Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A10p06300 Brassica napus
Aa31sc119G20 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1666 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.1675 Anthoceros agrestis
Actinidia38026 Actinidia chinensis
Ah.02g115920 Amaranthus hybridus
Ah.02g115940 Amaranthus hybridus
AL1G53790 Arabidopsis lyrata
AL1G53840 Arabidopsis lyrata
Aqoxy5G01744 Aquilegia oxysepala
Aqoxy6G00963 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.06HR6X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E8QAF1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I3NIKD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SVX42N Arachis hypogaea
AT1G47550 Arabidopsis thaliana
AT1G47560 Arabidopsis thaliana
ATR0733G144 Amborella trichopoda
Atru.chr13.574 Acer truncatum
AUR62038454 Chenopodium quinoa
AUR62042151 Chenopodium quinoa
BcaB07g33828 Brassica carinata
BcaC08g42958 Brassica carinata
BolC6t35330H Brassica oleracea
BraA10t42896Z Brassica rapa
C06p01990 Brassica napus
CAN.G1002.6 Capsicum annuum
CAN.G389.2 Capsicum annuum
CANSAT21G1752 Cannabis sativa
CANSAT25G1109 Cannabis sativa
CARHR037120 Cardamine hirsuta
CARHR037170 Cardamine hirsuta
CARHR037180 Cardamine hirsuta
CARHR037190 Cardamine hirsuta
Carub.0001s3632 Capsella rubella
Ca_13324_v3 Cicer arietinum L.
Ca_15530_v3 Cicer arietinum L.
CBR_g3845 Chara braunii
CBR_g48206 Chara braunii
Cc10_g03540 Coffea canephora
CDE04G0236 Ceratophyllum demersum
CDE06G1192 Ceratophyllum demersum
CDE07G1354 Ceratophyllum demersum
Cfa002225 Carpinus fangiana
Cfa018458 Carpinus fangiana
Cfa018460 Carpinus fangiana
Cfa026926 Carpinus fangiana
Ciclev10000230m.g Citrus clementina
CiPaw.15G069400 Carya illinoinensis
CiPaw.16G052700 Carya illinoinensis
ClCG05G019260 Citrullus lanatus
COL.COLO4_26390 Corchorus olitorius
Cpa.g.sc64.34 Carica papaya
Cre09.g392000 Chlamydomonas reinhardtii
CsaV3_3G044820 Cucumis sativus L.
CSS0049055 Camellia sinensis var. sinensis
DCAR_019495 Daucus carota
DCAR_019500 Daucus carota
DCAR_020951 Daucus carota
Dinv36027 Davidia involucrata
Dinv39367 Davidia involucrata
Dinv42783 Davidia involucrata
Duzib041G0357 Durio zibethinus
Duzib093G1140 Durio zibethinus
ECA232G2779 Erigeron canadensis
ECA247G0467 Erigeron canadensis
EL10Ac5g11704 Beta vulgaris
Eucgr.A00473 Eucalyptus grandis
FAN15G2607 Fragaria x ananassa
FAN20G2585 Fragaria x ananassa
FAN27G1632 Fragaria x ananassa
FvH4_2g40450 Fragaria vesca
Glyma.04G034700 Glycine max
Glyma.09G114500 Glycine max
Glyma.09G114700 Glycine max
Glyma.14G078400 Glycine max
Glyma.14G078700 Glycine max
Glyma.17G246600 Glycine max
Gohir.A05G197600 Gossypium hirsutum
Gohir.A05G260500 Gossypium hirsutum
Gohir.A11G224300 Gossypium hirsutum
Gohir.A11G227433 Gossypium hirsutum
Gohir.D05G200600 Gossypium hirsutum
Gohir.D05G262600 Gossypium hirsutum
Gohir.D11G228600 Gossypium hirsutum
Gorai.007G245700 Gossypium raimondii
Gorai.009G205900 Gossypium raimondii
Gorai.009G274500 Gossypium raimondii
GSVIVG01009623001 Vitis vinifera
HanXRQChr02g0045841 Helianthus annuus
HanXRQChr09g0268391 Helianthus annuus
HanXRQChr16g0507961 Helianthus annuus
Haze_17610 Corylus avellana
Haze_25402 Corylus avellana
Hma1.2p1_0260F.1_g104360 Hydrangea macrophylla
HPP92_006943 Vanilla planifolia
HPP92_006946 Vanilla planifolia
HPP92_017781 Vanilla planifolia
Lalb_Chr08g0245771 Lupinus albus
Lalb_Chr14g0368971 Lupinus albus
Lalb_Chr22g0355331 Lupinus albus
Lalb_Chr22g0355341 Lupinus albus
Lalb_Chr24g0399101 Lupinus albus
Lj1g0027709 Lotus japonicus
Lj4C47G8 Lonicera japonica
Lj4C782G7 Lonicera japonica
Lj5g0027441 Lotus japonicus
Lsat_1_v5_gn_1_19460 Lactuca sativa
Lsat_1_v5_gn_4_122960 Lactuca sativa
Lsat_1_v5_gn_4_122980 Lactuca sativa
Lsat_1_v5_gn_6_72960 Lactuca sativa
Lsat_1_v5_gn_7_51480 Lactuca sativa
Lsat_1_v5_gn_9_51101 Lactuca sativa
Manes.18G031300 Manihot esculenta
Mapoly0013s0072 Marchantia polymorpha
MBI04_g37463_MAGBIO Magnolia biondii
MBI09_g40771_MAGBIO Magnolia biondii
MBI14_g21903_MAGBIO Magnolia biondii
MBI16_g36197_MAGBIO Magnolia biondii
MBI19_g06118_MAGBIO Magnolia biondii
MD00G1038900 Malus domestica
MD08G1038000 Malus domestica
Medtr1g021680 Medicago truncatula
Medtr3g082900 Medicago truncatula
Medtr3g111590 Medicago truncatula
MELO3C003892.2 Cucumis melo
Migut.C00667 Erythranthe guttata
Migut.E01196 Erythranthe guttata
Migut.N02678 Erythranthe guttata
MSTRG.1310 Avicennia marina
MSTRG.22284 Avicennia marina
MSTRG.24311 Avicennia marina
Nitab4.5_0000453g0100 Nicotiana tabacum
Nitab4.5_0000790g0060 Nicotiana tabacum
Nitab4.5_0002940g0040 Nicotiana tabacum
Nitab4.5_0002940g0050 Nicotiana tabacum
Nitab4.5_0008571g0020 Nicotiana tabacum
Nn5g29441 Nelumbo nucifera
Nn6g32173 Nelumbo nucifera
Nn6g32174 Nelumbo nucifera
Nn6g32175 Nelumbo nucifera
Oeu009593.2 Olea europaea
Oeu015606.1 Olea europaea
Os03g0625700 Oryza sativa ssp. japonica
Os11g0276000 Oryza sativa ssp. japonica
Peaxi162Scf00064g00323 Petunia axillaris
Peaxi162Scf00064g00324 Petunia axillaris
Peaxi162Scf01340g00219 Petunia axillaris
PGR031G3129 Punica granatum
PGR083G1829 Punica granatum
PGSC0003DMG402015451 Solanum tuberosum
Phvul.001G017700 Phaseolus vulgaris
Phvul.007G175100 Phaseolus vulgaris
Phvul.009G055500 Phaseolus vulgaris
Potri.002G131400 Populus trichocarpa
Potri.014G039100 Populus trichocarpa
Pp3c11_16180 Physcomitrium patens
Pp3c11_16980 Physcomitrium patens
Pp3c11_22450 Physcomitrium patens
Pp3c1_15530 Physcomitrium patens
Prupe.1G385700 Prunus persica
Psat0s2723g0120 Pisum sativum
Psat0s2724g0040 Pisum sativum
Psat0s3702g0080 Pisum sativum
Psat5g144280 Pisum sativum
Psat6g010640 Pisum sativum
PSO170G0663 Papaver somniferum
PSO541G3592 Papaver somniferum
PSO675G2900 Papaver somniferum
PSO700G0395 Papaver somniferum
QL02p007130 Quercus lobata
RcHm_v2.0_Chr6g0261041 Rosa chinensis
RcHm_v2.0_Chr6g0300281 Rosa chinensis
Rhsim12G0123700 Rhododendron simsii
Sabra02G0103300 Salix brachista
SalBow7G0889 Salvia bowleyana
SalBow8G4186 Salvia bowleyana
Sc07g0007470 Simmondsia chinensis
Sed0016520 Sechium edule
Sed0021383 Sechium edule
SEGI_02474 Sequoiadendron giganteum
SEGI_11826 Sequoiadendron giganteum
SEGI_15002 Sequoiadendron giganteum
SEGI_30062 Sequoiadendron giganteum
SEGI_35902 Sequoiadendron giganteum
SGA_v2.0_scaffold14G07047 Striga asiatica
SGA_v2.0_scaffold24G10278 Striga asiatica
SHI08192 Sapria himalayana
SHI08193 Sapria himalayana
SHI08196 Sapria himalayana
SMO117G0063 Selaginella moellendorffii
Solyc07g025170.3 Solanum lycopersicum
Solyc12g088990.2 Solanum lycopersicum
Sopen07g012830 Solanum pennellii
Sopen10g025670 Solanum pennellii
Sopen10g026900 Solanum pennellii
Sopen12g030890 Solanum pennellii
Sp1g34560 Schrenkiella parvula
TAR381G0473 Trochodendron aralioides
TAR625G0620 Trochodendron aralioides
THA.LOC104803395 Tarenaya hassleriana
Thecc.08G020200 Theobroma cacao
Thhalv10011225m.g Eutrema salsugineum
TPR.G15746 Trifolium pratense
TPR.G27771 Trifolium pratense
TWI12G1412 Tripterygium wilfordii
TWI36G0061 Tripterygium wilfordii
unitig_26.g9826 Utricularia gibba
unitig_899.g15621 Utricularia gibba
vmacro04486 Vaccinium macrocarpon
VMungo0540G2521 Vigna mungo
VMungo0647G1221 Vigna mungo
VMungo0647G1300 Vigna mungo
VMungo1061G0001 Vigna mungo
VMungo1309G1228 Vigna mungo
VMungo1309G1264 Vigna mungo
VMungo1309G2059 Vigna mungo
Zm00001eb051220 Zea mays
Zm00001eb168780 Zea mays
Zm00001eb168790 Zea mays

User provided reference genes

Program Settings