Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p05190 Brassica napus
A09p47600 Brassica napus
Aa31sc64G70 Aethionema arabicum
Actinidia09090 Actinidia chinensis
Actinidia19983 Actinidia chinensis
Ah.11g049960 Amaranthus hybridus
AL5G35730 Arabidopsis lyrata
Aqoxy5G00345 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea
AT3G54650 Arabidopsis thaliana
ATR0665G431 Amborella trichopoda
Atru.chr5.1570 Acer truncatum
AUR62011940 Chenopodium quinoa
AUR62027361 Chenopodium quinoa
AUR62032255 Chenopodium quinoa
BcaB01g00171 Brassica carinata
BcaB02g08450 Brassica carinata
BcaC02g09055 Brassica carinata
BcaC07g39799 Brassica carinata
BcaC08g44483 Brassica carinata
BolC4t25368H Brassica oleracea
BolC8t50591H Brassica oleracea
BraA04t16229Z Brassica rapa
BraA09t40216Z Brassica rapa
C04p37930 Brassica napus
C08p29800 Brassica napus
CAN.G1259.1 Capsicum annuum
CANSAT01G0779 Cannabis sativa
CARHR164560 Cardamine hirsuta
Carub.0005s2125 Capsella rubella
Ca_09715_v3 Cicer arietinum L.
CBR_g27883 Chara braunii
CBR_g29330 Chara braunii
Cc01_g18840 Coffea canephora
CDE02G4505 Ceratophyllum demersum
CDE06G0297 Ceratophyllum demersum
Cfa002328 Carpinus fangiana
Ciclev10019274m.g Citrus clementina
CiPaw.03G257500 Carya illinoinensis
CiPaw.04G182000 Carya illinoinensis
ClCG09G007540 Citrullus lanatus
COL.COLO4_06074 Corchorus olitorius
Cpa.g.sc52.91 Carica papaya
CsaV3_7G027590 Cucumis sativus L.
CSS0003244 Camellia sinensis var. sinensis
CSS0008019 Camellia sinensis var. sinensis
DCAR_018449 Daucus carota
Dinv22479 Davidia involucrata
Dinv34570 Davidia involucrata
Duzib133G0161 Durio zibethinus
Duzib138G0995 Durio zibethinus
Duzib211G0616 Durio zibethinus
ECA247G4082 Erigeron canadensis
EL10Ac5g10476 Beta vulgaris
Eucgr.B01491 Eucalyptus grandis
FAN15G1994 Fragaria x ananassa
FAN15G3229 Fragaria x ananassa
FAN20G1895 Fragaria x ananassa
FAN24G3385 Fragaria x ananassa
FAN27G3048 Fragaria x ananassa
FvH4_2g22510 Fragaria vesca
Glyma.02G142300 Glycine max
Glyma.03G158900 Glycine max
Glyma.10G032000 Glycine max
Glyma.19G161300 Glycine max
Glyma.20G064301 Glycine max
Gohir.A07G209100 Gossypium hirsutum
Gohir.A07G209200 Gossypium hirsutum
Gohir.D07G215000 Gossypium hirsutum
Gohir.D07G215300 Gossypium hirsutum
Gorai.001G243000 Gossypium raimondii
Gorai.001G243100 Gossypium raimondii
GSVIVG01000724001 Vitis vinifera
HanXRQChr10g0281461 Helianthus annuus
HanXRQChr15g0467051 Helianthus annuus
Haze_24534 Corylus avellana
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla
HPP92_015890 Vanilla planifolia
HPP92_015894 Vanilla planifolia
HPP92_026284 Vanilla planifolia
Hund02880 Selenicereus undatus
Lalb_Chr02g0142411 Lupinus albus
Lalb_Chr21g0306291 Lupinus albus
Lj1g0005140 Lotus japonicus
Lj2A1159T22 Lonicera japonica
Lj2A239G33 Lonicera japonica
Lj5g0016746 Lotus japonicus
Lsat_1_v5_gn_5_80480 Lactuca sativa
Lsat_1_v5_gn_9_9980 Lactuca sativa
Manes.01G201500 Manihot esculenta
MBI11_g02060_MAGBIO Magnolia biondii
MD05G1205600 Malus domestica
MD10G1192800 Malus domestica
Medtr0878s0020 Medicago truncatula
Medtr1g070515 Medicago truncatula
Medtr2g066740 Medicago truncatula
MELO3C015764.2 Cucumis melo
Migut.D00375 Erythranthe guttata
MSTRG.21511 Avicennia marina
Nitab4.5_0000187g0210 Nicotiana tabacum
Nitab4.5_0001044g0050 Nicotiana tabacum
Nitab4.5_0003053g0010 Nicotiana tabacum
Nitab4.5_0004899g0010 Nicotiana tabacum
Nn1g02572 Nelumbo nucifera
Nn3g19505 Nelumbo nucifera
Oeu009234.1 Olea europaea
Oeu010137.1 Olea europaea
Oeu025793.1 Olea europaea
Oeu039511.1 Olea europaea
Os03g0633100 Oryza sativa ssp. japonica
Os03g0633400 Oryza sativa ssp. japonica
Os12g0601000 Oryza sativa ssp. japonica
Peaxi162Scf00049g00208 Petunia axillaris
Peaxi162Scf01311g00024 Petunia axillaris
PGR119G1275 Punica granatum
PGSC0003DMG400019300 Solanum tuberosum
PGSC0003DMG400020140 Solanum tuberosum
Phvul.001G156800 Phaseolus vulgaris
Phvul.007G176500 Phaseolus vulgaris
Potri.002G044800 Populus trichocarpa
Potri.005G218400 Populus trichocarpa
PRCOL_00001919 Prasinoderma coloniale
Prupe.8G232000 Prunus persica
Psat6g057800 Pisum sativum
Psat7g221000 Pisum sativum
Psat7g235240 Pisum sativum
PSO210G5962 Papaver somniferum
PSO591G0166 Papaver somniferum
PSO832G0351 Papaver somniferum
QL12p042733 Quercus lobata
RcHm_v2.0_Chr6g0289551 Rosa chinensis
Rhsim01G0269600 Rhododendron simsii
Rhsim04G0076300 Rhododendron simsii
RhsimUnG0001000 Rhododendron simsii
Sabra02G0035900 Salix brachista
Sabra05G0167500 Salix brachista
SalBow4G0878 Salvia bowleyana
Sc24g0004260 Simmondsia chinensis
Sc24g0004300 Simmondsia chinensis
Sed0014339 Sechium edule
Sed0019687 Sechium edule
SEGI_41615 Sequoiadendron giganteum
SGA_v2.0_scaffold138G35275 Striga asiatica
SGA_v2.0_scaffold1G00558 Striga asiatica
SHI09942 Sapria himalayana
Solyc06g084060.3 Solanum lycopersicum
Solyc09g065880.4 Solanum lycopersicum
Sopen06g035450 Solanum pennellii
Sopen09g027670 Solanum pennellii
Sp5g07800 Schrenkiella parvula
TAR362G1267 Trochodendron aralioides
TAR633G0766 Trochodendron aralioides
THA.LOC104804696 Tarenaya hassleriana
THA.LOC104824390 Tarenaya hassleriana
Thecc.01G267300 Theobroma cacao
Thhalv10010227m.g Eutrema salsugineum
TPR.G35731 Trifolium pratense
TWI12G0443 Tripterygium wilfordii
TWI18G1228 Tripterygium wilfordii
unitig_22.g5466 Utricularia gibba
vmacro14871 Vaccinium macrocarpon
VMungo0720G0425 Vigna mungo
VMungo1383G3440 Vigna mungo
Zm00001eb031170 Zea mays
Zm00001eb051080 Zea mays
Zm00001eb135530 Zea mays

User provided reference genes

Program Settings