Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p34610 Brassica napus
A09p06830 Brassica napus
Aa31LG11G3050 Aethionema arabicum
Aa31sc38G110 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis
Actinidia15994 Actinidia chinensis
Ah.03g133930 Amaranthus hybridus
AL6G34980 Arabidopsis lyrata
Aqoxy6G01949 Aquilegia oxysepala
Aqoxy6G01956 Aquilegia oxysepala
Aqoxy6G02090 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BPPD68 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea
AT5G23710 Arabidopsis thaliana
ATR0580G255 Amborella trichopoda
Atru.chr1.3022 Acer truncatum
Atru.chr1.3024 Acer truncatum
Atru.chr1.3033 Acer truncatum
Atru.chr1.3040 Acer truncatum
AUR62011796 Chenopodium quinoa
AUR62024643 Chenopodium quinoa
BcaB04g19852 Brassica carinata
BcaB04g19853 Brassica carinata
BcaC04g23509 Brassica carinata
BcaNung01845 Brassica carinata
BolC7t44916H Brassica oleracea
BolC9t53671H Brassica oleracea
BraA06t26389Z Brassica rapa
BraA09t36329Z Brassica rapa
C07p43880 Brassica napus
C09p07550 Brassica napus
CAN.G1683.1 Capsicum annuum
CAN.G2872.1 Capsicum annuum
CAN.G812.32 Capsicum annuum
CANSAT35G0296 Cannabis sativa
CARHR189840 Cardamine hirsuta
Carub.0006s2146 Capsella rubella
Ca_06841_v3 Cicer arietinum L.
CBR_g39324 Chara braunii
Cc08_g05300 Coffea canephora
Cfa001979 Carpinus fangiana
Ciclev10009494m.g Citrus clementina
Ciclev10026399m.g Citrus clementina
CiPaw.09G152500 Carya illinoinensis
ClCG00G001180 Citrullus lanatus
ClCG02G018290 Citrullus lanatus
ClCG10G003800 Citrullus lanatus
COL.COLO4_12944 Corchorus olitorius
Cpa.g.sc37.21 Carica papaya
Cre07.g314950 Chlamydomonas reinhardtii
CsaV3_3G003760 Cucumis sativus L.
CSS0030442 Camellia sinensis var. sinensis
CSS0038493 Camellia sinensis var. sinensis
DCAR_002196 Daucus carota
DCAR_030901 Daucus carota
Dinv08128 Davidia involucrata
Duzib160G0900 Durio zibethinus
ECA240G1229 Erigeron canadensis
Eucgr.F01771 Eucalyptus grandis
Eucgr.J01004 Eucalyptus grandis
FAN02G0052 Fragaria x ananassa
FAN02G2701 Fragaria x ananassa
FAN05G0849 Fragaria x ananassa
FAN05G3809 Fragaria x ananassa
FAN09G0714 Fragaria x ananassa
FAN09G1243 Fragaria x ananassa
FAN14G0588 Fragaria x ananassa
FAN14G5252 Fragaria x ananassa
FAN14G5801 Fragaria x ananassa
FvH4_6g29950 Fragaria vesca
FvH4_6g41460 Fragaria vesca
Glyma.07G041800 Glycine max
Glyma.09G089900 Glycine max
Glyma.18G279200 Glycine max
Gohir.A02G058000 Gossypium hirsutum
Gohir.D02G063800 Gossypium hirsutum
Gorai.005G071700 Gossypium raimondii
GSVIVG01004444001 Vitis vinifera
GSVIVG01017309001 Vitis vinifera
HanXRQChr03g0081131 Helianthus annuus
HanXRQChr03g0081311 Helianthus annuus
HanXRQChr17g0537091 Helianthus annuus
Haze_16536 Corylus avellana
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla
HPP92_015034 Vanilla planifolia
HPP92_015113 Vanilla planifolia
Hund13161 Selenicereus undatus
Lalb_Chr17g0343451 Lupinus albus
Lj1g0002607 Lotus japonicus
Lj8P331T26 Lonicera japonica
Lsat_1_v5_gn_3_23440 Lactuca sativa
Lsat_1_v5_gn_3_23460 Lactuca sativa
Manes.04G114300 Manihot esculenta
Mapoly0090s0008 Marchantia polymorpha
MBI14_g44482_MAGBIO Magnolia biondii
MCO15G473 Micromonas commoda
MD08G1239800 Malus domestica
MD15G1431400 Malus domestica
Medtr0003s0690 Medicago truncatula
Medtr7g109760 Medicago truncatula
Medtr7g109780 Medicago truncatula
MELO3C007348.2 Cucumis melo
MELO3C014058.2 Cucumis melo
Migut.J01128 Erythranthe guttata
MSTRG.11877 Avicennia marina
Nitab4.5_0000255g0050 Nicotiana tabacum
Nitab4.5_0000898g0100 Nicotiana tabacum
Nitab4.5_0004267g0010 Nicotiana tabacum
Nitab4.5_0009310g0060 Nicotiana tabacum
Nn1g05222 Nelumbo nucifera
Oeu039594.1 Olea europaea
Oeu056610.1 Olea europaea
Oeu056611.1 Olea europaea
Os06g0603400 Oryza sativa ssp. japonica
Peaxi162Scf00053g00522 Petunia axillaris
Peaxi162Scf00573g00044 Petunia axillaris
PGR044G0538 Punica granatum
PGSC0003DMG400003846 Solanum tuberosum
PGSC0003DMG402007612 Solanum tuberosum
Phvul.008G021700 Phaseolus vulgaris
Phvul.010G127200 Phaseolus vulgaris
Potri.001G003700 Populus trichocarpa
Potri.003G033600 Populus trichocarpa
Potri.003G221301 Populus trichocarpa
Potri.018G000800 Populus trichocarpa
Pp3c22_6800 Physcomitrium patens
PRCOL_00004812 Prasinoderma coloniale
Prupe.1G576300 Prunus persica
Prupe.5G067300 Prunus persica
Psat4g001640 Pisum sativum
PSO170G1737 Papaver somniferum
PSO384G2135 Papaver somniferum
PSO384G3622 Papaver somniferum
PSO455G0078 Papaver somniferum
PSO455G0143 Papaver somniferum
QL01p011549 Quercus lobata
QL03p059502 Quercus lobata
QL05p029016 Quercus lobata
QL06p036898 Quercus lobata
RcHm_v2.0_Chr2g0135951 Rosa chinensis
RcHm_v2.0_Chr6g0271261 Rosa chinensis
RcHm_v2.0_Chr6g0271271 Rosa chinensis
Rhsim05G0080000 Rhododendron simsii
Rhsim11G0183700 Rhododendron simsii
Rhsim12G0192200 Rhododendron simsii
Sabra01G0002500 Salix brachista
SalBow2G2359 Salvia bowleyana
Sc24g0003260 Simmondsia chinensis
Sed0000714 Sechium edule
Sed0021000 Sechium edule
SEGI_04069 Sequoiadendron giganteum
SEGI_04929 Sequoiadendron giganteum
SGA_v2.0_scaffold120G32921 Striga asiatica
SGA_v2.0_scaffold146G36137 Striga asiatica
Solyc08g075580.3 Solanum lycopersicum
Sopen08g024260 Solanum pennellii
Sp2g23520 Schrenkiella parvula
TAR625G0731 Trochodendron aralioides
TAR636G2069 Trochodendron aralioides
TAR636G2311 Trochodendron aralioides
THA.LOC104798921 Tarenaya hassleriana
Thecc.03G134500 Theobroma cacao
Thecc.06G021200 Theobroma cacao
Thhalv10005351m.g Eutrema salsugineum
TPR.G19896 Trifolium pratense
TPR.G20064 Trifolium pratense
TWI36G0443 Tripterygium wilfordii
TWI56G0980 Tripterygium wilfordii
unitig_0.g2831 Utricularia gibba
vmacro11452 Vaccinium macrocarpon
vmacro16904 Vaccinium macrocarpon
vmacro18986 Vaccinium macrocarpon
VMungo0331G0552 Vigna mungo
VMungo0720G1683 Vigna mungo
VMungo1383G0008 Vigna mungo
VMungo1383G0391 Vigna mungo
Zm00001eb276730 Zea mays
Zm00001eb356740 Zea mays
Zm00001eb386260 Zea mays

User provided reference genes

Program Settings