Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p20800 Brassica napus
A04p28880 Brassica napus
A05p08280 Brassica napus
Aa31LG8G11740 Aethionema arabicum
Aa31sc70G90 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1733 Anthoceros agrestis
Actinidia06676 Actinidia chinensis
Actinidia06777 Actinidia chinensis
Actinidia38953 Actinidia chinensis
Ah.09g228380 Amaranthus hybridus
AL4G34620 Arabidopsis lyrata
Aqoxy4G01990 Aquilegia oxysepala
Aqoxy6G02795 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.H397QS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I3FRE1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea
AT2G05140 Arabidopsis thaliana
AT2G37690 Arabidopsis thaliana
ATR0111G007 Amborella trichopoda
Atru.chr2.868 Acer truncatum
Atru.chr2.869 Acer truncatum
AUR62010228 Chenopodium quinoa
AUR62027480 Chenopodium quinoa
AUR62033001 Chenopodium quinoa
AUR62033998 Chenopodium quinoa
BcaB01g03763 Brassica carinata
BcaB02g09259 Brassica carinata
BcaB03g16660 Brassica carinata
BcaB06g29020 Brassica carinata
BcaC01g05601 Brassica carinata
BcaC02g07498 Brassica carinata
BcaC04g20281 Brassica carinata
BolC3t14843H Brassica oleracea
BolC4t28117H Brassica oleracea
BolC9t57426H Brassica oleracea
BraA03t11320Z Brassica rapa
BraA04t18362Z Brassica rapa
BraA05t19794Z Brassica rapa
C03p24440 Brassica napus
C04p66140 Brassica napus
C09p45540 Brassica napus
CAN.G143.64 Capsicum annuum
CANSAT54G0311 Cannabis sativa
CARHR131850 Cardamine hirsuta
Carub.0004s1964 Capsella rubella
Ca_10033_v3 Cicer arietinum L.
CBR_g8948 Chara braunii
Cc02_g09140 Coffea canephora
Cc06_g22420 Coffea canephora
CDE05G0407 Ceratophyllum demersum
CDE05G1140 Ceratophyllum demersum
CDE11G0603 Ceratophyllum demersum
Cfa025150 Carpinus fangiana
Ciclev10003992m.g Citrus clementina
Ciclev10021626m.g Citrus clementina
Ciclev10027983m.g Citrus clementina
CiPaw.08G119500 Carya illinoinensis
ClCG11G008930 Citrullus lanatus
COL.COLO4_15406 Corchorus olitorius
Cpa.g.sc162.3 Carica papaya
Cpa.g.sc162.4 Carica papaya
Cre12.g503300 Chlamydomonas reinhardtii
CsaV3_2G033180 Cucumis sativus L.
CSS0009274 Camellia sinensis var. sinensis
CSS0017783 Camellia sinensis var. sinensis
CSS0018975 Camellia sinensis var. sinensis
CSS0027773 Camellia sinensis var. sinensis
CSS0035771 Camellia sinensis var. sinensis
DCAR_001864 Daucus carota
DCAR_028952 Daucus carota
DCAR_028953 Daucus carota
Dinv05722 Davidia involucrata
Duzib128G1665 Durio zibethinus
ECA248G3699 Erigeron canadensis
EL10Ac8g19239 Beta vulgaris
Eucgr.J00270 Eucalyptus grandis
FAN02G2337 Fragaria x ananassa
FAN05G1365 Fragaria x ananassa
FAN08G2202 Fragaria x ananassa
FAN09G3226 Fragaria x ananassa
FAN09G3766 Fragaria x ananassa
FAN09G4428 Fragaria x ananassa
FAN11G2158 Fragaria x ananassa
FAN12G0237 Fragaria x ananassa
FAN12G4313 Fragaria x ananassa
FAN14G5085 Fragaria x ananassa
FAN18G4088 Fragaria x ananassa
FAN18G4090 Fragaria x ananassa
FAN20G0704 Fragaria x ananassa
FvH4_5g12790 Fragaria vesca
FvH4_6g42830 Fragaria vesca
Glyma.01G101050 Glycine max
Glyma.10G163700 Glycine max
Glyma.20G226300 Glycine max
Gohir.A09G017500 Gossypium hirsutum
Gohir.A11G250300 Gossypium hirsutum
Gohir.D11G260700 Gossypium hirsutum
Gohir.D13G031700 Gossypium hirsutum
Gorai.007G279200 Gossypium raimondii
Gorai.007G279300 Gossypium raimondii
Gorai.013G036100 Gossypium raimondii
GSVIVG01036258001 Vitis vinifera
GSVIVG01036259001 Vitis vinifera
HanXRQChr04g0112121 Helianthus annuus
HanXRQChr05g0152861 Helianthus annuus
Haze_04383 Corylus avellana
Haze_20967 Corylus avellana
Haze_27599 Corylus avellana
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla
HPP92_021777 Vanilla planifolia
Hund02191 Selenicereus undatus
Lalb_Chr06g0166701 Lupinus albus
Lalb_Chr06g0166711 Lupinus albus
Lalb_Chr06g0166731 Lupinus albus
Lalb_Chr06g0166741 Lupinus albus
Lalb_Chr06g0166751 Lupinus albus
Lalb_Chr06g0168161 Lupinus albus
Lalb_Chr21g0311061 Lupinus albus
Lj3C918G0 Lonicera japonica
Lj5g0023348 Lotus japonicus
Lsat_1_v5_gn_3_106720 Lactuca sativa
Lsat_1_v5_gn_9_121981 Lactuca sativa
Manes.15G108700 Manihot esculenta
Mapoly0046s0034 Marchantia polymorpha
MBI12_g21500_MAGBIO Magnolia biondii
MCO10G267 Micromonas commoda
MD04G1227600 Malus domestica
MD12G1244300 Malus domestica
Medtr1g080500 Medicago truncatula
MELO3C008089.2 Cucumis melo
Migut.F01579 Erythranthe guttata
MSTRG.927 Avicennia marina
Nitab4.5_0000261g0140 Nicotiana tabacum
Nitab4.5_0001462g0060 Nicotiana tabacum
Nitab4.5_0001781g0080 Nicotiana tabacum
Nitab4.5_0007901g0030 Nicotiana tabacum
Nitab4.5_0011494g0040 Nicotiana tabacum
Nn1g02653 Nelumbo nucifera
Nn1g02664 Nelumbo nucifera
Nn3g19572 Nelumbo nucifera
Oeu054532.1 Olea europaea
Os01g0199900 Oryza sativa ssp. japonica
Peaxi162Scf00120g00723 Petunia axillaris
Peaxi162Scf00135g01116 Petunia axillaris
PGR031G1742 Punica granatum
PGSC0003DMG400000995 Solanum tuberosum
PGSC0003DMG400002182 Solanum tuberosum
Phvul.007G188800 Phaseolus vulgaris
Potri.013G043500 Populus trichocarpa
Potri.019G012300 Populus trichocarpa
Pp3c2_24240 Physcomitrium patens
PRCOL_00005277 Prasinoderma coloniale
Prupe.6G346800 Prunus persica
Psat6g145160 Pisum sativum
PSO170G0868 Papaver somniferum
PSO170G3230 Papaver somniferum
PSO541G5176 Papaver somniferum
PSO675G5476 Papaver somniferum
PSO782G2231 Papaver somniferum
PSO782G2873 Papaver somniferum
QL01p030114 Quercus lobata
QL03p028499 Quercus lobata
QL07p003261 Quercus lobata
RcHm_v2.0_Chr3g0450361 Rosa chinensis
RcHm_v2.0_Chr6g0278951 Rosa chinensis
RcHm_v2.0_Chr7g0214531 Rosa chinensis
Rhsim01G0186900 Rhododendron simsii
Rhsim05G0176200 Rhododendron simsii
Rhsim05G0177800 Rhododendron simsii
Sabra13G0039800 Salix brachista
Sabra19G0017400 Salix brachista
Sabra19G0024900 Salix brachista
Sabra19G0025000 Salix brachista
Sabra19G0025100 Salix brachista
Sabra19G0025200 Salix brachista
Sabra19G0025400 Salix brachista
Sabra19G0025600 Salix brachista
Sabra19G0025800 Salix brachista
Sabra19G0025900 Salix brachista
SalBow8G0718 Salvia bowleyana
Sc06g0010270 Simmondsia chinensis
Sed0012102 Sechium edule
Sed0018461 Sechium edule
SEGI_03130 Sequoiadendron giganteum
SEGI_11174 Sequoiadendron giganteum
SEGI_17525 Sequoiadendron giganteum
SEGI_34284 Sequoiadendron giganteum
SEGI_37742 Sequoiadendron giganteum
SGA_v2.0_scaffold4G01959 Striga asiatica
SHI06090 Sapria himalayana
SHI06091 Sapria himalayana
SMO270G0125 Selaginella moellendorffii
SMO358G0312 Selaginella moellendorffii
Solyc11g006340.2 Solanum lycopersicum
Sopen11g002240 Solanum pennellii
Sp4g20070 Schrenkiella parvula
TAR362G0177 Trochodendron aralioides
TAR362G0530 Trochodendron aralioides
TAR362G1104 Trochodendron aralioides
TAR406G0002 Trochodendron aralioides
THA.LOC104799866 Tarenaya hassleriana
THA.LOC104808027 Tarenaya hassleriana
Thecc.05G277700 Theobroma cacao
Thhalv10016367m.g Eutrema salsugineum
TPR.G10778 Trifolium pratense
TPR.G26626 Trifolium pratense
TPR.G33936 Trifolium pratense
TWI81G0941 Tripterygium wilfordii
unitig_22.g5684 Utricularia gibba
vmacro19526 Vaccinium macrocarpon
vmacro20008 Vaccinium macrocarpon
VMungo0720G2291 Vigna mungo
VMungo0720G3029 Vigna mungo
Zm00001eb120570 Zea mays
Zm00001eb284760 Zea mays

User provided reference genes

Program Settings