Gene: AT1G47550
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G47550
- Transcript Identifier AT1G47550.2
- Gene Type Coding gene
- Location Chr1 : 17457171-17463896 : positive
Gene Family Information
- ID HOM05D003114
- #Genes/#Species 220/97
- Phylogenetic origin
- ID ORTHO05D003519
- #Genes/#Species 219/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT1G47550.2
- symbol SEC3A
- uniprot Q9SX85
Descriptions
- Description exocyst complex component sec3A
- Computational description exocyst complex component sec3A (SEC3A); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Exocyst complex, component Exoc1 (InterPro:IPR019160); BEST Arabidopsis thaliana protein match is: exocyst complex component sec3B (TAIR:AT1G47560.1); Has 427 Blast hits to 415 proteins in 159 species: Archae - 5; Bacteria - 8; Metazoa - 155; Fungi - 110; Plants - 105; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
- Computational description exocyst complex component sec3A (SEC3A); INVOLVED IN: biological_process unknown; LOCATED IN: exocyst; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Exocyst complex, component Exoc1 (InterPro:IPR019160); BEST Arabidopsis thaliana protein match is: exocyst complex component sec3B (TAIR:AT1G47560.1).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006887 | IEA | GOA Database | exocytosis | |
| GO:0006887 | IBA | Gene Ontology | exocytosis | 1 |
| GO:0006887 | IEA | InterPro | exocytosis | |
| GO:0006893 | IBA | Gene Ontology | Golgi to plasma membrane transport | 1 |
| GO:0048868 | IMP | Gene Ontology | pollen tube development | 2 |
| GO:0060321 | IMP | Gene Ontology | acceptance of pollen | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005546 | IBA | Gene Ontology | phosphatidylinositol-4,5-bisphosphate binding | 1 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000145 | IEA | GOA Database | exocyst | |
| GO:0000145 | IDA IBA | Gene Ontology | exocyst | 1 5 |
| GO:0000145 | IEA | InterPro | exocyst | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0005856 | IEA | GOA Database | cytoskeleton | |
| GO:0009524 | IEA | GOA Database | phragmoplast | |
| GO:0005886 | IEA | GOA Database | plasma membrane | |
| GO:0005886 | HDA IBA | Gene Ontology | plasma membrane | 1 6 |
| GO:0005576 | IEA | GOA Database | extracellular region | |
| GO:0005829 | IEA | GOA Database | cytosol | |
| GO:0005829 | IDA RCA | Gene Ontology | cytosol | 7 8 |
| GO:0005634 | HDA | Gene Ontology | nucleus | 9 |
| GO:0090404 | IDA | Gene Ontology | pollen tube tip | 2 |
| GO:0070062 | IDA | Gene Ontology | extracellular exosome | 8 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 22.5.1.2 | Vesicle trafficking.exocytic trafficking.Exocyst complex.component SEC3 |