Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p01980 Brassica napus
A05p04250 Brassica napus
A09p52290 Brassica napus
Aa31LG1G25800 Aethionema arabicum
Actinidia03474 Actinidia chinensis
Actinidia03477 Actinidia chinensis
Actinidia29461 Actinidia chinensis
Actinidia29462 Actinidia chinensis
Actinidia36638 Actinidia chinensis
Ah.07g203370 Amaranthus hybridus
Ah.13g073110 Amaranthus hybridus
AL4G43020 Arabidopsis lyrata
AL5G42130 Arabidopsis lyrata
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea
AT2G44140 Arabidopsis thaliana
AT3G59950 Arabidopsis thaliana
ATR0706G248 Amborella trichopoda
ATR0807G053 Amborella trichopoda
ATR0807G232 Amborella trichopoda
Atru.chr3.2025 Acer truncatum
Atru.chr3.2624 Acer truncatum
AUR62002510 Chenopodium quinoa
AUR62023683 Chenopodium quinoa
BcaB02g08204 Brassica carinata
BcaB02g08917 Brassica carinata
BcaC02g10096 Brassica carinata
BcaC02g12335 Brassica carinata
BcaC07g40400 Brassica carinata
BcaC07g40539 Brassica carinata
BolC4t22136H Brassica oleracea
BolC4t24846H Brassica oleracea
BolC8t51099H Brassica oleracea
BraA04t15923Z Brassica rapa
BraA05t19410Z Brassica rapa
BraA09t40658Z Brassica rapa
C04p05030 Brassica napus
C04p32840 Brassica napus
C08p34940 Brassica napus
C08p34950 Brassica napus
CAN.G140.48 Capsicum annuum
CANSAT78G0639 Cannabis sativa
CARHR139300 Cardamine hirsuta
CARHR170260 Cardamine hirsuta
Carub.0004s2669 Capsella rubella
Carub.0005s2667 Capsella rubella
Ca_08048_v3 Cicer arietinum L.
Ca_08054_v3 Cicer arietinum L.
CBR_g21952 Chara braunii
CBR_g50173 Chara braunii
CDE04G0030 Ceratophyllum demersum
CDE06G1594 Ceratophyllum demersum
Cfa000589 Carpinus fangiana
Cfa022146 Carpinus fangiana
Ciclev10019906m.g Citrus clementina
CiPaw.09G068100 Carya illinoinensis
CiPaw.10G057600 Carya illinoinensis
ClCG06G009970 Citrullus lanatus
ClCG06G010000 Citrullus lanatus
COL.COLO4_06916 Corchorus olitorius
Cpa.g.sc9.235 Carica papaya
Cre12.g510100 Chlamydomonas reinhardtii
CsaV3_2G011360 Cucumis sativus L.
CSS0003826 Camellia sinensis var. sinensis
CSS0004368 Camellia sinensis var. sinensis
CSS0048139 Camellia sinensis var. sinensis
DCAR_023584 Daucus carota
DCAR_026793 Daucus carota
Dinv18636 Davidia involucrata
Dinv28066 Davidia involucrata
Duzib147G1378 Durio zibethinus
Duzib264G0158 Durio zibethinus
ECA232G0201 Erigeron canadensis
ECA233G0032 Erigeron canadensis
EL10Ac3g06192 Beta vulgaris
Eucgr.K03157 Eucalyptus grandis
FAN15G0687 Fragaria x ananassa
FAN20G2928 Fragaria x ananassa
FAN24G3388 Fragaria x ananassa
FAN27G1923 Fragaria x ananassa
FvH4_2g06800 Fragaria vesca
Glyma.09G244800 Glycine max
Glyma.18G248400 Glycine max
Gohir.A12G002200 Gossypium hirsutum
Gohir.D12G001900 Gossypium hirsutum
Gorai.008G001300 Gossypium raimondii
GSVIVG01003913001 Vitis vinifera
HanXRQChr08g0212421 Helianthus annuus
HanXRQChr12g0363401 Helianthus annuus
Haze_06261 Corylus avellana
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla
HPP92_020809 Vanilla planifolia
Hund22667 Selenicereus undatus
Lalb_Chr01g0021691 Lupinus albus
Lalb_Chr03g0040611 Lupinus albus
Lj1g0014615 Lotus japonicus
Lj3C865T7 Lonicera japonica
Lj6A740G51 Lonicera japonica
Lsat_1_v5_gn_8_45601 Lactuca sativa
Manes.01G009000 Manihot esculenta
Mapoly0153s0038 Marchantia polymorpha
MBI15_g08971_MAGBIO Magnolia biondii
MCO13G568 Micromonas commoda
MD00G1055200 Malus domestica
MD07G1000400 Malus domestica
Medtr7g081230 Medicago truncatula
MELO3C008520.2 Cucumis melo
Migut.L00278 Erythranthe guttata
Migut.L00578 Erythranthe guttata
MSTRG.23493 Avicennia marina
Nitab4.5_0001568g0070 Nicotiana tabacum
Nitab4.5_0005132g0050 Nicotiana tabacum
Nn1g09391 Nelumbo nucifera
Oeu011024.1 Olea europaea
Oeu034368.2 Olea europaea
Oeu037862.1 Olea europaea
Oeu053147.1 Olea europaea
Os03g0391000 Oryza sativa ssp. japonica
Os04g0682000 Oryza sativa ssp. japonica
Peaxi162Scf00271g00518 Petunia axillaris
Peaxi162Scf00441g00621 Petunia axillaris
PGR142G2472 Punica granatum
PGSC0003DMG400032144 Solanum tuberosum
Phvul.008G048900 Phaseolus vulgaris
Potri.007G147100 Populus trichocarpa
Potri.017G000500 Populus trichocarpa
Pp3c11_22820 Physcomitrium patens
Pp3c7_280 Physcomitrium patens
PRCOL_00001711 Prasinoderma coloniale
Prupe.2G000200 Prunus persica
Psat0s3112g0040 Pisum sativum
PSO675G0050 Papaver somniferum
PSO732G0206 Papaver somniferum
QL05p046231 Quercus lobata
RcHm_v2.0_Chr6g0259021 Rosa chinensis
Rhsim09G0091900 Rhododendron simsii
Sabra17G0005400 Salix brachista
SalBow7G0073 Salvia bowleyana
Sc08g0007990 Simmondsia chinensis
Sed0011939 Sechium edule
Sed0016347 Sechium edule
SEGI_37986 Sequoiadendron giganteum
SGA_v2.0_scaffold37G14795 Striga asiatica
SGA_v2.0_scaffold3G01797 Striga asiatica
SHI01175 Sapria himalayana
SMO145G0104 Selaginella moellendorffii
Solyc01g006230.3 Solanum lycopersicum
Sopen01g002230 Solanum pennellii
Sp4g26220 Schrenkiella parvula
Sp5g03230 Schrenkiella parvula
TAR365G0341 Trochodendron aralioides
TAR633G1686 Trochodendron aralioides
THA.LOC104804900 Tarenaya hassleriana
THA.LOC104808419 Tarenaya hassleriana
Thecc.01G234100 Theobroma cacao
Thhalv10001432m.g Eutrema salsugineum
Thhalv10005940m.g Eutrema salsugineum
TPR.G29111 Trifolium pratense
TWI15G0551 Tripterygium wilfordii
TWI63G0479 Tripterygium wilfordii
unitig_32.g11897 Utricularia gibba
unitig_748.g8760 Utricularia gibba
vmacro09116 Vaccinium macrocarpon
vmacro10687 Vaccinium macrocarpon
VMungo1383G0353 Vigna mungo
Zm00001eb065800 Zea mays
Zm00001eb264230 Zea mays
Zm00001eb419970 Zea mays
Zm00001eb433950 Zea mays

User provided reference genes

Program Settings