Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p18940 Brassica napus
A03p57410 Brassica napus
A08p10310 Brassica napus
Aa31LG7G11530 Aethionema arabicum
Aa31LG7G11540 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5685 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2897 Anthoceros agrestis
Actinidia29561 Actinidia chinensis
Actinidia38911 Actinidia chinensis
Actinidia39860 Actinidia chinensis
Ah.13g070600 Amaranthus hybridus
AL7G25070 Arabidopsis lyrata
Aqoxy2G00490 Aquilegia oxysepala
Aqoxy2G04101 Aquilegia oxysepala
Aqoxy5G00402 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2YN0NK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3K1ZLN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3K81QB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6AR5V7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9H48GU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9IK2W2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AET6M4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I0YB5S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I49W7B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T6DYUJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U29Z63 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UXIK5Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W3HBVG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZK5U33 Arachis hypogaea
AT3G58390 Arabidopsis thaliana
AT4G27650 Arabidopsis thaliana
ATR0609G064 Amborella trichopoda
ATR0743G097 Amborella trichopoda
Atru.chr12.2147 Acer truncatum
Atru.chr8.1700 Acer truncatum
Atru.chr8.1701 Acer truncatum
AUR62000365 Chenopodium quinoa
AUR62006711 Chenopodium quinoa
AUR62006712 Chenopodium quinoa
AUR62031139 Chenopodium quinoa
AUR62036544 Chenopodium quinoa
BcaB04g18111 Brassica carinata
BcaC06g32676 Brassica carinata
BcaC07g37718 Brassica carinata
BcaC09g50563 Brassica carinata
BcaNung01649 Brassica carinata
BolC1t02337H Brassica oleracea
BolC1t02338H Brassica oleracea
BolC7t46042H Brassica oleracea
BolC8t48097H Brassica oleracea
BraA01t01835Z Brassica rapa
BraA03t14807Z Brassica rapa
BraA08t33029Z Brassica rapa
BraA08t33030Z Brassica rapa
C01p23890 Brassica napus
C07p55620 Brassica napus
CAN.G186.68 Capsicum annuum
CAN.G541.24 Capsicum annuum
CANSAT54G1522 Cannabis sativa
CARHR168750 Cardamine hirsuta
CARHR235350 Cardamine hirsuta
Carub.0007s1320 Capsella rubella
Ca_09971_v3 Cicer arietinum L.
CBR_g24366 Chara braunii
Cc02_g09220 Coffea canephora
Cc02_g09230 Coffea canephora
CDE02G2540 Ceratophyllum demersum
Cfa006285 Carpinus fangiana
Cfa023687 Carpinus fangiana
Ciclev10013675m.g Citrus clementina
Ciclev10023555m.g Citrus clementina
CiPaw.02G065200 Carya illinoinensis
ClCG11G007480 Citrullus lanatus
COL.COLO4_06645 Corchorus olitorius
COL.COLO4_11895 Corchorus olitorius
COL.COLO4_22257 Corchorus olitorius
Cpa.g.c44271 Carica papaya
Cpa.g.sc123.20 Carica papaya
Cpa.g.sc123.22 Carica papaya
Cre09.g388615 Chlamydomonas reinhardtii
CsaV3_2G010350 Cucumis sativus L.
CSS0019586 Camellia sinensis var. sinensis
CSS0019916 Camellia sinensis var. sinensis
CSS0045595 Camellia sinensis var. sinensis
DCAR_014783 Daucus carota
DCAR_016022 Daucus carota
DCAR_023104 Daucus carota
Dinv36343 Davidia involucrata
Dinv37361 Davidia involucrata
Duzib128G0562 Durio zibethinus
Duzib128G1204 Durio zibethinus
Duzib177G0648 Durio zibethinus
ECA233G1402 Erigeron canadensis
EL10Ac1g01549 Beta vulgaris
EL10Ac4g09413 Beta vulgaris
Eucgr.B01382 Eucalyptus grandis
Eucgr.B01384 Eucalyptus grandis
FAN02G3775 Fragaria x ananassa
FAN02G4294 Fragaria x ananassa
FAN02G4520 Fragaria x ananassa
FAN05G0861 Fragaria x ananassa
FAN05G2101 Fragaria x ananassa
FAN05G5198 Fragaria x ananassa
FAN07G2794 Fragaria x ananassa
FAN09G4125 Fragaria x ananassa
FAN09G4293 Fragaria x ananassa
FAN09G4326 Fragaria x ananassa
FAN12G0407 Fragaria x ananassa
FAN14G1801 Fragaria x ananassa
FAN14G5565 Fragaria x ananassa
FAN17G2384 Fragaria x ananassa
FAN22G1543 Fragaria x ananassa
FvH4_4g33100 Fragaria vesca
FvH4_6g00790 Fragaria vesca
FvH4_6g17270 Fragaria vesca
Glyma.10G170200 Glycine max
Glyma.19G188500 Glycine max
Glyma.20G219800 Glycine max
Gohir.A04G068200 Gossypium hirsutum
Gohir.A08G224000 Gossypium hirsutum
Gohir.D08G244300 Gossypium hirsutum
Gorai.004G260600 Gossypium raimondii
GSVIVG01019146001 Vitis vinifera
GSVIVG01033716001 Vitis vinifera
HanXRQChr05g0156871 Helianthus annuus
Haze_04522 Corylus avellana
Haze_27288 Corylus avellana
Hma1.2p1_0171F.1_g075610 Hydrangea macrophylla
HPP92_011793 Vanilla planifolia
Hund07322 Selenicereus undatus
Hund20972 Selenicereus undatus
Lalb_Chr06g0168431 Lupinus albus
Lalb_Chr25g0288771 Lupinus albus
Lj1g0028191 Lotus japonicus
Lj2P124T66 Lonicera japonica
Lj5g0010554 Lotus japonicus
Lj7C705G3 Lonicera japonica
Lsat_1_v5_gn_8_2981 Lactuca sativa
Manes.08G104900 Manihot esculenta
Mapoly0014s0040 Marchantia polymorpha
MBI11_g04280_MAGBIO Magnolia biondii
MCO02G454 Micromonas commoda
MD04G1241200 Malus domestica
MD12G1258200 Malus domestica
Medtr1g078400 Medicago truncatula
Medtr7g102760 Medicago truncatula
MELO3C008594.2 Cucumis melo
Migut.F01553 Erythranthe guttata
MSTRG.9020 Avicennia marina
Nitab4.5_0000132g0470 Nicotiana tabacum
Nitab4.5_0006132g0060 Nicotiana tabacum
Nitab4.5_0007901g0020 Nicotiana tabacum
Nitab4.5_0009004g0010 Nicotiana tabacum
Nitab4.5_0010350g0020 Nicotiana tabacum
Nn3g20158 Nelumbo nucifera
Oeu033264.1 Olea europaea
Os04g0659900 Oryza sativa ssp. japonica
Peaxi162Scf00110g00082 Petunia axillaris
Peaxi162Scf00135g01111 Petunia axillaris
PGR119G1776 Punica granatum
PGSC0003DMG400025436 Solanum tuberosum
PGSC0003DMG400028274 Solanum tuberosum
Phvul.001G183700 Phaseolus vulgaris
Phvul.010G077790 Phaseolus vulgaris
Potri.004G092600 Populus trichocarpa
Potri.005G204500 Populus trichocarpa
Pp3c4_11130 Physcomitrium patens
PRCOL_00002239 Prasinoderma coloniale
Prupe.6G358700 Prunus persica
Prupe.7G122700 Prunus persica
Psat3g038280 Pisum sativum
Psat6g052120 Pisum sativum
PSO210G3889 Papaver somniferum
PSO357G0261 Papaver somniferum
QL05p031548 Quercus lobata
QL05p031553 Quercus lobata
QL05p031884 Quercus lobata
QL07p043239 Quercus lobata
QL93p1902_0613 Quercus lobata
RcHm_v2.0_Chr3g0448271 Rosa chinensis
RcHm_v2.0_Chr3g0471381 Rosa chinensis
RcHm_v2.0_Chr4g0442151 Rosa chinensis
Rhsim09G0131200 Rhododendron simsii
Sabra05G0155200 Salix brachista
SalBow8G0641 Salvia bowleyana
Sc25g0001690 Simmondsia chinensis
Sc25g0001710 Simmondsia chinensis
Sed0012106 Sechium edule
Sed0017776 Sechium edule
SEGI_30925 Sequoiadendron giganteum
SGA_v2.0_scaffold7G04085 Striga asiatica
SMO356G0619 Selaginella moellendorffii
Solyc04g009810.3 Solanum lycopersicum
Solyc10g083770.3 Solanum lycopersicum
Sopen04g004940 Solanum pennellii
Sp7g11900 Schrenkiella parvula
Sp7g25620 Schrenkiella parvula
TAR625G1207 Trochodendron aralioides
TAR636G0211 Trochodendron aralioides
TAR636G1363 Trochodendron aralioides
TAR636G1518 Trochodendron aralioides
TAR636G1994 Trochodendron aralioides
TAR636G2277 Trochodendron aralioides
THA.LOC104821795 Tarenaya hassleriana
Thecc.01G141600 Theobroma cacao
Thecc.05G075800 Theobroma cacao
Thecc.05G204800 Theobroma cacao
Thhalv10025473m.g Eutrema salsugineum
TPR.G14646 Trifolium pratense
TPR.G14663 Trifolium pratense
TPR.G27964 Trifolium pratense
TWI14G0774 Tripterygium wilfordii
unitig_748.g8763 Utricularia gibba
vmacro10396 Vaccinium macrocarpon
VMungo0251G3750 Vigna mungo
VMungo0647G0667 Vigna mungo
VMungo0720G2849 Vigna mungo
VMungo1215G3224 Vigna mungo
VMungo1383G1045 Vigna mungo
Zm00001eb067580 Zea mays

User provided reference genes

Program Settings