Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p01360 Brassica napus
A04p33840 Brassica napus
A05p05470 Brassica napus
A09p53110 Brassica napus
Aa31LG10G15110 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3433 Anthoceros agrestis
Actinidia12693 Actinidia chinensis
Actinidia12694 Actinidia chinensis
Actinidia33461 Actinidia chinensis
Ah.07g206410 Amaranthus hybridus
Ah.15g095910 Amaranthus hybridus
AL4G44610 Arabidopsis lyrata
AL5G43200 Arabidopsis lyrata
Aqoxy7G00589 Aquilegia oxysepala
Aqoxy7G03282 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.40LNQG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8FE69Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G1X91R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GVW4KZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ITCI1L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TMXK2X Arachis hypogaea
AT2G45440 Arabidopsis thaliana
AT3G60880 Arabidopsis thaliana
ATR0618G366 Amborella trichopoda
Atru.chr3.3523 Acer truncatum
Atru.chr3.3524 Acer truncatum
Atru.chr4.3174 Acer truncatum
Atru.chr4.3175 Acer truncatum
AUR62021096 Chenopodium quinoa
AUR62031442 Chenopodium quinoa
BcaB02g08985 Brassica carinata
BcaB06g29423 Brassica carinata
BcaC02g07092 Brassica carinata
BcaC02g10194 Brassica carinata
BcaC02g12207 Brassica carinata
BcaC07g40606 Brassica carinata
BcaC07g40607 Brassica carinata
BcaC07g40608 Brassica carinata
BcaC07g42646 Brassica carinata
BcaNung07140 Brassica carinata
BolC4t22264H Brassica oleracea
BolC4t24720H Brassica oleracea
BolC4t28662H Brassica oleracea
BolC8t51171H Brassica oleracea
BraA04t15856Z Brassica rapa
BraA04t18844Z Brassica rapa
BraA05t19517Z Brassica rapa
BraA09t40737Z Brassica rapa
C04p06410 Brassica napus
C04p31710 Brassica napus
C04p71570 Brassica napus
C08p35810 Brassica napus
CAN.G82.28 Capsicum annuum
CAN.G841.5 Capsicum annuum
CANSAT56G0030 Cannabis sativa
CARHR140630 Cardamine hirsuta
CARHR171280 Cardamine hirsuta
Carub.0004s2805 Capsella rubella
Carub.0005s2763 Capsella rubella
Ca_07829_v3 Cicer arietinum L.
Ca_14539_v3 Cicer arietinum L.
Ca_23840_v3 Cicer arietinum L.
Ca_23841_v3 Cicer arietinum L.
Ca_29148_v3 Cicer arietinum L.
CBR_g48689 Chara braunii
Cc00_g10470 Coffea canephora
Cc08_g04960 Coffea canephora
CDE04G1842 Ceratophyllum demersum
CDE12G0255 Ceratophyllum demersum
Cfa001704 Carpinus fangiana
Cfa025895 Carpinus fangiana
Ciclev10001621m.g Citrus clementina
CiPaw.01G260800 Carya illinoinensis
CiPaw.02G166500 Carya illinoinensis
ClCG05G002140 Citrullus lanatus
COL.COLO4_12570 Corchorus olitorius
Cpa.g.sc18.130 Carica papaya
Cre02.g107300 Chlamydomonas reinhardtii
CsaV3_3G009570 Cucumis sativus L.
CSS0019750 Camellia sinensis var. sinensis
CSS0046017 Camellia sinensis var. sinensis
DCAR_006875 Daucus carota
DCAR_008564 Daucus carota
Dinv43724 Davidia involucrata
Duzib133G0879 Durio zibethinus
Duzib138G1152 Durio zibethinus
ECA236G2535 Erigeron canadensis
EL10Ac3g05392 Beta vulgaris
EL10Ac7g15845 Beta vulgaris
Eucgr.D02445 Eucalyptus grandis
Eucgr.E01410 Eucalyptus grandis
Eucgr.E01411 Eucalyptus grandis
Eucgr.E01412 Eucalyptus grandis
FAN01G1981 Fragaria x ananassa
FAN06G2385 Fragaria x ananassa
FAN06G4870 Fragaria x ananassa
FAN10G1836 Fragaria x ananassa
FAN10G3861 Fragaria x ananassa
FvH4_7g12060 Fragaria vesca
Glyma.03G022300 Glycine max
Glyma.09G268200 Glycine max
Glyma.18G221700 Glycine max
Gohir.A08G133200 Gossypium hirsutum
Gohir.A12G102000 Gossypium hirsutum
Gohir.D08G154500 Gossypium hirsutum
Gohir.D12G105200 Gossypium hirsutum
Gorai.004G160600 Gossypium raimondii
Gorai.008G114500 Gossypium raimondii
GSVIVG01027627001 Vitis vinifera
HanXRQChr04g0125701 Helianthus annuus
HanXRQChr16g0517911 Helianthus annuus
Haze_16829 Corylus avellana
Hma1.2p1_1793F.1_g302580 Hydrangea macrophylla
Hma1.2p1_3528F.1_g336590 Hydrangea macrophylla
HPP92_025608 Vanilla planifolia
Hund18766 Selenicereus undatus
Lalb_Chr01g0021351 Lupinus albus
Lalb_Chr03g0039131 Lupinus albus
Lalb_Chr07g0189671 Lupinus albus
Lalb_Chr12g0208331 Lupinus albus
Lj1g0009342 Lotus japonicus
Lj3g0001248 Lotus japonicus
Lj3g0003573 Lotus japonicus
Lj3g0008120 Lotus japonicus
Lj3g0023117 Lotus japonicus
Lj3g0023680 Lotus japonicus
Lj3g0025015 Lotus japonicus
Lj7A526G81 Lonicera japonica
Lj9C571T6 Lonicera japonica
Lsat_1_v5_gn_4_56041 Lactuca sativa
Lsat_1_v5_gn_7_19900 Lactuca sativa
Manes.01G154900 Manihot esculenta
Manes.02G113700 Manihot esculenta
Mapoly0001s0476 Marchantia polymorpha
MBI04_g32260_MAGBIO Magnolia biondii
MBI14_g08025_MAGBIO Magnolia biondii
MCO01G644 Micromonas commoda
MCO01G645 Micromonas commoda
MD02G1201600 Malus domestica
Medtr1g088775 Medicago truncatula
Medtr7g075090 Medicago truncatula
Medtr8g036020 Medicago truncatula
Medtr8g036035 Medicago truncatula
Medtr8g036040 Medicago truncatula
Medtr8g036050 Medicago truncatula
MELO3C006179.2 Cucumis melo
Migut.D02471 Erythranthe guttata
Migut.N00657 Erythranthe guttata
MSTRG.18812 Avicennia marina
MSTRG.20994 Avicennia marina
Nitab4.5_0000905g0070 Nicotiana tabacum
Nitab4.5_0004278g0030 Nicotiana tabacum
Nn1g01191 Nelumbo nucifera
Nn4g26434 Nelumbo nucifera
Oeu003490.3 Olea europaea
Oeu005999.1 Olea europaea
Oeu036605.1 Olea europaea
Os04g0254000 Oryza sativa ssp. japonica
Os04g0574800 Oryza sativa ssp. japonica
Peaxi162Scf00525g00079 Petunia axillaris
PGR042G3021 Punica granatum
PGSC0003DMG400019758 Solanum tuberosum
PGSC0003DMG400028240 Solanum tuberosum
Phvul.008G075400 Phaseolus vulgaris
Phvul.010G085500 Phaseolus vulgaris
Potri.002G149500 Populus trichocarpa
Potri.014G071100 Populus trichocarpa
Pp3c5_24750 Physcomitrium patens
Pp3c6_3950 Physcomitrium patens
PRCOL_00002865 Prasinoderma coloniale
Prupe.2G147200 Prunus persica
Psat3g114440 Pisum sativum
Psat4g149440 Pisum sativum
Psat4g149480 Pisum sativum
Psat4g149520 Pisum sativum
PSO478G0199 Papaver somniferum
PSO782G1714 Papaver somniferum
QL04p093729 Quercus lobata
QL08p052002 Quercus lobata
RcHm_v2.0_Chr1g0350811 Rosa chinensis
Rhsim05G0178900 Rhododendron simsii
Sabra02G0118300 Salix brachista
Sabra14G0050600 Salix brachista
SalBow3G0435 Salvia bowleyana
SalBow3G2333 Salvia bowleyana
SalBow6G3674 Salvia bowleyana
Sc01g0007880 Simmondsia chinensis
Sed0001702 Sechium edule
SEGI_35768 Sequoiadendron giganteum
SGA_v2.0_scaffold7G04025 Striga asiatica
SHI13516 Sapria himalayana
SMO239G0205 Selaginella moellendorffii
Solyc03g044660.3 Solanum lycopersicum
Solyc10g083110.3 Solanum lycopersicum
Sopen03g008930 Solanum pennellii
Sopen10g032580 Solanum pennellii
Sp4g27470 Schrenkiella parvula
Sp5g02370 Schrenkiella parvula
TAR629G0696 Trochodendron aralioides
TAR636G2275 Trochodendron aralioides
THA.LOC104801992 Tarenaya hassleriana
THA.LOC104817253 Tarenaya hassleriana
Thecc.01G374600 Theobroma cacao
Thhalv10001510m.g Eutrema salsugineum
Thhalv10006047m.g Eutrema salsugineum
TPR.G17473 Trifolium pratense
TPR.G17479 Trifolium pratense
TPR.G22338 Trifolium pratense
TPR.G26912 Trifolium pratense
TWI14G0461 Tripterygium wilfordii
TWI23G0310 Tripterygium wilfordii
unitig_26.g9426 Utricularia gibba
vmacro20018 Vaccinium macrocarpon
vmacro21000 Vaccinium macrocarpon
VMungo0251G1198 Vigna mungo
VMungo1383G2131 Vigna mungo
Zm00001eb073410 Zea mays
Zm00001eb389290 Zea mays

User provided reference genes

Program Settings