Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p35130 Brassica napus
A06p38980 Brassica napus
Aa31LG5G17730 Aethionema arabicum
Aa31LG5G17750 Aethionema arabicum
Aa31sc370G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.277 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3201 Anthoceros agrestis
Actinidia09474 Actinidia chinensis
Actinidia23715 Actinidia chinensis
Actinidia31468 Actinidia chinensis
Ah.08g214500 Amaranthus hybridus
AL3G18420 Arabidopsis lyrata
AL8G21740 Arabidopsis lyrata
Aqoxy5G00012 Aquilegia oxysepala
Aqoxy6G01444 Aquilegia oxysepala
Aqoxy7G01138 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.P0KJIP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YG552F Arachis hypogaea
AT3G07170 Arabidopsis thaliana
AT5G48680 Arabidopsis thaliana
ATR0609G102 Amborella trichopoda
Atru.chr6.1416 Acer truncatum
AUR62001117 Chenopodium quinoa
AUR62016559 Chenopodium quinoa
AUR62035029 Chenopodium quinoa
BcaB04g19583 Brassica carinata
BcaC04g23765 Brassica carinata
BcaC05g29749 Brassica carinata
BcaC05g29846 Brassica carinata
BcaC06g30768 Brassica carinata
BolC3t16542H Brassica oleracea
BolC5t34670H Brassica oleracea
BolC7t44455H Brassica oleracea
BraA03t12693Z Brassica rapa
BraA05t22830Z Brassica rapa
BraA06t26812Z Brassica rapa
C03p42720 Brassica napus
C05p60200 Brassica napus
C07p39350 Brassica napus
CAN.G5.45 Capsicum annuum
CANSAT01G1788 Cannabis sativa
CANSAT01G1918 Cannabis sativa
CARHR081810 Cardamine hirsuta
CARHR183220 Cardamine hirsuta
Carub.0003s0669 Capsella rubella
Carub.0008s0842 Capsella rubella
Ca_23234_v3 Cicer arietinum L.
Cc01_g16830 Coffea canephora
CDE05G2788 Ceratophyllum demersum
CDE05G3121 Ceratophyllum demersum
Cfa002841 Carpinus fangiana
Ciclev10022271m.g Citrus clementina
CiPaw.03G146900 Carya illinoinensis
CiPaw.04G104300 Carya illinoinensis
ClCG09G008850 Citrullus lanatus
COL.COLO4_15645 Corchorus olitorius
Cpa.g.sc8.132 Carica papaya
CsaV3_7G026020 Cucumis sativus L.
CSS0000113 Camellia sinensis var. sinensis
CSS0009711 Camellia sinensis var. sinensis
CSS0026054 Camellia sinensis var. sinensis
CSS0042014 Camellia sinensis var. sinensis
DCAR_004727 Daucus carota
Dinv12666 Davidia involucrata
Dinv19185 Davidia involucrata
Duzib133G0063 Durio zibethinus
Duzib138G1906 Durio zibethinus
Duzib211G0008 Durio zibethinus
ECA247G2681 Erigeron canadensis
ECA248G3101 Erigeron canadensis
EL10Ac7g17872 Beta vulgaris
Eucgr.K02144 Eucalyptus grandis
FAN15G2255 Fragaria x ananassa
FAN24G3335 Fragaria x ananassa
FAN27G1941 Fragaria x ananassa
FvH4_2g18710 Fragaria vesca
Glyma.03G064800 Glycine max
Glyma.08G349900 Glycine max
Glyma.16G100600 Glycine max
Glyma.18G166400 Glycine max
Gohir.A07G200150 Gossypium hirsutum
Gohir.A07G200400 Gossypium hirsutum
Gohir.D07G206500 Gossypium hirsutum
Gohir.D07G206700 Gossypium hirsutum
Gorai.001G232800 Gossypium raimondii
Gorai.001G233000 Gossypium raimondii
GSVIVG01038356001 Vitis vinifera
HanXRQChr01g0015241 Helianthus annuus
Haze_24836 Corylus avellana
Haze_24839 Corylus avellana
HPP92_021424 Vanilla planifolia
Hund05569 Selenicereus undatus
Hund18422 Selenicereus undatus
Lalb_Chr07g0194271 Lupinus albus
Lalb_Chr12g0209941 Lupinus albus
Lj2C1127G11 Lonicera japonica
Lj3g0009581 Lotus japonicus
Lsat_1_v5_gn_5_180640 Lactuca sativa
Manes.12G046500 Manihot esculenta
Manes.13G047800 Manihot esculenta
Mapoly0007s0146 Marchantia polymorpha
MD05G1172900 Malus domestica
MD10G1161300 Malus domestica
Medtr8g012995 Medicago truncatula
MELO3C021054.2 Cucumis melo
Migut.D02496 Erythranthe guttata
Migut.N00625 Erythranthe guttata
MSTRG.18841 Avicennia marina
MSTRG.20964 Avicennia marina
Nitab4.5_0000045g0390 Nicotiana tabacum
Nitab4.5_0000345g0040 Nicotiana tabacum
Nitab4.5_0002616g0050 Nicotiana tabacum
Nitab4.5_0002641g0160 Nicotiana tabacum
Nn1g07928 Nelumbo nucifera
Nn3g20007 Nelumbo nucifera
Nn6g34892 Nelumbo nucifera
Oeu031826.2 Olea europaea
Oeu037381.1 Olea europaea
Oeu037383.1 Olea europaea
Os04g0378200 Oryza sativa ssp. japonica
Os08g0526500 Oryza sativa ssp. japonica
Peaxi162Scf00238g00213 Petunia axillaris
PGR044G0663 Punica granatum
PGSC0003DMG400017482 Solanum tuberosum
Phvul.008G130000 Phaseolus vulgaris
Phvul.010G020800 Phaseolus vulgaris
Potri.002G244700 Populus trichocarpa
Potri.014G190800 Populus trichocarpa
Pp3c16_11410 Physcomitrium patens
Prupe.8G200300 Prunus persica
Psat4g200440 Pisum sativum
PSO170G6902 Papaver somniferum
PSO357G0115 Papaver somniferum
QL09p052136 Quercus lobata
QL09p053006 Quercus lobata
RcHm_v2.0_Chr6g0284331 Rosa chinensis
Rhsim01G0254500 Rhododendron simsii
Rhsim13G0046900 Rhododendron simsii
Sabra02G0186200 Salix brachista
Sabra02G0186300 Salix brachista
Sabra14G0142300 Salix brachista
SalBow6G0123 Salvia bowleyana
Sc05g0002020 Simmondsia chinensis
Sc17g0002200 Simmondsia chinensis
Sed0012318 Sechium edule
Sed0014618 Sechium edule
SGA_v2.0_scaffold18G08327 Striga asiatica
SGA_v2.0_scaffold3G01636 Striga asiatica
SGA_v2.0_scaffold6G03227 Striga asiatica
SMO147G0262 Selaginella moellendorffii
Solyc09g059620.4 Solanum lycopersicum
Sopen09g022790 Solanum pennellii
Sp2g19090 Schrenkiella parvula
Sp3g06110 Schrenkiella parvula
TAR362G1128 Trochodendron aralioides
TAR369G0358 Trochodendron aralioides
TAR636G3655 Trochodendron aralioides
THA.LOC104802662 Tarenaya hassleriana
THA.LOC104818966 Tarenaya hassleriana
THA.LOC104822497 Tarenaya hassleriana
Thecc.01G222100 Theobroma cacao
Thhalv10004989m.g Eutrema salsugineum
Thhalv10021536m.g Eutrema salsugineum
TPR.G17124 Trifolium pratense
TWI18G1339 Tripterygium wilfordii
TWI36G1515 Tripterygium wilfordii
TWI75G0190 Tripterygium wilfordii
unitig_736.g22341 Utricularia gibba
unitig_899.g15018 Utricularia gibba
vmacro02774 Vaccinium macrocarpon
vmacro14743 Vaccinium macrocarpon
VMungo0331G0837 Vigna mungo
VMungo1383G0676 Vigna mungo
Zm00001eb032510 Zea mays
Zm00001eb036250 Zea mays
Zm00001eb085860 Zea mays
Zm00001eb128390 Zea mays
Zm00001eb420700 Zea mays

User provided reference genes

Program Settings