Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p01380 Brassica napus
Aa31LG10G2130 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.381 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.5148 Anthoceros agrestis
Actinidia35256 Actinidia chinensis
Ah.02g127520 Amaranthus hybridus
Ah.02g127530 Amaranthus hybridus
Ah.03g144680 Amaranthus hybridus
AL1G61320 Arabidopsis lyrata
Aqoxy3G02137 Aquilegia oxysepala
Aqoxy4G01004 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7MJ4MY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D4F45X Arachis hypogaea
AT1G52980 Arabidopsis thaliana
ATR0680G057 Amborella trichopoda
Atru.chr2.2716 Acer truncatum
AUR62034278 Chenopodium quinoa
BcaB02g10967 Brassica carinata
BcaB07g33370 Brassica carinata
BcaC08g43481 Brassica carinata
BcaC08g44019 Brassica carinata
BolC6t36608H Brassica oleracea
BraA06t23360Z Brassica rapa
C06p08670 Brassica napus
C06p14330 Brassica napus
CAN.G162.71 Capsicum annuum
CANSAT56G3533 Cannabis sativa
CARHR032500 Cardamine hirsuta
CARHR043180 Cardamine hirsuta
CARHR152440 Cardamine hirsuta
CARHR224670 Cardamine hirsuta
Carub.0001s4212 Capsella rubella
Ca_01830_v3 Cicer arietinum L.
Ca_01831_v3 Cicer arietinum L.
CBR_g28541 Chara braunii
Cc05_g12240 Coffea canephora
CDE08G0584 Ceratophyllum demersum
Cfa019305 Carpinus fangiana
Cfa020553 Carpinus fangiana
Cfa026970 Carpinus fangiana
Ciclev10007878m.g Citrus clementina
Ciclev10009987m.g Citrus clementina
CiPaw.08G146100 Carya illinoinensis
CiPaw.12G120400 Carya illinoinensis
ClCG09G018660 Citrullus lanatus
COL.COLO4_09425 Corchorus olitorius
Cpa.g.sc80.41 Carica papaya
Cre07.g340050 Chlamydomonas reinhardtii
CsaV3_5G037440 Cucumis sativus L.
CSS0003611 Camellia sinensis var. sinensis
DCAR_013090 Daucus carota
Dinv08310 Davidia involucrata
Dinv18297 Davidia involucrata
Duzib213G0026 Durio zibethinus
ECA240G0083 Erigeron canadensis
EL10Ac4g08140 Beta vulgaris
Eucgr.F03333 Eucalyptus grandis
FAN02G3228 Fragaria x ananassa
FAN04G1578 Fragaria x ananassa
FAN05G0276 Fragaria x ananassa
FAN08G1280 Fragaria x ananassa
FAN13G0946 Fragaria x ananassa
FAN14G4652 Fragaria x ananassa
FAN18G3753 Fragaria x ananassa
FvH4_5g29580 Fragaria vesca
FvH4_6g33850 Fragaria vesca
Glyma.12G223000 Glycine max
Glyma.13G278500 Glycine max
Gohir.A04G028700 Gossypium hirsutum
Gohir.D05G358600 Gossypium hirsutum
Gorai.009G434700 Gossypium raimondii
GSVIVG01013074001 Vitis vinifera
GSVIVG01014369001 Vitis vinifera
HanXRQChr13g0407421 Helianthus annuus
Haze_09463 Corylus avellana
Haze_27102 Corylus avellana
Hma1.2p1_0148F.1_g066150 Hydrangea macrophylla
HPP92_018299 Vanilla planifolia
HPP92_027892 Vanilla planifolia
Hund22938 Selenicereus undatus
Lalb_Chr01g0016961 Lupinus albus
Lalb_Chr25g0286521 Lupinus albus
Lalb_Chr25g0286531 Lupinus albus
Lj3g0017419 Lotus japonicus
Lj4g0007507 Lotus japonicus
Lj4g0015469 Lotus japonicus
Lj4g0017191 Lotus japonicus
Lj5g0011990 Lotus japonicus
Lj8A157T55 Lonicera japonica
Lsat_1_v5_gn_9_97121 Lactuca sativa
Manes.01G147800 Manihot esculenta
Manes.03G112600 Manihot esculenta
Manes.03G112800 Manihot esculenta
Manes.04G058628 Manihot esculenta
Mapoly0122s0018 Marchantia polymorpha
MBI17_g43196_MAGBIO Magnolia biondii
MCO07G526 Micromonas commoda
MD00G1089700 Malus domestica
MD03G1224500 Malus domestica
MD10G1052400 Malus domestica
Medtr2g079510 Medicago truncatula
Medtr2g079540 Medicago truncatula
Medtr4g081850 Medicago truncatula
Medtr5g010400 Medicago truncatula
MELO3C032716.2 Cucumis melo
MELO3C033351.2 Cucumis melo
MELO3C033647.2 Cucumis melo
Migut.M00853 Erythranthe guttata
MSTRG.15219 Avicennia marina
Nitab4.5_0003769g0030 Nicotiana tabacum
Nitab4.5_0003769g0100 Nicotiana tabacum
Nitab4.5_0010521g0010 Nicotiana tabacum
Nitab4.5_0011553g0010 Nicotiana tabacum
Nn1g06588 Nelumbo nucifera
Oeu005421.1 Olea europaea
Oeu060544.1 Olea europaea
Os03g0352400 Oryza sativa ssp. japonica
Peaxi162Scf00052g02012 Petunia axillaris
Peaxi162Scf00069g01212 Petunia axillaris
PGR031G0721 Punica granatum
PGR031G3608 Punica granatum
PGSC0003DMG400012452 Solanum tuberosum
PGSC0003DMG400012453 Solanum tuberosum
PGSC0003DMG400015436 Solanum tuberosum
PGSC0003DMG400016932 Solanum tuberosum
PGSC0003DMG400028011 Solanum tuberosum
Phvul.005G082600 Phaseolus vulgaris
Phvul.005G082701 Phaseolus vulgaris
Phvul.007G273700 Phaseolus vulgaris
Phvul.011G172500 Phaseolus vulgaris
Phvul.011G177700 Phaseolus vulgaris
Potri.001G402500 Populus trichocarpa
Pp3c1_3230 Physcomitrium patens
PRCOL_00004437 Prasinoderma coloniale
Prupe.4G184700 Prunus persica
Psat6g240320 Pisum sativum
PSO210G3517 Papaver somniferum
PSO210G5630 Papaver somniferum
PSO528G0156 Papaver somniferum
PSO782G4342 Papaver somniferum
PSO832G0205 Papaver somniferum
PSO832G2656 Papaver somniferum
QL08p020021 Quercus lobata
RcHm_v2.0_Chr4g0433481 Rosa chinensis
RcHm_v2.0_Chr4g0433491 Rosa chinensis
RcHm_v2.0_Chr7g0222551 Rosa chinensis
Rhsim04G0019800 Rhododendron simsii
Sabra16G0264000 Salix brachista
SalBow7G0398 Salvia bowleyana
SalBow7G4534 Salvia bowleyana
Sc07g0002600 Simmondsia chinensis
Sed0017316 Sechium edule
Sed0025069 Sechium edule
SEGI_28100 Sequoiadendron giganteum
SGA_v2.0_scaffold34G13732 Striga asiatica
SGA_v2.0_scaffold73G24291 Striga asiatica
SHI05032 Sapria himalayana
SMO367G1211 Selaginella moellendorffii
Solyc07g063270.3 Solanum lycopersicum
Solyc07g063280.3 Solanum lycopersicum
Sopen07g031450 Solanum pennellii
Sp1g39540 Schrenkiella parvula
TAR624G1142 Trochodendron aralioides
TAR626G1410 Trochodendron aralioides
THA.LOC104810482 Tarenaya hassleriana
THA.LOC104818066 Tarenaya hassleriana
Thecc.06G008900 Theobroma cacao
Thhalv10011345m.g Eutrema salsugineum
TPR.G26574 Trifolium pratense
TPR.G28203 Trifolium pratense
TPR.G31093 Trifolium pratense
TPR.G38959 Trifolium pratense
TPR.G39016 Trifolium pratense
TWI53G0481 Tripterygium wilfordii
TWI73G0301 Tripterygium wilfordii
unitig_46.g18324 Utricularia gibba
vmacro09541 Vaccinium macrocarpon
VMungo0540G0346 Vigna mungo
VMungo0540G2174 Vigna mungo
VMungo1080G0416 Vigna mungo
Zm00001eb016990 Zea mays

User provided reference genes

Program Settings