Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p33070 Brassica napus
A07p05480 Brassica napus
Aa31LG8G12930 Aethionema arabicum
Aa31LG8G16030 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3517 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.433 Anthoceros agrestis
Actinidia00395 Actinidia chinensis
Actinidia01299 Actinidia chinensis
Actinidia34380 Actinidia chinensis
Actinidia37309 Actinidia chinensis
Ah.09g230000 Amaranthus hybridus
AL2G11780 Arabidopsis lyrata
AL3G52990 Arabidopsis lyrata
AL6G12130 Arabidopsis lyrata
Aqoxy6G02787 Aquilegia oxysepala
Aqoxy7G02351 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.45X8ED Arachis hypogaea
AT2G18940 Arabidopsis thaliana
AT5G02860 Arabidopsis thaliana
ATR0618G146 Amborella trichopoda
ATR0618G281 Amborella trichopoda
ATR0661G573 Amborella trichopoda
Atru.chr5.2421 Acer truncatum
Atru.chr7.865 Acer truncatum
AUR62021315 Chenopodium quinoa
AUR62033232 Chenopodium quinoa
BcaB03g16232 Brassica carinata
BcaC06g36026 Brassica carinata
BcaNung06913 Brassica carinata
BolC3t18203H Brassica oleracea
BolC7t41294H Brassica oleracea
BraA06t26237Z Brassica rapa
BraA07t28341Z Brassica rapa
C03p59390 Brassica napus
C07p08810 Brassica napus
CAN.G206.197 Capsicum annuum
CAN.G606.38 Capsicum annuum
CANSAT11G0661 Cannabis sativa
CANSAT25G1867 Cannabis sativa
CARHR109480 Cardamine hirsuta
CARHR210470 Cardamine hirsuta
Carub.0003s3317 Capsella rubella
Carub.0006s0166 Capsella rubella
Ca_02033_v3 Cicer arietinum L.
Ca_24349_v3 Cicer arietinum L.
CBR_g23539 Chara braunii
Cc02_g19560 Coffea canephora
Cc06_g13040 Coffea canephora
CDE04G2598 Ceratophyllum demersum
CDE04G3342 Ceratophyllum demersum
CDE06G2586 Ceratophyllum demersum
CDE07G1469 Ceratophyllum demersum
Cfa004621 Carpinus fangiana
Cfa013401 Carpinus fangiana
Ciclev10007460m.g Citrus clementina
Ciclev10030402m.g Citrus clementina
CiPaw.05G014700 Carya illinoinensis
CiPaw.08G035000 Carya illinoinensis
ClCG02G006650 Citrullus lanatus
ClCG11G012050 Citrullus lanatus
COL.COLO4_29977 Corchorus olitorius
COL.COLO4_32549 Corchorus olitorius
Cpa.g.sc95.42 Carica papaya
CsaV3_2G008490 Cucumis sativus L.
CsaV3_7G007980 Cucumis sativus L.
CSS0042594 Camellia sinensis var. sinensis
CSS0049173 Camellia sinensis var. sinensis
DCAR_020128 Daucus carota
DCAR_029110 Daucus carota
Dinv15783 Davidia involucrata
Dinv19555 Davidia involucrata
Duzib132G1008 Durio zibethinus
Duzib150G0731 Durio zibethinus
Duzib150G1593 Durio zibethinus
ECA234G1555 Erigeron canadensis
ECA240G0024 Erigeron canadensis
EL10Ac8g18299 Beta vulgaris
Eucgr.C02384 Eucalyptus grandis
Eucgr.I01083 Eucalyptus grandis
FAN07G1351 Fragaria x ananassa
FAN12G3026 Fragaria x ananassa
FAN15G3015 Fragaria x ananassa
FAN17G0903 Fragaria x ananassa
FAN20G2458 Fragaria x ananassa
FAN24G1521 Fragaria x ananassa
FAN27G0367 Fragaria x ananassa
FvH4_2g04590 Fragaria vesca
FvH4_4g07880 Fragaria vesca
Glyma.09G056200 Glycine max
Glyma.11G001100 Glycine max
Glyma.15G162500 Glycine max
Glyma.20G131400 Glycine max
Gohir.A03G184400 Gossypium hirsutum
Gohir.A05G004100 Gossypium hirsutum
Gohir.D02G205900 Gossypium hirsutum
Gohir.D05G004500 Gossypium hirsutum
Gorai.005G233300 Gossypium raimondii
Gorai.009G004300 Gossypium raimondii
GSVIVG01029248001 Vitis vinifera
GSVIVG01037880001 Vitis vinifera
HanXRQChr07g0202171 Helianthus annuus
HanXRQChr10g0309411 Helianthus annuus
HanXRQChr11g0344631 Helianthus annuus
Haze_21943 Corylus avellana
Hma1.2p1_0157F.1_g069410 Hydrangea macrophylla
Hma1.2p1_1174F.1_g263900 Hydrangea macrophylla
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla
Hma1.2p1_3153F.1_g333300 Hydrangea macrophylla
HPP92_004784 Vanilla planifolia
HPP92_004785 Vanilla planifolia
HPP92_020448 Vanilla planifolia
Lalb_Chr15g0084001 Lupinus albus
Lalb_Chr16g0376261 Lupinus albus
Lalb_Chr21g0308181 Lupinus albus
Lj1g0002494 Lotus japonicus
Lj5g0019062 Lotus japonicus
Lj5P217T31 Lonicera japonica
Lj6g0004675 Lotus japonicus
Lju50C4T14 Lonicera japonica
Lsat_1_v5_gn_5_80001 Lactuca sativa
Lsat_1_v5_gn_7_53500 Lactuca sativa
Manes.06G022500 Manihot esculenta
Manes.10G074400 Manihot esculenta
Manes.14G156601 Manihot esculenta
Mapoly0063s0054 Marchantia polymorpha
MD05G1251200 Malus domestica
MD10G1101600 Malus domestica
MD10G1101700 Malus domestica
MD13G1249100 Malus domestica
MD13G1249200 Malus domestica
MD16G1255600 Malus domestica
Medtr2g036560 Medicago truncatula
Medtr3g053350 Medicago truncatula
Medtr5g096480 Medicago truncatula
MELO3C004009.2 Cucumis melo
MELO3C018506.2 Cucumis melo
Migut.B00415 Erythranthe guttata
Migut.J01501 Erythranthe guttata
MSTRG.16696 Avicennia marina
Nitab4.5_0000055g0170 Nicotiana tabacum
Nitab4.5_0006139g0010 Nicotiana tabacum
Nn5g30488 Nelumbo nucifera
Nn8g40410 Nelumbo nucifera
Oeu003873.1 Olea europaea
Oeu009681.2 Olea europaea
Oeu025692.1 Olea europaea
Oeu032538.1 Olea europaea
Os05g0275000 Oryza sativa ssp. japonica
Os07g0590600 Oryza sativa ssp. japonica
Peaxi162Scf00016g02611 Petunia axillaris
Peaxi162Scf01124g10012 Petunia axillaris
PGR044G1733 Punica granatum
PGR142G1622 Punica granatum
PGSC0003DMG400004093 Solanum tuberosum
PGSC0003DMG400025851 Solanum tuberosum
Phvul.002G053300 Phaseolus vulgaris
Phvul.007G042700 Phaseolus vulgaris
Phvul.009G239200 Phaseolus vulgaris
Potri.001G297300 Populus trichocarpa
Potri.006G166200 Populus trichocarpa
Potri.009G092100 Populus trichocarpa
Pp3c19_5823 Physcomitrium patens
Pp3c22_3230 Physcomitrium patens
Pp3c6_26920 Physcomitrium patens
Prupe.3G037500 Prunus persica
Prupe.8G139200 Prunus persica
Psat1g146880 Pisum sativum
Psat4g228080 Pisum sativum
PSO017G1313 Papaver somniferum
PSO063G7185 Papaver somniferum
PSO541G6324 Papaver somniferum
PSO675G3831 Papaver somniferum
QL02p098354 Quercus lobata
QL11p032336 Quercus lobata
RcHm_v2.0_Chr4g0401161 Rosa chinensis
RcHm_v2.0_Chr6g0254201 Rosa chinensis
Rhsim12G0158500 Rhododendron simsii
Rhsim12G0158600 Rhododendron simsii
Sabra06G0127800 Salix brachista
Sabra16G0186300 Salix brachista
SalBow2G2076 Salvia bowleyana
SalBow6G6861 Salvia bowleyana
Sc05g0000680 Simmondsia chinensis
Sc18g0003680 Simmondsia chinensis
Sed0000805 Sechium edule
Sed0009936 Sechium edule
SEGI_12509 Sequoiadendron giganteum
SEGI_25408 Sequoiadendron giganteum
SEGI_36968 Sequoiadendron giganteum
SGA_v2.0_scaffold32G13017 Striga asiatica
SGA_v2.0_scaffold66G22432 Striga asiatica
SMO118G0456 Selaginella moellendorffii
Solyc01g107320.3 Solanum lycopersicum
Solyc07g017760.1 Solanum lycopersicum
Sopen01g049560 Solanum pennellii
Sopen07g006580 Solanum pennellii
Sp3g28230 Schrenkiella parvula
SpUn0483_0010 Schrenkiella parvula
TAR374G0913 Trochodendron aralioides
TAR381G1447 Trochodendron aralioides
TAR628G0528 Trochodendron aralioides
TAR633G0910 Trochodendron aralioides
THA.LOC104804489 Tarenaya hassleriana
THA.LOC104807228 Tarenaya hassleriana
THA.LOC104819538 Tarenaya hassleriana
Thecc.02G112900 Theobroma cacao
Thecc.09G174700 Theobroma cacao
Thhalv10022551m.g Eutrema salsugineum
Thhalv10022557m.g Eutrema salsugineum
TPR.G20572 Trifolium pratense
TPR.G8314 Trifolium pratense
TWI14G1022 Tripterygium wilfordii
TWI63G0611 Tripterygium wilfordii
vmacro16033 Vaccinium macrocarpon
VMungo0464G0716 Vigna mungo
VMungo0720G1781 Vigna mungo
VMungo0720G1987 Vigna mungo
VMungo1215G2431 Vigna mungo
Zm00001eb059400 Zea mays
Zm00001eb183730 Zea mays
Zm00001eb274840 Zea mays
Zm00001eb308500 Zea mays
Zm00001eb326320 Zea mays
Zm00001eb412070 Zea mays
Zm00001eb416300 Zea mays

User provided reference genes

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