Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p05770 Brassica napus
A10p25160 Brassica napus
Aa31LG3G14630 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis
Actinidia06316 Actinidia chinensis
Actinidia39373 Actinidia chinensis
Actinidia39374 Actinidia chinensis
AL6G23620 Arabidopsis lyrata
Aqoxy2G00086 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea
AT5G13030 Arabidopsis thaliana
ATR0605G198 Amborella trichopoda
Atru.chr3.2433 Acer truncatum
Atru.chr3.2434 Acer truncatum
AUR62000053 Chenopodium quinoa
AUR62019225 Chenopodium quinoa
BcaB01g05381 Brassica carinata
BolC3t13178H Brassica oleracea
BolC9t59244H Brassica oleracea
BraA01t00507Z Brassica rapa
BraA03t09916Z Brassica rapa
BraA10t44578Z Brassica rapa
C03p06720 Brassica napus
C09p64070 Brassica napus
CAN.G575.41 Capsicum annuum
CAN.G649.14 Capsicum annuum
CANSAT54G1702 Cannabis sativa
CARHR200430 Cardamine hirsuta
Carub.0006s1120 Capsella rubella
Ca_11408_v3 Cicer arietinum L.
CBR_g38091 Chara braunii
Cc01_g03810 Coffea canephora
CDE04G3728 Ceratophyllum demersum
Cfa025573 Carpinus fangiana
Ciclev10014571m.g Citrus clementina
CiPaw.13G168300 Carya illinoinensis
CiPaw.14G126500 Carya illinoinensis
ClCG03G013650 Citrullus lanatus
COL.COLO4_10388 Corchorus olitorius
Cpa.g.sc117.3 Carica papaya
Cre02.g108250 Chlamydomonas reinhardtii
Cre16.g648900 Chlamydomonas reinhardtii
CsaV3_1G042400 Cucumis sativus L.
CSS0046641 Camellia sinensis var. sinensis
CSS0049397 Camellia sinensis var. sinensis
DCAR_002029 Daucus carota
Dinv08059 Davidia involucrata
Dinv36315 Davidia involucrata
Duzib168G2002 Durio zibethinus
ECA233G2530 Erigeron canadensis
ECA248G2677 Erigeron canadensis
EL10Ac4g10322 Beta vulgaris
Eucgr.B02600 Eucalyptus grandis
FAN11G1732 Fragaria x ananassa
FAN16G3698 Fragaria x ananassa
FAN21G0229 Fragaria x ananassa
FAN25G0197 Fragaria x ananassa
FvH4_3g43840 Fragaria vesca
FvH4_3g45150 Fragaria vesca
Glyma.10G296266 Glycine max
Glyma.20G246800 Glycine max
Gohir.A05G066800 Gossypium hirsutum
Gohir.A08G012900 Gossypium hirsutum
Gohir.D05G069700 Gossypium hirsutum
Gohir.D08G023300 Gossypium hirsutum
Gorai.004G018600 Gossypium raimondii
Gorai.009G070700 Gossypium raimondii
GSVIVG01025352001 Vitis vinifera
HanXRQChr02g0056721 Helianthus annuus
HanXRQChr11g0345481 Helianthus annuus
HanXRQChr13g0404241 Helianthus annuus
HanXRQChr13g0426091 Helianthus annuus
Haze_23030 Corylus avellana
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla
HPP92_018953 Vanilla planifolia
Hund21812 Selenicereus undatus
Lalb_Chr02g0144391 Lupinus albus
Lalb_Chr21g0307631 Lupinus albus
Lj1A436G11 Lonicera japonica
Lj1A436T13 Lonicera japonica
Lj1C433G5 Lonicera japonica
Lj1P432T25 Lonicera japonica
Lj2C671G7 Lonicera japonica
Lj5g0022671 Lotus japonicus
Lsat_1_v5_gn_1_68000 Lactuca sativa
Lsat_1_v5_gn_4_11801 Lactuca sativa
Lsat_1_v5_gn_6_49801 Lactuca sativa
Manes.06G169401 Manihot esculenta
Manes.14G015300 Manihot esculenta
Mapoly0063s0012 Marchantia polymorpha
MBI04_g37845_MAGBIO Magnolia biondii
MBI04_g46409_MAGBIO Magnolia biondii
MCO09G196 Micromonas commoda
MD03G1018700 Malus domestica
MD11G1020000 Malus domestica
MD11G1020700 Malus domestica
Medtr1g116875 Medicago truncatula
MELO3C015675.2 Cucumis melo
Migut.N02286 Erythranthe guttata
MSTRG.12487 Avicennia marina
MSTRG.18400 Avicennia marina
Nitab4.5_0001146g0130 Nicotiana tabacum
Nitab4.5_0001568g0150 Nicotiana tabacum
Nitab4.5_0004389g0050 Nicotiana tabacum
Nn2g15648 Nelumbo nucifera
Nn7g36025 Nelumbo nucifera
Oeu024459.1 Olea europaea
Oeu043306.1 Olea europaea
Oeu055814.1 Olea europaea
Os06g0320700 Oryza sativa ssp. japonica
Peaxi162Scf00062g01417 Petunia axillaris
Peaxi162Scf00403g00212 Petunia axillaris
PGR119G0026 Punica granatum
PGR119G0420 Punica granatum
PGSC0003DMG400032205 Solanum tuberosum
Phvul.007G003400 Phaseolus vulgaris
Potri.001G013900 Populus trichocarpa
Pp3c9_22190 Physcomitrium patens
PRCOL_00001378 Prasinoderma coloniale
PRCOL_00005150 Prasinoderma coloniale
PRCOL_00005494 Prasinoderma coloniale
Prupe.6G017800 Prunus persica
Psat3g017080 Pisum sativum
Psat3g137640 Pisum sativum
Psat6g242880 Pisum sativum
PSO339G4050 Papaver somniferum
PSO384G1641 Papaver somniferum
QL01p009105 Quercus lobata
RcHm_v2.0_Chr5g0079011 Rosa chinensis
RcHm_v2.0_Chr5g0079021 Rosa chinensis
RcHm_v2.0_Chr5g0079031 Rosa chinensis
RcHm_v2.0_Chr5g0079041 Rosa chinensis
RcHm_v2.0_Chr5g0079321 Rosa chinensis
Rhsim01G0187100 Rhododendron simsii
Sabra01G0010200 Salix brachista
SalBow2G0171 Salvia bowleyana
Sc16g0011910 Simmondsia chinensis
Sed0006721 Sechium edule
Sed0015121 Sechium edule
SEGI_31462 Sequoiadendron giganteum
SEGI_38661 Sequoiadendron giganteum
SGA_v2.0_scaffold3G01554 Striga asiatica
SHI03509 Sapria himalayana
SMO134G0253 Selaginella moellendorffii
Solyc01g006490.4 Solanum lycopersicum
Solyc12g100200.2 Solanum lycopersicum
Sopen01g002470 Solanum pennellii
Sopen12g034830 Solanum pennellii
Sp6g30940 Schrenkiella parvula
TAR362G0095 Trochodendron aralioides
TAR362G1239 Trochodendron aralioides
TAR369G0071 Trochodendron aralioides
TAR369G0199 Trochodendron aralioides
TAR369G0705 Trochodendron aralioides
TAR623G1465 Trochodendron aralioides
TAR633G0263 Trochodendron aralioides
THA.LOC104811125 Tarenaya hassleriana
Thecc.09G219300 Theobroma cacao
Thhalv10012956m.g Eutrema salsugineum
TPR.G14880 Trifolium pratense
TPR.G25082 Trifolium pratense
TPR.G31187 Trifolium pratense
TPR.G8893 Trifolium pratense
TWI32G0563 Tripterygium wilfordii
TWI60G0817 Tripterygium wilfordii
unitig_22.g6210 Utricularia gibba
vmacro12703 Vaccinium macrocarpon
VMungo0720G1960 Vigna mungo
VMungo0720G3038 Vigna mungo
Zm00001eb381770 Zea mays

User provided reference genes

Program Settings