Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p35480 Brassica napus
A06p41180 Brassica napus
Aa31LG2G5190 Aethionema arabicum
Aa31LG9G1050 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2883 Anthoceros agrestis
Actinidia01365 Actinidia chinensis
Actinidia37452 Actinidia chinensis
Ah.02g130310 Amaranthus hybridus
Ah.03g133470 Amaranthus hybridus
AL2G24690 Arabidopsis lyrata
AL2G24720 Arabidopsis lyrata
AL398U10010 Arabidopsis lyrata
AL5G16840 Arabidopsis lyrata
AL7G49220 Arabidopsis lyrata
Aqoxy4G02692 Aquilegia oxysepala
Aqoxy5G03672 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.E04WLM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J8ADIH Arachis hypogaea
AT3G27430 Arabidopsis thaliana
AT5G40580 Arabidopsis thaliana
ATR1149G082 Amborella trichopoda
Atru.chr6.2446 Acer truncatum
AUR62005515 Chenopodium quinoa
AUR62024227 Chenopodium quinoa
BcaB07g30157 Brassica carinata
BcaB07g30159 Brassica carinata
BcaC03g17464 Brassica carinata
BcaC06g30990 Brassica carinata
BcaC06g33819 Brassica carinata
BolC2t11483H Brassica oleracea
BolC7t44168H Brassica oleracea
BraA02t08549Z Brassica rapa
BraA06t27041Z Brassica rapa
C02p54200 Brassica napus
C07p36490 Brassica napus
CAN.G258.1 Capsicum annuum
CAN.G43.20 Capsicum annuum
CANSAT64G1547 Cannabis sativa
CANSAT64G1844 Cannabis sativa
CARHR148800 Cardamine hirsuta
CARHR261400 Cardamine hirsuta
Carub.0005s0583 Capsella rubella
Carub.0007s3492 Capsella rubella
Ca_06611_v3 Cicer arietinum L.
Ca_14813_v3 Cicer arietinum L.
Ca_30728_v3 Cicer arietinum L.
CBR_g50853 Chara braunii
Cc10_g09040 Coffea canephora
Cc11_g16060 Coffea canephora
CDE01G0394 Ceratophyllum demersum
Cfa007326 Carpinus fangiana
Cfa009247 Carpinus fangiana
Ciclev10016241m.g Citrus clementina
Ciclev10032380m.g Citrus clementina
CiPaw.03G046900 Carya illinoinensis
CiPaw.04G030400 Carya illinoinensis
CiPaw.05G178600 Carya illinoinensis
CiPaw.05G178700 Carya illinoinensis
CiPaw.16G075500 Carya illinoinensis
CiPaw.16G112000 Carya illinoinensis
CiPaw.16G112200 Carya illinoinensis
ClCG09G009570 Citrullus lanatus
ClCG11G000300 Citrullus lanatus
COL.COLO4_14930 Corchorus olitorius
COL.COLO4_21246 Corchorus olitorius
COL.COLO4_23501 Corchorus olitorius
COL.COLO4_29191 Corchorus olitorius
COL.COLO4_32882 Corchorus olitorius
COL.COLO4_32920 Corchorus olitorius
COL.COLO4_33632 Corchorus olitorius
COL.COLO4_33782 Corchorus olitorius
COL.COLO4_35824 Corchorus olitorius
Cpa.g.sc130.66 Carica papaya
Cre10.g424400 Chlamydomonas reinhardtii
CsaV3_5G037190 Cucumis sativus L.
CsaV3_7G025230 Cucumis sativus L.
CSS0011443 Camellia sinensis var. sinensis
CSS0014182 Camellia sinensis var. sinensis
CSS0035209 Camellia sinensis var. sinensis
CSS0035746 Camellia sinensis var. sinensis
CSS0043848 Camellia sinensis var. sinensis
CSS0046689 Camellia sinensis var. sinensis
DCAR_024420 Daucus carota
DCAR_026496 Daucus carota
Dinv14746 Davidia involucrata
Duzib147G0622 Durio zibethinus
Duzib187G1719 Durio zibethinus
ECA246G0399 Erigeron canadensis
EL10As2g23169 Beta vulgaris
Eucgr.I01719 Eucalyptus grandis
Eucgr.J02263 Eucalyptus grandis
FAN02G0316 Fragaria x ananassa
FAN05G2431 Fragaria x ananassa
FAN09G4347 Fragaria x ananassa
FAN14G5888 Fragaria x ananassa
FvH4_6g52030 Fragaria vesca
Glyma.02G299000 Glycine max
Glyma.14G014800 Glycine max
Gohir.A05G354000 Gossypium hirsutum
Gohir.A07G224600 Gossypium hirsutum
Gohir.D04G059100 Gossypium hirsutum
Gohir.D07G231900 Gossypium hirsutum
Gorai.001G267100 Gossypium raimondii
Gorai.012G065800 Gossypium raimondii
GSVIVG01000574001 Vitis vinifera
HanXRQChr06g0173911 Helianthus annuus
HanXRQChr09g0274861 Helianthus annuus
HanXRQChr11g0329151 Helianthus annuus
HanXRQChr17g0539861 Helianthus annuus
Haze_14771 Corylus avellana
Haze_26866 Corylus avellana
HPP92_018226 Vanilla planifolia
Hund25405 Selenicereus undatus
Hund25406 Selenicereus undatus
Hund30349 Selenicereus undatus
Hund30350 Selenicereus undatus
Lalb_Chr04g0257711 Lupinus albus
Lalb_Chr10g0091491 Lupinus albus
Lj1C1124G2 Lonicera japonica
Lj2g0004124 Lotus japonicus
Lj3C1061T14 Lonicera japonica
Lj5g0018753 Lotus japonicus
Lj6A815G36 Lonicera japonica
Lsat_1_v5_gn_3_30120 Lactuca sativa
Lsat_1_v5_gn_8_32720 Lactuca sativa
Manes.15G152900 Manihot esculenta
Manes.17G110000 Manihot esculenta
Mapoly0005s0254 Marchantia polymorpha
MBI03_g26652_MAGBIO Magnolia biondii
MBI05_g26894_MAGBIO Magnolia biondii
MBI05_g40682_MAGBIO Magnolia biondii
MBI06_g00929_MAGBIO Magnolia biondii
MBI06_g33527_MAGBIO Magnolia biondii
MBI11_g09150_MAGBIO Magnolia biondii
MBI11_g38368_MAGBIO Magnolia biondii
MBI14_g03619_MAGBIO Magnolia biondii
MBI17_g09699_MAGBIO Magnolia biondii
MCO13G210 Micromonas commoda
MD09G1020800 Malus domestica
MD17G1021000 Malus domestica
Medtr7g032930 Medicago truncatula
Medtr7g037830 Medicago truncatula
MELO3C027069.2 Cucumis melo
Migut.K00628 Erythranthe guttata
MSTRG.551 Avicennia marina
MSTRG.7950 Avicennia marina
Nitab4.5_0000067g0240 Nicotiana tabacum
Nitab4.5_0001839g0020 Nicotiana tabacum
Nitab4.5_0009909g0010 Nicotiana tabacum
Nn3g16653 Nelumbo nucifera
Nn4g22543 Nelumbo nucifera
Oeu031874.1 Olea europaea
Oeu038648.2 Olea europaea
Oeu059779.1 Olea europaea
Os05g0187000 Oryza sativa ssp. japonica
Peaxi162Scf00128g00530 Petunia axillaris
Peaxi162Scf00128g00538 Petunia axillaris
PGR042G2012 Punica granatum
PGR044G1483 Punica granatum
PGR142G0956 Punica granatum
PGSC0003DMG400013210 Solanum tuberosum
PGSC0003DMG400016969 Solanum tuberosum
Phvul.001G030300 Phaseolus vulgaris
Phvul.008G277700 Phaseolus vulgaris
Phvul.011G213400 Phaseolus vulgaris
Potri.004G066000 Populus trichocarpa
Potri.017G071100 Populus trichocarpa
Pp3c16_16070 Physcomitrium patens
Pp3c27_6380 Physcomitrium patens
Pp3c6_26530 Physcomitrium patens
PRCOL_00000410 Prasinoderma coloniale
Prupe.3G295500 Prunus persica
Psat3g160960 Pisum sativum
Psat3g171680 Pisum sativum
PSO063G6490 Papaver somniferum
PSO754G0006 Papaver somniferum
PSO832G1560 Papaver somniferum
QL02p073801 Quercus lobata
QL03p056428 Quercus lobata
QL03p056432 Quercus lobata
QL03p056479 Quercus lobata
RcHm_v2.0_Chr2g0173491 Rosa chinensis
RcHm_v2.0_Chr2g0173541 Rosa chinensis
RcHm_v2.0_Chr3g0468681 Rosa chinensis
Rhsim07G0210900 Rhododendron simsii
Sabra04G0044100 Salix brachista
Sabra17G0063600 Salix brachista
SalBow2G2722 Salvia bowleyana
Sc14g0008790 Simmondsia chinensis
Sed0007881 Sechium edule
Sed0012147 Sechium edule
SEGI_05808 Sequoiadendron giganteum
SEGI_15110 Sequoiadendron giganteum
SEGI_23036 Sequoiadendron giganteum
SEGI_27566 Sequoiadendron giganteum
SGA_v2.0_scaffold100G29582 Striga asiatica
SMO145G0014 Selaginella moellendorffii
Solyc04g024420.3 Solanum lycopersicum
Solyc05g013820.4 Solanum lycopersicum
Sopen04g010180 Solanum pennellii
Sopen05g008730 Solanum pennellii
Sp2g16630 Schrenkiella parvula
Sp7g01280 Schrenkiella parvula
TAR629G3311 Trochodendron aralioides
THA.LOC104805358 Tarenaya hassleriana
THA.LOC104823956 Tarenaya hassleriana
THA.LOC104825313 Tarenaya hassleriana
Thecc.02G265500 Theobroma cacao
Thecc.04G021600 Theobroma cacao
Thhalv10004761m.g Eutrema salsugineum
Thhalv10027794m.g Eutrema salsugineum
TPR.G1129 Trifolium pratense
TWI18G0811 Tripterygium wilfordii
TWI75G1303 Tripterygium wilfordii
unitig_26.g10375 Utricularia gibba
vmacro04664 Vaccinium macrocarpon
vmacro16167 Vaccinium macrocarpon
VMungo0647G1138 Vigna mungo
Zm00001eb268750 Zea mays
Zm00001eb304090 Zea mays

User provided reference genes

Program Settings