Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p17240 Brassica napus
A08p00210 Brassica napus
Aa31LG10G12280 Aethionema arabicum
Aa31LG10G280 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3649 Anthoceros agrestis
Actinidia26782 Actinidia chinensis
Actinidia35392 Actinidia chinensis
Ah.09g232360 Amaranthus hybridus
AL1G64040 Arabidopsis lyrata
Aqoxy4G02253 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0CP2Z1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7DV3CN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KD8HWC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V5ECKZ Arachis hypogaea
AT1G55900 Arabidopsis thaliana
ATR0051G023 Amborella trichopoda
ATR0661G012 Amborella trichopoda
Atru.chr2.3670 Acer truncatum
AUR62002662 Chenopodium quinoa
AUR62015014 Chenopodium quinoa
AUR62029099 Chenopodium quinoa
AUR62042758 Chenopodium quinoa
BcaB02g10791 Brassica carinata
BcaB07g33181 Brassica carinata
BcaC08g43663 Brassica carinata
BcaC08g44227 Brassica carinata
BolC3t21627H Brassica oleracea
BolC6t36829H Brassica oleracea
BraA05t20623Z Brassica rapa
BraA08t32078Z Brassica rapa
BraSC56t46396Z Brassica rapa
C03p93290 Brassica napus
C06p10810 Brassica napus
C06p16290 Brassica napus
CAN.G337.16 Capsicum annuum
CAN.G492.34 Capsicum annuum
CANSAT11G1118 Cannabis sativa
CARHR045610 Cardamine hirsuta
Carub.0001s4449 Capsella rubella
Ca_06387_v3 Cicer arietinum L.
Ca_29968_v3 Cicer arietinum L.
CBR_g55789 Chara braunii
Cc05_g14840 Coffea canephora
CDE04G0478 Ceratophyllum demersum
CDE06G2162 Ceratophyllum demersum
Cfa020209 Carpinus fangiana
Cfa024030 Carpinus fangiana
Ciclev10010336m.g Citrus clementina
CiPaw.11G202500 Carya illinoinensis
CiPaw.12G137000 Carya illinoinensis
ClCG09G021200 Citrullus lanatus
Cpa.g.sc12.165 Carica papaya
Cpa.g.sc12.167 Carica papaya
Cpa.g.sc12.168 Carica papaya
Cpa.g.sc12.169 Carica papaya
Cre12.g505950 Chlamydomonas reinhardtii
CsaV3_7G018290 Cucumis sativus L.
CsaV3_7G018300 Cucumis sativus L.
CSS0016043 Camellia sinensis var. sinensis
CSS0023549 Camellia sinensis var. sinensis
CSS0029193 Camellia sinensis var. sinensis
CSS0037683 Camellia sinensis var. sinensis
DCAR_002611 Daucus carota
DCAR_030352 Daucus carota
Dinv10323 Davidia involucrata
Dinv40846 Davidia involucrata
Duzib170G0246 Durio zibethinus
Duzib213G0424 Durio zibethinus
ECA246G3526 Erigeron canadensis
EL10Ac3g06160 Beta vulgaris
EL10Ac9g22687 Beta vulgaris
Eucgr.F02057 Eucalyptus grandis
FAN11G0050 Fragaria x ananassa
FAN16G1094 Fragaria x ananassa
FAN21G2080 Fragaria x ananassa
FAN25G3705 Fragaria x ananassa
FvH4_3g29430 Fragaria vesca
Glyma.02G299400 Glycine max
Glyma.08G328500 Glycine max
Glyma.14G014300 Glycine max
Gohir.A01G090500 Gossypium hirsutum
Gohir.A04G006600 Gossypium hirsutum
Gohir.A04G006660 Gossypium hirsutum
Gohir.A08G024800 Gossypium hirsutum
Gohir.D01G075800 Gossypium hirsutum
Gohir.D05G381766 Gossypium hirsutum
Gohir.D05G381960 Gossypium hirsutum
Gohir.D05G382400 Gossypium hirsutum
Gohir.D05G382700 Gossypium hirsutum
Gohir.D08G035300 Gossypium hirsutum
Gorai.002G099000 Gossypium raimondii
Gorai.004G033300 Gossypium raimondii
Gorai.009G448800 Gossypium raimondii
Gorai.009G449000 Gossypium raimondii
Gorai.009G449200 Gossypium raimondii
GSVIVG01014657001 Vitis vinifera
GSVIVG01030074001 Vitis vinifera
HanXRQChr15g0477881 Helianthus annuus
HanXRQChr17g0544151 Helianthus annuus
Haze_09807 Corylus avellana
Hma1.2p1_0036F.1_g022520 Hydrangea macrophylla
Hma1.2p1_0889F.1_g232830 Hydrangea macrophylla
HPP92_012211 Vanilla planifolia
HPP92_012239 Vanilla planifolia
Hund01565 Selenicereus undatus
Hund17717 Selenicereus undatus
Lalb_Chr17g0348911 Lupinus albus
Lj3A846G58 Lonicera japonica
Lj6C707T17 Lonicera japonica
LjContig00081g0004982 Lotus japonicus
Lsat_1_v5_gn_0_11400 Lactuca sativa
Lsat_1_v5_gn_3_47521 Lactuca sativa
Lsat_1_v5_gn_7_29221 Lactuca sativa
Manes.03G140200 Manihot esculenta
Manes.03G140201 Manihot esculenta
Mapoly0016s0061 Marchantia polymorpha
MCO15G482 Micromonas commoda
MD03G1185000 Malus domestica
MD11G1201300 Malus domestica
Medtr5g095530 Medicago truncatula
MELO3C024922.2 Cucumis melo
Migut.M01662 Erythranthe guttata
MSTRG.15789 Avicennia marina
MSTRG.6991 Avicennia marina
Nitab4.5_0000461g0200 Nicotiana tabacum
Nitab4.5_0003491g0030 Nicotiana tabacum
Nitab4.5_0003876g0040 Nicotiana tabacum
Nitab4.5_0006756g0050 Nicotiana tabacum
Nn1g07909 Nelumbo nucifera
Nn3g20020 Nelumbo nucifera
Oeu014350.1 Olea europaea
Oeu041433.1 Olea europaea
Oeu057092.3 Olea europaea
Os01g0762400 Oryza sativa ssp. japonica
Os05g0513200 Oryza sativa ssp. japonica
Peaxi162Scf00612g00020 Petunia axillaris
Peaxi162Scf00836g00005 Petunia axillaris
PGR083G0192 Punica granatum
PGSC0003DMG400022178 Solanum tuberosum
Phvul.008G278100 Phaseolus vulgaris
Potri.001G364500 Populus trichocarpa
Potri.011G093000 Populus trichocarpa
Pp3c20_10110 Physcomitrium patens
Pp3c8_21800 Physcomitrium patens
PRCOL_00005785 Prasinoderma coloniale
Prupe.4G241500 Prunus persica
Psat2g008080 Pisum sativum
PSO210G4970 Papaver somniferum
PSO302G0247 Papaver somniferum
PSO541G3361 Papaver somniferum
PSO675G3765 Papaver somniferum
QL08p004743 Quercus lobata
RcHm_v2.0_Chr5g0053871 Rosa chinensis
Rhsim04G0013400 Rhododendron simsii
Sabra16G0239700 Salix brachista
SalBow8G2437 Salvia bowleyana
Sc06g0006950 Simmondsia chinensis
Sc17g0004670 Simmondsia chinensis
Sed0002134 Sechium edule
Sed0003792 Sechium edule
SEGI_38243 Sequoiadendron giganteum
SEGI_40461 Sequoiadendron giganteum
SGA_v2.0_scaffold168G38540 Striga asiatica
SGA_v2.0_scaffold171G38881 Striga asiatica
SHI26532 Sapria himalayana
SMO166G0042 Selaginella moellendorffii
SMO301G0003 Selaginella moellendorffii
SMO347G0232 Selaginella moellendorffii
Solyc07g065400.3 Solanum lycopersicum
Solyc10g006020.3 Solanum lycopersicum
Sopen07g033590 Solanum pennellii
Sopen07g033600 Solanum pennellii
Sopen10g001980 Solanum pennellii
Sp1g41500 Schrenkiella parvula
TAR629G0630 Trochodendron aralioides
TAR629G1666 Trochodendron aralioides
TAR629G1690 Trochodendron aralioides
THA.LOC104810288 Tarenaya hassleriana
THA.LOC104815699 Tarenaya hassleriana
THA.LOC104822737 Tarenaya hassleriana
Thecc.07G016000 Theobroma cacao
Thhalv10011579m.g Eutrema salsugineum
TPR.G35475 Trifolium pratense
TPR.G8583 Trifolium pratense
TWI38G1202 Tripterygium wilfordii
TWI39G0456 Tripterygium wilfordii
vmacro00102 Vaccinium macrocarpon
vmacro09654 Vaccinium macrocarpon
vmacro12089 Vaccinium macrocarpon
VMungo0647G0006 Vigna mungo
Zm00001eb303860 Zea mays
Zm00001eb353050 Zea mays
Zm00001eb370440 Zea mays
Zm00001eb423500 Zea mays

User provided reference genes

Program Settings