Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p37690 Brassica napus
A06p38960 Brassica napus
A07p06030 Brassica napus
A09p04600 Brassica napus
Aa31LG10G10800 Aethionema arabicum
Aa31sc37G20 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2914 Anthoceros agrestis
Actinidia09476 Actinidia chinensis
Actinidia23718 Actinidia chinensis
Actinidia30068 Actinidia chinensis
AL8G21800 Arabidopsis lyrata
Aqoxy5G00010 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.FUXK5I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M88YV2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NIIH12 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NLS2AK Arachis hypogaea
AT5G48720 Arabidopsis thaliana
ATR1147G016 Amborella trichopoda
Atru.chr1.3187 Acer truncatum
Atru.chr9.2214 Acer truncatum
AUR62001103 Chenopodium quinoa
AUR62008928 Chenopodium quinoa
BcaB07g30041 Brassica carinata
BcaC03g17671 Brassica carinata
BcaC04g23764 Brassica carinata
BcaC06g30764 Brassica carinata
BolC2t11746H Brassica oleracea
BolC7t44457H Brassica oleracea
BolC9t53420H Brassica oleracea
BraA02t08751Z Brassica rapa
BraA06t26810Z Brassica rapa
BraA09t36096Z Brassica rapa
C02p56780 Brassica napus
C07p39370 Brassica napus
C09p04920 Brassica napus
CAN.G1402.7 Capsicum annuum
CANSAT01G2234 Cannabis sativa
CARHR183170 Cardamine hirsuta
Carub.0008s0847 Capsella rubella
Ca_17420_v3 Cicer arietinum L.
Ca_26921_v3 Cicer arietinum L.
Cc01_g16890 Coffea canephora
Cc03_g04120 Coffea canephora
CDE02G1932 Ceratophyllum demersum
CDE05G2570 Ceratophyllum demersum
CDE05G2723 Ceratophyllum demersum
CDE06G0847 Ceratophyllum demersum
Ciclev10021149m.g Citrus clementina
Ciclev10028898m.g Citrus clementina
CiPaw.03G148100 Carya illinoinensis
CiPaw.04G104600 Carya illinoinensis
ClCG07G001990 Citrullus lanatus
Cpa.g.sc8.139 Carica papaya
CsaV3_3G029960 Cucumis sativus L.
CSS0028538 Camellia sinensis var. sinensis
CSS0043801 Camellia sinensis var. sinensis
DCAR_001774 Daucus carota
DCAR_004730 Daucus carota
DCAR_029194 Daucus carota
Dinv19191 Davidia involucrata
Duzib133G1316 Durio zibethinus
Duzib138G0574 Durio zibethinus
Duzib211G0076 Durio zibethinus
ECA247G1071 Erigeron canadensis
ECA248G2219 Erigeron canadensis
EL10Ac7g17856 Beta vulgaris
Eucgr.H00791 Eucalyptus grandis
FAN15G3328 Fragaria x ananassa
FAN24G0460 Fragaria x ananassa
FAN27G2123 Fragaria x ananassa
FvH4_2g18790 Fragaria vesca
Glyma.03G064200 Glycine max
Glyma.08G351100 Glycine max
Glyma.16G094900 Glycine max
Glyma.18G164900 Glycine max
Gohir.A07G157400 Gossypium hirsutum
Gohir.A07G200600 Gossypium hirsutum
Gohir.A08G195150 Gossypium hirsutum
Gohir.D07G163800 Gossypium hirsutum
Gohir.D07G206900 Gossypium hirsutum
Gohir.D08G212628 Gossypium hirsutum
Gorai.001G187500 Gossypium raimondii
Gorai.001G233300 Gossypium raimondii
Gorai.004G226300 Gossypium raimondii
HanXRQChr01g0015201 Helianthus annuus
HanXRQChr10g0279401 Helianthus annuus
Haze_24816 Corylus avellana
Hma1.2p1_0226F.1_g095560 Hydrangea macrophylla
HPP92_000350 Vanilla planifolia
HPP92_000417 Vanilla planifolia
HPP92_020220 Vanilla planifolia
Hund05564 Selenicereus undatus
Lalb_Chr01g0022271 Lupinus albus
Lalb_Chr07g0194281 Lupinus albus
Lalb_Chr12g0209961 Lupinus albus
Lalb_Chr19g0125701 Lupinus albus
Lj1g0007221 Lotus japonicus
Lj2A1128G42 Lonicera japonica
Lj3g0005113 Lotus japonicus
Lsat_1_v5_gn_5_180561 Lactuca sativa
Lsat_1_v5_gn_9_12441 Lactuca sativa
Manes.12G046200 Manihot esculenta
Manes.13G046800 Manihot esculenta
Manes.13G046900 Manihot esculenta
Mapoly0014s0143 Marchantia polymorpha
MBI07_g28644_MAGBIO Magnolia biondii
MBI11_g07427_MAGBIO Magnolia biondii
MD05G1173900 Malus domestica
MD10G1161800 Malus domestica
Medtr7g056400 Medicago truncatula
Medtr8g013095 Medicago truncatula
MELO3C024046.2 Cucumis melo
Migut.G00369 Erythranthe guttata
Migut.N00203 Erythranthe guttata
MSTRG.21867 Avicennia marina
MSTRG.24730 Avicennia marina
MSTRG.4050 Avicennia marina
MSTRG.9963 Avicennia marina
Nitab4.5_0000085g0290 Nicotiana tabacum
Nitab4.5_0001564g0080 Nicotiana tabacum
Nitab4.5_0002406g0020 Nicotiana tabacum
Nitab4.5_0012390g0020 Nicotiana tabacum
Nn1g02290 Nelumbo nucifera
Nn1g07918 Nelumbo nucifera
Nn3g20001 Nelumbo nucifera
Nn8g40931 Nelumbo nucifera
Oeu042809.1 Olea europaea
Oeu042810.1 Olea europaea
Oeu053312.2 Olea europaea
Oeu058965.1 Olea europaea
Os01g0918100 Oryza sativa ssp. japonica
Os04g0376600 Oryza sativa ssp. japonica
Os09g0401900 Oryza sativa ssp. japonica
Peaxi162Scf00245g01013 Petunia axillaris
Peaxi162Scf00517g00628 Petunia axillaris
Peaxi162Scf00520g00078 Petunia axillaris
PGR083G1672 Punica granatum
PGSC0003DMG400020162 Solanum tuberosum
PGSC0003DMG400032241 Solanum tuberosum
Phvul.003G170700 Phaseolus vulgaris
Phvul.008G128100 Phaseolus vulgaris
Phvul.010G020000 Phaseolus vulgaris
Potri.002G244000 Populus trichocarpa
Potri.014G190000 Populus trichocarpa
Pp3c20_1610 Physcomitrium patens
Pp3c23_18480 Physcomitrium patens
Pp3c24_14710 Physcomitrium patens
Pp3c8_22780 Physcomitrium patens
Prupe.8G201300 Prunus persica
Psat0s4384g0080 Pisum sativum
Psat3g147480 Pisum sativum
Psat6g137760 Pisum sativum
PSO170G0299 Papaver somniferum
PSO357G0522 Papaver somniferum
QL05p058688 Quercus lobata
QL09p053183 Quercus lobata
RcHm_v2.0_Chr6g0284531 Rosa chinensis
Rhsim01G0255100 Rhododendron simsii
Sabra02G0185700 Salix brachista
Sabra14G0142800 Salix brachista
SalBow2G2780 Salvia bowleyana
SalBow3G1406 Salvia bowleyana
Sc05g0002030 Simmondsia chinensis
Sc17g0001630 Simmondsia chinensis
Sc17g0002270 Simmondsia chinensis
Sc24g0000190 Simmondsia chinensis
Sc24g0003510 Simmondsia chinensis
Sed0000990 Sechium edule
Sed0004220 Sechium edule
SEGI_35626 Sequoiadendron giganteum
SGA_v2.0_scaffold165G38284 Striga asiatica
SGA_v2.0_scaffold79G25582 Striga asiatica
SHI35373 Sapria himalayana
SMO275G0022 Selaginella moellendorffii
SMO367G0329 Selaginella moellendorffii
Solyc06g083410.4 Solanum lycopersicum
Solyc09g082490.4 Solanum lycopersicum
Sopen06g034770 Solanum pennellii
Sopen09g031350 Solanum pennellii
Sp2g19130 Schrenkiella parvula
TAR636G3032 Trochodendron aralioides
THA.LOC104802669 Tarenaya hassleriana
THA.LOC104818962 Tarenaya hassleriana
THA.LOC104822499 Tarenaya hassleriana
Thecc.01G224000 Theobroma cacao
Thhalv10004684m.g Eutrema salsugineum
TPR.G14528 Trifolium pratense
TPR.G17145 Trifolium pratense
TWI18G0281 Tripterygium wilfordii
TWI60G1308 Tripterygium wilfordii
TWI75G1556 Tripterygium wilfordii
TWI81G0623 Tripterygium wilfordii
unitig_748.g7299 Utricularia gibba
unitig_748.g8333 Utricularia gibba
vmacro14746 Vaccinium macrocarpon
VMungo0331G0848 Vigna mungo
VMungo1383G3594 Vigna mungo
Zm00001eb085950 Zea mays
Zm00001eb143390 Zea mays
Zm00001eb420720 Zea mays

User provided reference genes

Program Settings