Gene: AT5G48720
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G48720
- Transcript Identifier AT5G48720.2
- Gene Type Coding gene
- Location Chr5 : 19759233-19761621 : positive
Gene Family Information
- ID HOM05D003415
- #Genes/#Species 200/92
- Phylogenetic origin
- ID ORTHO05D001594
- #Genes/#Species 384/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G48720.2
- symbol XRI1
- Alias XRI,X-RAY INDUCED TRANSCRIPT
- full_name X-RAY INDUCED TRANSCRIPT 1
- uniprot Q6NLW5
Descriptions
- Description x-ray induced transcript 1
- Computational description X-RAY INDUCED TRANSCRIPT 1 (XRI1); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 117 Blast hits to 117 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Computational description X-RAY INDUCED TRANSCRIPT 1 (XRI1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA repair, female meiosis, response to X-ray, pollen development, male meiosis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 123 Blast hits to 123 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | IMP | Gene Ontology | DNA repair | 1 |
| GO:0007140 | IEA | GOA Database | male meiotic nuclear division | |
| GO:0007140 | IMP | Gene Ontology | male meiotic nuclear division | 1 |
| GO:0007140 | IEA | InterPro | male meiotic nuclear division | |
| GO:0007143 | IEA | GOA Database | female meiotic nuclear division | |
| GO:0007143 | IMP | Gene Ontology | female meiotic nuclear division | 1 |
| GO:0007143 | IEA | InterPro | female meiotic nuclear division | |
| GO:0009555 | IMP | Gene Ontology | pollen development | 1 |
| GO:0010165 | IEP | Gene Ontology | response to X-ray | 1 |
| GO:0051321 | IEA | GOA Database | meiotic cell cycle |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR039933 | Protein XRI1 |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |