somniferum
PSO675G5310 Papaver somniferum
QL06p032353 Quercus lobata
QL93p0275_0011 Quercus lobata
RcHm_v2.0_Chr2g0116221 Rosa chinensis
Rhsim10G0134100 Rhododendron simsii
Rhsim10G0151500 Rhododendron simsii
Sabra05G0068700 Salix brachista
Sabra07G0068900 Salix brachista
SalBow5G3891 Salvia bowleyana
SalBow5G4162 Salvia bowleyana
Sc03g0004250 Simmondsia chinensis
Sed0009808 Sechium edule
SEGI_09258 Sequoiadendron giganteum
SGA_v2.0_scaffold47G17714 Striga asiatica
SGA_v2.0_scaffold47G17717 Striga asiatica
SHI11672 Sapria himalayana
Solyc04g054170.4 Solanum lycopersicum
Sopen04g023630 Solanum pennellii
Sp2g28010 Schrenkiella parvula
TAR376G0315 Trochodendron aralioides
TAR625G0980 Trochodendron aralioides
THA.LOC104818481 Tarenaya hassleriana
Thecc.01G111600 Theobroma cacao
Thhalv10003912m.g Eutrema salsugineum
Thhalv10005311m.g Eutrema salsugineum
Thhalv10019768m.g Eutrema salsugineum
TPR.G2194 Trifolium pratense
TPR.G6951 Trifolium pratense
TWI53G2111 Tripterygium wilfordii
TWI74G1183 Tripterygium wilfordii
unitig_88.g27735 Utricularia gibba
vmacro12909 Vaccinium macrocarpon
VMungo1309G0633 Vigna mungo
VMungo1309G1623 Vigna mungo
Zm00001eb193490 Zea mays
Zm00001eb364640 Zea mays

User provided reference genes

Program Settings