Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p34890 Brassica napus
A03p51550 Brassica napus
A05p29250 Brassica napus
A05p29270 Brassica napus
Aa31LG11G15090 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3627 Anthoceros agrestis
Actinidia06312 Actinidia chinensis
Actinidia36169 Actinidia chinensis
Actinidia36170 Actinidia chinensis
AL2G37760 Arabidopsis lyrata
AL8G25150 Arabidopsis lyrata
Aqoxy2G02417 Aquilegia oxysepala
Aqoxy6G00237 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2L480B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.61M3XX Arachis hypogaea
AT5G50960 Arabidopsis thaliana
ATR0782G139 Amborella trichopoda
Atru.chr6.2490 Acer truncatum
AUR62002701 Chenopodium quinoa
AUR62014165 Chenopodium quinoa
AUR62014166 Chenopodium quinoa
BcaC05g24912 Brassica carinata
BcaC05g28398 Brassica carinata
BcaC05g28399 Brassica carinata
BcaC06g30598 Brassica carinata
BcaC09g48941 Brassica carinata
BcaNung02678 Brassica carinata
BolC1t04394H Brassica oleracea
BolC3t17359H Brassica oleracea
BolC5t33204H Brassica oleracea
BolC7t45504H Brassica oleracea
BraA01t03571Z Brassica rapa
BraA03t14240Z Brassica rapa
BraA05t21810Z Brassica rapa
C01p44280 Brassica napus
C03p50710 Brassica napus
C05p44780 Brassica napus
C07p50020 Brassica napus
CAN.G566.35 Capsicum annuum
CANSAT64G0400 Cannabis sativa
CARHR257230 Cardamine hirsuta
CARHR257250 Cardamine hirsuta
Carub.0008s1098 Capsella rubella
Ca_13161_v3 Cicer arietinum L.
CBR_g50436 Chara braunii
Cc00_g01950 Coffea canephora
Cc00_g03690 Coffea canephora
CDE02G2967 Ceratophyllum demersum
CDE09G0216 Ceratophyllum demersum
Cfa007272 Carpinus fangiana
Cfa021752 Carpinus fangiana
Cfa023831 Carpinus fangiana
Ciclev10015755m.g Citrus clementina
CiPaw.03G050800 Carya illinoinensis
CiPaw.04G033400 Carya illinoinensis
ClCG04G001410 Citrullus lanatus
COL.COLO4_15326 Corchorus olitorius
COL.COLO4_15327 Corchorus olitorius
Cpa.g.sc130.36 Carica papaya
Cpa.g.sc130.37 Carica papaya
Cre12.g494400 Chlamydomonas reinhardtii
CsaV3_4G031060 Cucumis sativus L.
DCAR_005600 Daucus carota
DCAR_011293 Daucus carota
DCAR_015078 Daucus carota
Dinv41146 Davidia involucrata
Duzib106G0341 Durio zibethinus
Duzib177G1128 Durio zibethinus
Duzib264G0449 Durio zibethinus
ECA232G3599 Erigeron canadensis
EL10Ac7g16174 Beta vulgaris
Eucgr.D01084 Eucalyptus grandis
FAN02G2946 Fragaria x ananassa
FAN05G0109 Fragaria x ananassa
FAN09G0633 Fragaria x ananassa
FAN14G5526 Fragaria x ananassa
FvH4_6g52730 Fragaria vesca
Glyma.10G142400 Glycine max
Glyma.14G095000 Glycine max
Glyma.17G228500 Glycine max
Gohir.A09G033520 Gossypium hirsutum
Gohir.D09G033800 Gossypium hirsutum
Gorai.006G038800 Gossypium raimondii
GSVIVG01001845001 Vitis vinifera
HanXRQChr05g0147751 Helianthus annuus
HanXRQChr05g0147771 Helianthus annuus
HanXRQChr11g0321651 Helianthus annuus
HanXRQChr15g0470031 Helianthus annuus
Haze_14818 Corylus avellana
Haze_27350 Corylus avellana
Haze_27426 Corylus avellana
Hma1.2p1_0227F.1_g095890 Hydrangea macrophylla
Hma1.2p1_0227F.1_g095900 Hydrangea macrophylla
Hma1.2p1_1484F.1_g286340 Hydrangea macrophylla
HPP92_019923 Vanilla planifolia
Hund20055 Selenicereus undatus
Hund27387 Selenicereus undatus
Lalb_Chr05g0220891 Lupinus albus
Lalb_Chr16g0386401 Lupinus albus
Lj1g0002107 Lotus japonicus
Lj1g0003723 Lotus japonicus
Lj1g0006363 Lotus japonicus
Lj1g0011810 Lotus japonicus
Lj1g0018394 Lotus japonicus
LjContig00155g0003661 Lotus japonicus
Lju41A47T19 Lonicera japonica
Lju41A47T20 Lonicera japonica
Lsat_1_v5_gn_0_8180 Lactuca sativa
Manes.15G156600 Manihot esculenta
Mapoly0071s0001 Marchantia polymorpha
MBI17_g07068_MAGBIO Magnolia biondii
MCO01G078 Micromonas commoda
MD09G1017000 Malus domestica
MD17G1017500 Malus domestica
Medtr1g016110 Medicago truncatula
Medtr1g019620 Medicago truncatula
MELO3C008983.2 Cucumis melo
Migut.H00063 Erythranthe guttata
MSTRG.24071 Avicennia marina
MSTRG.3108 Avicennia marina
Nitab4.5_0000136g0010 Nicotiana tabacum
Nitab4.5_0000668g0140 Nicotiana tabacum
Nitab4.5_0001961g0110 Nicotiana tabacum
Nitab4.5_0005160g0070 Nicotiana tabacum
Nn3g16559 Nelumbo nucifera
Oeu033367.1 Olea europaea
Oeu058762.1 Olea europaea
Os02g0601100 Oryza sativa ssp. japonica
Os04g0485400 Oryza sativa ssp. japonica
Peaxi162Scf00046g02622 Petunia axillaris
Peaxi162Scf00169g00820 Petunia axillaris
PGR142G3649 Punica granatum
PGSC0003DMG401029267 Solanum tuberosum
PGSC0003DMG402029267 Solanum tuberosum
Phvul.001G035900 Phaseolus vulgaris
Potri.001G336900 Populus trichocarpa
Pp3c11_10240 Physcomitrium patens
PRCOL_00004632 Prasinoderma coloniale
Prupe.1G532900 Prunus persica
Prupe.3G300400 Prunus persica
Psat6g020160 Pisum sativum
PSO017G7334 Papaver somniferum
PSO541G0693 Papaver somniferum
PSO675G6248 Papaver somniferum
QL02p072792 Quercus lobata
QL04p003729 Quercus lobata
QL06p031218 Quercus lobata
QL09p018923 Quercus lobata
RcHm_v2.0_Chr2g0174341 Rosa chinensis
Rhsim10G0010900 Rhododendron simsii
Sabra16G0217800 Salix brachista
SalBow8G1058 Salvia bowleyana
Sc14g0001460 Simmondsia chinensis
Sed0009517 Sechium edule
Sed0012212 Sechium edule
SEGI_31184 Sequoiadendron giganteum
SHI03873 Sapria himalayana
SMO301G0043 Selaginella moellendorffii
Solyc12g096690.2 Solanum lycopersicum
Sopen12g032520 Solanum pennellii
Sp3g17870 Schrenkiella parvula
Sp7g17580 Schrenkiella parvula
TAR371G0752 Trochodendron aralioides
TAR629G1857 Trochodendron aralioides
THA.LOC104802387 Tarenaya hassleriana
THA.LOC104820947 Tarenaya hassleriana
Thecc.04G028000 Theobroma cacao
Thecc.05G285600 Theobroma cacao
Thhalv10021039m.g Eutrema salsugineum
Thhalv10024147m.g Eutrema salsugineum
TPR.G13098 Trifolium pratense
TPR.G39975 Trifolium pratense
TWI18G0330 Tripterygium wilfordii
TWI36G1591 Tripterygium wilfordii
unitig_899.g15454 Utricularia gibba
unitig_899.g15455 Utricularia gibba
VMungo0647G1296 Vigna mungo
Zm00001eb183970 Zea mays
Zm00001eb246360 Zea mays

User provided reference genes

Program Settings