Gene: AT1G55900

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G55900
  • Transcript Identifier AT1G55900.1
  • Gene Type Coding gene
  • Location Chr1 : 20903163-20905420 : positive

Gene Family Information

  • ID HOM05D003514
  • #Genes/#Species 194/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G55900.1
  • symbol TIM50
  • uniprot Q8VYE2

Descriptions

  • Description Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
  • Computational description TIM50; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G29780.1); Has 2137 Blast hits to 2133 proteins in 243 species: Archae - 0; Bacteria - 8; Metazoa - 726; Fungi - 412; Plants - 369; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy
GO:0030150
IBA
Gene Ontologyprotein import into mitochondrial matrix1
GO:0015031
IEA
GOA Databaseprotein transport

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IDA
IEA
GOA Databasemitochondrion
GO:0005739
HDA
ISM
Gene Ontologymitochondrion2
GO:0005743
IEA
GOA Databasemitochondrial inner membrane
GO:0005743
HDA
Gene Ontologymitochondrial inner membrane3
GO:0005634
HDA
Gene Ontologynucleus4
GO:0005744
IBA
Gene OntologyTIM23 mitochondrial import inner membrane translocase complex1
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023214 HAD superfamily
IPR004274 FCP1 homology domain
IPR036412 HAD-like superfamily
Mapman id Description
18.4.26.1.4 Protein modification.phosphorylation.protein aspartate phosphatase superfamily.FCP phosphatase families.subcluster G phosphatase
23.2.3.7 Protein translocation.mitochondrion.inner mitochondrion membrane TIM translocation system.phosphatase component Tim50