Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p10450 Brassica napus
A07p06270 Brassica napus
Aa31sc133G60 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.920 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4786 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4791 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.362 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.363 Anthoceros agrestis
Actinidia29348 Actinidia chinensis
Actinidia29929 Actinidia chinensis
Ah.09g231590 Amaranthus hybridus
AL1G20670 Arabidopsis lyrata
AL3G43680 Arabidopsis lyrata
AL6G32870 Arabidopsis lyrata
Aqoxy7G03984 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7WMI9V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.81HHLD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C19Y0U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MFQ8D7 Arachis hypogaea
AT2G06040 Arabidopsis thaliana
AT5G21900 Arabidopsis thaliana
ATR0598G291 Amborella trichopoda
ATR0749G051 Amborella trichopoda
Atru.chr7.1699 Acer truncatum
AUR62025246 Chenopodium quinoa
AUR62028939 Chenopodium quinoa
AUR62042996 Chenopodium quinoa
BcaB01g04757 Brassica carinata
BcaB06g26884 Brassica carinata
BcaC06g35953 Brassica carinata
BolC3t13673H Brassica oleracea
BolC7t41350H Brassica oleracea
BraA03t10357Z Brassica rapa
BraA07t28422Z Brassica rapa
C03p12020 Brassica napus
C07p09320 Brassica napus
CAN.G498.3 Capsicum annuum
CAN.G63.8 Capsicum annuum
CANSAT56G0327 Cannabis sativa
CARHR103720 Cardamine hirsuta
CARHR191640 Cardamine hirsuta
Carub.0003s2717 Capsella rubella
Carub.0006s1954 Capsella rubella
Ca_21319_v3 Cicer arietinum L.
Ca_23417_v3 Cicer arietinum L.
CBR_g28657 Chara braunii
Cc06_g12060 Coffea canephora
Cc08_g01130 Coffea canephora
Cfa002995 Carpinus fangiana
Cfa002996 Carpinus fangiana
Cfa018072 Carpinus fangiana
Ciclev10007604m.g Citrus clementina
Ciclev10010155m.g Citrus clementina
CiPaw.03G207100 Carya illinoinensis
ClCG03G015120 Citrullus lanatus
COL.COLO4_18104 Corchorus olitorius
COL.COLO4_21141 Corchorus olitorius
Cpa.g.sc126.22 Carica papaya
Cpa.g.sc28.54 Carica papaya
Cre12.g559050 Chlamydomonas reinhardtii
CsaV3_1G040990 Cucumis sativus L.
CSS0017754 Camellia sinensis var. sinensis
DCAR_001231 Daucus carota
DCAR_004378 Daucus carota
DCAR_028330 Daucus carota
Dinv41844 Davidia involucrata
Dinv42387 Davidia involucrata
Duzib168G0118 Durio zibethinus
Duzib168G1355 Durio zibethinus
ECA240G4381 Erigeron canadensis
EL10Ac8g19064 Beta vulgaris
Eucgr.C00817 Eucalyptus grandis
FAN16G0651 Fragaria x ananassa
FAN19G2419 Fragaria x ananassa
FAN23G1713 Fragaria x ananassa
FAN26G0708 Fragaria x ananassa
FAN26G2208 Fragaria x ananassa
FAN28G0340 Fragaria x ananassa
FvH4_1g08600 Fragaria vesca
Glyma.09G069401 Glycine max
Glyma.13G110100 Glycine max
Glyma.15G177400 Glycine max
Glyma.17G049600 Glycine max
Gohir.A06G076100 Gossypium hirsutum
Gohir.A07G019500 Gossypium hirsutum
Gohir.D06G075100 Gossypium hirsutum
Gohir.D07G019300 Gossypium hirsutum
Gorai.001G020000 Gossypium raimondii
Gorai.010G087700 Gossypium raimondii
GSVIVG01015088001 Vitis vinifera
GSVIVG01035471001 Vitis vinifera
HanXRQChr03g0065631 Helianthus annuus
HanXRQChr09g0237821 Helianthus annuus
Haze_26007 Corylus avellana
Hma1.2p1_0003F.1_g003640 Hydrangea macrophylla
Hma1.2p1_0169F.1_g074590 Hydrangea macrophylla
Hma1.2p1_0169F.1_g074607 Hydrangea macrophylla
HPP92_004371 Vanilla planifolia
Hund08778 Selenicereus undatus
Lalb_Chr07g0181161 Lupinus albus
Lalb_Chr23g0276391 Lupinus albus
Lj1g0018915 Lotus japonicus
Lj4g0026519 Lotus japonicus
Lj6g0021845 Lotus japonicus
Lj7A221G28 Lonicera japonica
Lj7A686T70 Lonicera japonica
Lj7C221T9 Lonicera japonica
Lsat_1_v5_gn_7_35060 Lactuca sativa
Manes.03G053200 Manihot esculenta
Manes.16G095800 Manihot esculenta
MBI19_g11829_MAGBIO Magnolia biondii
MD02G1090200 Malus domestica
MD02G1090300 Malus domestica
MD15G1216800 Malus domestica
Medtr2g041610 Medicago truncatula
Medtr3g435660 Medicago truncatula
Medtr4g125390 Medicago truncatula
Medtr4g125410 Medicago truncatula
Medtr4g125430 Medicago truncatula
Medtr4g125440 Medicago truncatula
MELO3C015517.2 Cucumis melo
Migut.A00075 Erythranthe guttata
Migut.L01559 Erythranthe guttata
MSTRG.10519 Avicennia marina
MSTRG.25987 Avicennia marina
Nitab4.5_0000320g0100 Nicotiana tabacum
Nitab4.5_0000343g0140 Nicotiana tabacum
Nitab4.5_0000446g0150 Nicotiana tabacum
Nitab4.5_0002966g0040 Nicotiana tabacum
Nitab4.5_0008422g0030 Nicotiana tabacum
Nn6g35618 Nelumbo nucifera
Oeu011417.1 Olea europaea
Oeu018029.1 Olea europaea
Oeu026868.1 Olea europaea
Oeu063419.1 Olea europaea
Os08g0459100 Oryza sativa ssp. japonica
Peaxi162Scf00127g00131 Petunia axillaris
Peaxi162Scf00486g01021 Petunia axillaris
PGR142G0733 Punica granatum
PGSC0003DMG400013008 Solanum tuberosum
PGSC0003DMG400018807 Solanum tuberosum
Phvul.003G131200 Phaseolus vulgaris
Phvul.007G217300 Phaseolus vulgaris
Phvul.007G245833 Phaseolus vulgaris
Phvul.009G227500 Phaseolus vulgaris
Potri.006G142200 Populus trichocarpa
Potri.006G220600 Populus trichocarpa
PRCOL_00004656 Prasinoderma coloniale
Prupe.7G199800 Prunus persica
Psat1g134160 Pisum sativum
Psat4g017720 Pisum sativum
Psat4g017760 Pisum sativum
Psat4g017800 Pisum sativum
Psat4g030640 Pisum sativum
Psat4g155280 Pisum sativum
PSO135G1032 Papaver somniferum
PSO210G7636 Papaver somniferum
QL11p000685 Quercus lobata
RcHm_v2.0_Chr2g0094821 Rosa chinensis
Rhsim01G0183000 Rhododendron simsii
Rhsim03G0227900 Rhododendron simsii
Sabra06G0111300 Salix brachista
Sabra06G0170300 Salix brachista
SalBow4G1263 Salvia bowleyana
Sc18g0002500 Simmondsia chinensis
Sed0002159 Sechium edule
Sed0023098 Sechium edule
SEGI_10530 Sequoiadendron giganteum
SEGI_14499 Sequoiadendron giganteum
SEGI_25513 Sequoiadendron giganteum
SEGI_37822 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09159 Striga asiatica
SGA_v2.0_scaffold21G09482 Striga asiatica
SHI33751 Sapria himalayana
Solyc08g061650.4 Solanum lycopersicum
Sopen00g008950 Solanum pennellii
Sopen07g021250 Solanum pennellii
Sopen08g017110 Solanum pennellii
Sopen08g017120 Solanum pennellii
Sp3g24620 Schrenkiella parvula
Sp6g23290 Schrenkiella parvula
TAR624G0435 Trochodendron aralioides
TAR626G1452 Trochodendron aralioides
TAR626G1699 Trochodendron aralioides
THA.LOC104799577 Tarenaya hassleriana
THA.LOC104815331 Tarenaya hassleriana
Thecc.09G063600 Theobroma cacao
Thecc.09G078000 Theobroma cacao
Thhalv10002406m.g Eutrema salsugineum
Thhalv10015473m.g Eutrema salsugineum
TPR.G28585 Trifolium pratense
TPR.G55 Trifolium pratense
TPR.G9461 Trifolium pratense
TWI32G0197 Tripterygium wilfordii
TWI34G1043 Tripterygium wilfordii
TWI34G1197 Tripterygium wilfordii
vmacro06337 Vaccinium macrocarpon
vmacro06338 Vaccinium macrocarpon
vmacro12621 Vaccinium macrocarpon
VMungo1215G0865 Vigna mungo
VMungo1309G0541 Vigna mungo
Zm00001eb040360 Zea mays
Zm00001eb042910 Zea mays
Zm00001eb092030 Zea mays
Zm00001eb177300 Zea mays
Zm00001eb402190 Zea mays

User provided reference genes

Program Settings