Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p46190 Brassica napus
A05p24600 Brassica napus
A07p04130 Brassica napus
A09p11160 Brassica napus
Aa31LG8G14130 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2863 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.2866 Anthoceros agrestis
Actinidia18041 Actinidia chinensis
Actinidia20525 Actinidia chinensis
Ah.13g069530 Amaranthus hybridus
Ah.13g069540 Amaranthus hybridus
AL3G49700 Arabidopsis lyrata
AL3G49720 Arabidopsis lyrata
Aqoxy5G01104 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.47PMEA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ASV0B9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L5LJLM Arachis hypogaea
AT2G16950 Arabidopsis thaliana
AT2G16953 Arabidopsis thaliana
AT2G16960 Arabidopsis thaliana
ATR0665G341 Amborella trichopoda
Atru.chr13.221 Acer truncatum
Atru.chr13.222 Acer truncatum
Atru.chr5.3440 Acer truncatum
AUR62011064 Chenopodium quinoa
AUR62033441 Chenopodium quinoa
BcaB03g16429 Brassica carinata
BcaB08g34680 Brassica carinata
BcaC01g02966 Brassica carinata
BcaC04g23002 Brassica carinata
BcaC06g36202 Brassica carinata
BolC3t18044H Brassica oleracea
BolC7t41074H Brassica oleracea
BolC9t54210H Brassica oleracea
BraA03t13744Z Brassica rapa
BraA05t21345Z Brassica rapa
BraA07t28204Z Brassica rapa
BraA09t36758Z Brassica rapa
C03p57710 Brassica napus
C07p06530 Brassica napus
C09p13150 Brassica napus
CAN.G588.99 Capsicum annuum
CANSAT25G3225 Cannabis sativa
CARHR107250 Cardamine hirsuta
Carub.0003s3076 Capsella rubella
Carub.0003s3078 Capsella rubella
Carub.0003s3079 Capsella rubella
Ca_03296_v3 Cicer arietinum L.
CBR_g22065 Chara braunii
Cc09_g10320 Coffea canephora
CDE06G0864 Ceratophyllum demersum
CDE06G1850 Ceratophyllum demersum
CDE08G0902 Ceratophyllum demersum
Cfa005285 Carpinus fangiana
Ciclev10027778m.g Citrus clementina
CiPaw.05G085300 Carya illinoinensis
CiPaw.06G120100 Carya illinoinensis
ClCG02G012090 Citrullus lanatus
COL.COLO4_17378 Corchorus olitorius
COL.COLO4_26088 Corchorus olitorius
COL.COLO4_26089 Corchorus olitorius
Cpa.g.c47546 Carica papaya
Cpa.g.sc20.112 Carica papaya
Cpa.g.sc20.113 Carica papaya
Cpa.g.sc20.114 Carica papaya
Cpa.g.sc7210.1 Carica papaya
Cre12.g520550 Chlamydomonas reinhardtii
CsaV3_2G013910 Cucumis sativus L.
CsaV3_2G016250 Cucumis sativus L.
CSS0005434 Camellia sinensis var. sinensis
CSS0041068 Camellia sinensis var. sinensis
DCAR_001344 Daucus carota
DCAR_001345 Daucus carota
DCAR_022960 Daucus carota
Dinv14126 Davidia involucrata
Dinv41918 Davidia involucrata
Duzib052G0573 Durio zibethinus
Duzib093G0144 Durio zibethinus
ECA196G0013 Erigeron canadensis
EL10Ac8g18581 Beta vulgaris
Eucgr.F03709 Eucalyptus grandis
FAN15G1272 Fragaria x ananassa
FAN20G0010 Fragaria x ananassa
FAN20G2853 Fragaria x ananassa
FAN24G0254 Fragaria x ananassa
FAN25G3698 Fragaria x ananassa
FAN27G1670 Fragaria x ananassa
FvH4_2g15650 Fragaria vesca
Glyma.10G283400 Glycine max
Glyma.20G106300 Glycine max
Gohir.A01G002000 Gossypium hirsutum
Gohir.A01G170600 Gossypium hirsutum
Gohir.A03G205850 Gossypium hirsutum
Gohir.D01G001600 Gossypium hirsutum
Gohir.D01G161600 Gossypium hirsutum
Gohir.D02G227200 Gossypium hirsutum
Gohir.D03G055000 Gossypium hirsutum
Gohir.D04G121100 Gossypium hirsutum
Gohir.D05G317050 Gossypium hirsutum
Gohir.D05G367000 Gossypium hirsutum
Gohir.D06G154450 Gossypium hirsutum
Gohir.D07G180400 Gossypium hirsutum
Gohir.D09G053166 Gossypium hirsutum
Gohir.D10G169500 Gossypium hirsutum
Gohir.D11G257966 Gossypium hirsutum
Gohir.D12G149400 Gossypium hirsutum
Gorai.002G002200 Gossypium raimondii
Gorai.002G122100 Gossypium raimondii
Gorai.002G200500 Gossypium raimondii
Gorai.003G112600 Gossypium raimondii
Gorai.005G255100 Gossypium raimondii
Gorai.008G128700 Gossypium raimondii
Gorai.010G187400 Gossypium raimondii
Gorai.011G120400 Gossypium raimondii
Gorai.012G059000 Gossypium raimondii
GSVIVG01008744001 Vitis vinifera
GSVIVG01023974001 Vitis vinifera
HanXRQChr02g0040581 Helianthus annuus
HanXRQChr04g0110121 Helianthus annuus
HanXRQChr09g0248871 Helianthus annuus
HanXRQChr13g0410581 Helianthus annuus
Haze_02105 Corylus avellana
Haze_20015 Corylus avellana
Haze_26729 Corylus avellana
Hma1.2p1_0144F.1_g064770 Hydrangea macrophylla
HPP92_006849 Vanilla planifolia
HPP92_006865 Vanilla planifolia
HPP92_006866 Vanilla planifolia
Lalb_Chr02g0143501 Lupinus albus
Lalb_Chr21g0307001 Lupinus albus
Lj5A176G61 Lonicera japonica
Lj5g0003348 Lotus japonicus
Lsat_1_v5_gn_1_6760 Lactuca sativa
Lsat_1_v5_gn_2_10360 Lactuca sativa
Lsat_1_v5_gn_9_73520 Lactuca sativa
Manes.05G143000 Manihot esculenta
Manes.11G097900 Manihot esculenta
Mapoly0057s0097 Marchantia polymorpha
MCO12G350 Micromonas commoda
MD05G1125000 Malus domestica
MD10G1127800 Malus domestica
Medtr1g112920 Medicago truncatula
MELO3C020836.2 Cucumis melo
Migut.E01296 Erythranthe guttata
MSTRG.12021 Avicennia marina
MSTRG.13818 Avicennia marina
Nitab4.5_0000079g0220 Nicotiana tabacum
Nitab4.5_0003698g0020 Nicotiana tabacum
Nitab4.5_0004867g0010 Nicotiana tabacum
Nitab4.5_0004867g0020 Nicotiana tabacum
Nitab4.5_0009111g0010 Nicotiana tabacum
Nn1g08447 Nelumbo nucifera
Nn3g21113 Nelumbo nucifera
Nn5g27766 Nelumbo nucifera
Oeu027804.1 Olea europaea
Oeu031591.4 Olea europaea
Os04g0691500 Oryza sativa ssp. japonica
Peaxi162Scf00078g01329 Petunia axillaris
Peaxi162Scf00362g00438 Petunia axillaris
Peaxi162Scf00362g00439 Petunia axillaris
PGR031G2444 Punica granatum
PGR142G0610 Punica granatum
Phvul.007G017800 Phaseolus vulgaris
Potri.004G177700 Populus trichocarpa
Potri.009G138200 Populus trichocarpa
Pp3c16_4650 Physcomitrium patens
Pp3c27_5090 Physcomitrium patens
Pp3c5_4970 Physcomitrium patens
Pp3c6_18200 Physcomitrium patens
PRCOL_00003157 Prasinoderma coloniale
Prupe.8G169000 Prunus persica
Psat0s626g0200 Pisum sativum
Psat6g232040 Pisum sativum
PSO170G1418 Papaver somniferum
PSO210G0009 Papaver somniferum
PSO210G6165 Papaver somniferum
PSO675G3496 Papaver somniferum
QL01p046809 Quercus lobata
RcHm_v2.0_Chr6g0278851 Rosa chinensis
Rhsim11G0193600 Rhododendron simsii
Sabra04G0119600 Salix brachista
Sabra09G0107100 Salix brachista
SalBow1G8529 Salvia bowleyana
Sc15g0002120 Simmondsia chinensis
Sed0004428 Sechium edule
Sed0023751 Sechium edule
SEGI_16409 Sequoiadendron giganteum
SEGI_18657 Sequoiadendron giganteum
SGA_v2.0_scaffold196G40882 Striga asiatica
SHI05776 Sapria himalayana
SMO174G0083 Selaginella moellendorffii
Solyc01g111780.4 Solanum lycopersicum
Sopen01g053820 Solanum pennellii
Sp3g30230 Schrenkiella parvula
TAR376G0505 Trochodendron aralioides
TAR625G1234 Trochodendron aralioides
THA.LOC104804319 Tarenaya hassleriana
THA.LOC104819659 Tarenaya hassleriana
Thecc.02G055400 Theobroma cacao
Thecc.08G051200 Theobroma cacao
Thhalv10022538m.g Eutrema salsugineum
TPR.G2434 Trifolium pratense
TWI14G0549 Tripterygium wilfordii
TWI31G0460 Tripterygium wilfordii
TWI39G0073 Tripterygium wilfordii
TWI75G1738 Tripterygium wilfordii
unitig_21.g20524 Utricularia gibba
unitig_21.g20525 Utricularia gibba
vmacro02292 Vaccinium macrocarpon
VMungo0720G0502 Vigna mungo
VMungo1127G1914 Vigna mungo
Zm00001eb076490 Zea mays
Zm00001eb434450 Zea mays

User provided reference genes

Program Settings