Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p23480 Brassica napus
A04p31930 Brassica napus
A05p02640 Brassica napus
A07p23860 Brassica napus
A09p50880 Brassica napus
Aa31LG10G12790 Aethionema arabicum
Aa31LG1G24200 Aethionema arabicum
Aa31sc291G10 Aethionema arabicum
Actinidia17286 Actinidia chinensis
Actinidia22060 Actinidia chinensis
Actinidia26578 Actinidia chinensis
Actinidia32415 Actinidia chinensis
Actinidia38595 Actinidia chinensis
AL4G40290 Arabidopsis lyrata
AL5G39740 Arabidopsis lyrata
AL6G16740 Arabidopsis lyrata
Aqoxy2G00075 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5ZNX8B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FC6ISK Arachis hypogaea
AT2G41940 Arabidopsis thaliana
AT3G58070 Arabidopsis thaliana
AT5G06650 Arabidopsis thaliana
ATR0598G083 Amborella trichopoda
Atru.chr8.1166 Acer truncatum
BcaB01g03427 Brassica carinata
BcaB05g21657 Brassica carinata
BcaB06g29219 Brassica carinata
BcaC01g05318 Brassica carinata
BcaC02g07271 Brassica carinata
BcaC02g12448 Brassica carinata
BcaC07g40180 Brassica carinata
BcaC07g40327 Brassica carinata
BcaC08g44893 Brassica carinata
BolC2t06244H Brassica oleracea
BolC3t15171H Brassica oleracea
BolC4t21955H Brassica oleracea
BolC4t28442H Brassica oleracea
BolC6t37667H Brassica oleracea
BolC8t50959H Brassica oleracea
BraA02t04887Z Brassica rapa
BraA03t11564Z Brassica rapa
BraA04t18651Z Brassica rapa
BraA05t19257Z Brassica rapa
BraA07t30039Z Brassica rapa
BraA09t40534Z Brassica rapa
C02p02790 Brassica napus
C03p28010 Brassica napus
C04p03150 Brassica napus
C04p69400 Brassica napus
C06p25080 Brassica napus
C08p33620 Brassica napus
CAN.G128.54 Capsicum annuum
CAN.G960.17 Capsicum annuum
CANSAT35G0954 Cannabis sativa
CANSAT64G0351 Cannabis sativa
CARHR137040 Cardamine hirsuta
CARHR168390 Cardamine hirsuta
CARHR206560 Cardamine hirsuta
Carub.0004s2426 Capsella rubella
Carub.0005s2491 Capsella rubella
Carub.0006s0553 Capsella rubella
Ca_12018_v3 Cicer arietinum L.
Cc06_g15570 Coffea canephora
CDE05G0332 Ceratophyllum demersum
CDE07G0963 Ceratophyllum demersum
Cfa020137 Carpinus fangiana
Ciclev10012347m.g Citrus clementina
CiPaw.09G027700 Carya illinoinensis
CiPaw.10G024800 Carya illinoinensis
ClCG10G017710 Citrullus lanatus
COL.COLO4_29372 Corchorus olitorius
Cpa.g.sc1307.1 Carica papaya
CsaV3_3G038590 Cucumis sativus L.
CSS0018051 Camellia sinensis var. sinensis
CSS0020370 Camellia sinensis var. sinensis
DCAR_013669 Daucus carota
DCAR_017039 Daucus carota
DCAR_019860 Daucus carota
Dinv16350 Davidia involucrata
Dinv24050 Davidia involucrata
Duzib093G1804 Durio zibethinus
Duzib106G1122 Durio zibethinus
Duzib128G0643 Durio zibethinus
ECA233G2104 Erigeron canadensis
EL10Ac3g06872 Beta vulgaris
Eucgr.A02474 Eucalyptus grandis
FAN02G2031 Fragaria x ananassa
FAN05G0236 Fragaria x ananassa
FAN09G1562 Fragaria x ananassa
FAN14G4307 Fragaria x ananassa
FvH4_6g21760 Fragaria vesca
Glyma.02G170366 Glycine max
Glyma.03G147200 Glycine max
Glyma.09G107400 Glycine max
Glyma.19G150800 Glycine max
Gohir.A01G137500 Gossypium hirsutum
Gohir.A04G053200 Gossypium hirsutum
Gohir.A05G315400 Gossypium hirsutum
Gohir.D01G124300 Gossypium hirsutum
Gohir.D04G090600 Gossypium hirsutum
Gohir.D05G316150 Gossypium hirsutum
Gorai.002G155100 Gossypium raimondii
Gorai.009G339000 Gossypium raimondii
Gorai.009G391500 Gossypium raimondii
HanXRQChr01g0025001 Helianthus annuus
HanXRQChr02g0053961 Helianthus annuus
HanXRQChr13g0398371 Helianthus annuus
Haze_20032 Corylus avellana
Hma1.2p1_0116F.1_g056140 Hydrangea macrophylla
Hma1.2p1_0124F.1_g058280 Hydrangea macrophylla
HPP92_009324 Vanilla planifolia
HPP92_009649 Vanilla planifolia
HPP92_024785 Vanilla planifolia
Lalb_Chr21g0316091 Lupinus albus
Lj5g0003385 Lotus japonicus
Lju124C22T4 Lonicera japonica
Lsat_1_v5_gn_1_59901 Lactuca sativa
Lsat_1_v5_gn_2_56801 Lactuca sativa
Lsat_1_v5_gn_3_9241 Lactuca sativa
Lsat_1_v5_gn_6_36341 Lactuca sativa
Manes.08G041900 Manihot esculenta
Manes.09G038600 Manihot esculenta
MBI13_g29637_MAGBIO Magnolia biondii
MBI19_g17431_MAGBIO Magnolia biondii
MD12G1054000 Malus domestica
MD14G1052700 Malus domestica
Medtr1g054450 Medicago truncatula
MELO3C009603.2 Cucumis melo
Migut.J01859 Erythranthe guttata
Migut.K00023 Erythranthe guttata
MSTRG.19922 Avicennia marina
MSTRG.26076 Avicennia marina
Nitab4.5_0000358g0050 Nicotiana tabacum
Nitab4.5_0001079g0060 Nicotiana tabacum
Nitab4.5_0001440g0010 Nicotiana tabacum
Nitab4.5_0007813g0010 Nicotiana tabacum
Nn2g15752 Nelumbo nucifera
Nn7g35949 Nelumbo nucifera
Oeu024497.1 Olea europaea
Oeu046717.1 Olea europaea
Oeu057585.1 Olea europaea
Oeu063860.1 Olea europaea
Os02g0775600 Oryza sativa ssp. japonica
Os03g0216000 Oryza sativa ssp. japonica
Os08g0463500 Oryza sativa ssp. japonica
Os09g0445500 Oryza sativa ssp. japonica
Peaxi162Scf00003g00465 Petunia axillaris
Peaxi162Scf00003g04714 Petunia axillaris
Peaxi162Scf00249g00111 Petunia axillaris
Peaxi162Scf00363g00082 Petunia axillaris
Peaxi162Scf00481g00052 Petunia axillaris
PGR004G2322 Punica granatum
PGSC0003DMG400005486 Solanum tuberosum
PGSC0003DMG400011450 Solanum tuberosum
PGSC0003DMG400023666 Solanum tuberosum
Phvul.001G144900 Phaseolus vulgaris
Phvul.007G261500 Phaseolus vulgaris
Potri.006G195100 Populus trichocarpa
Potri.016G060600 Populus trichocarpa
Prupe.7G082800 Prunus persica
Psat6g118400 Pisum sativum
PSO339G6482 Papaver somniferum
PSO384G4982 Papaver somniferum
QL07p024739 Quercus lobata
RcHm_v2.0_Chr3g0479101 Rosa chinensis
Rhsim03G0003700 Rhododendron simsii
Rhsim04G0094100 Rhododendron simsii
RhsimUnG0147100 Rhododendron simsii
Sabra06G0149800 Salix brachista
Sabra16G0063500 Salix brachista
SalBow1G3700 Salvia bowleyana
SalBow6G5318 Salvia bowleyana
Sc13g0002450 Simmondsia chinensis
Sc19g0006140 Simmondsia chinensis
Sed0017358 Sechium edule
Sed0025702 Sechium edule
SGA_v2.0_scaffold105G30507 Striga asiatica
SGA_v2.0_scaffold274G46500 Striga asiatica
SGA_v2.0_scaffold69G23049 Striga asiatica
SHI30070 Sapria himalayana
Solyc10g078970.1 Solanum lycopersicum
Solyc10g078990.1 Solanum lycopersicum
Solyc10g080600.3 Solanum lycopersicum
Sopen03g011760 Solanum pennellii
Sopen10g029600 Solanum pennellii
Sopen10g029610 Solanum pennellii
Sopen10g031140 Solanum pennellii
Sp4g24200 Schrenkiella parvula
Sp5g04650 Schrenkiella parvula
Sp6g36220 Schrenkiella parvula
TAR369G0861 Trochodendron aralioides
TAR369G1005 Trochodendron aralioides
TAR623G1143 Trochodendron aralioides
TAR633G1856 Trochodendron aralioides
TAR636G3182 Trochodendron aralioides
TAR636G3374 Trochodendron aralioides
THA.LOC104799281 Tarenaya hassleriana
THA.LOC104820459 Tarenaya hassleriana
THA.LOC104824488 Tarenaya hassleriana
THA.LOC104826777 Tarenaya hassleriana
THA.LOC109117279 Tarenaya hassleriana
Thecc.05G176200 Theobroma cacao
Thhalv10006369m.g Eutrema salsugineum
Thhalv10015667m.g Eutrema salsugineum
Thhalv10017746m.g Eutrema salsugineum
TPR.G23120 Trifolium pratense
TWI53G1488 Tripterygium wilfordii
TWI74G1081 Tripterygium wilfordii
TWI77G0305 Tripterygium wilfordii
unitig_22.g6021 Utricularia gibba
unitig_736.g22305 Utricularia gibba
unitig_746.g26801 Utricularia gibba
unitig_8.g3524 Utricularia gibba
unitig_899.g15076 Utricularia gibba
unitig_899.g15169 Utricularia gibba
vmacro22118 Vaccinium macrocarpon
VMungo0720G2825 Vigna mungo
VMungo1383G3641 Vigna mungo
Zm00001eb008740 Zea mays
Zm00001eb100360 Zea mays
Zm00001eb177370 Zea mays
Zm00001eb193240 Zea mays
Zm00001eb256600 Zea mays
Zm00001eb278830 Zea mays
Zm00001eb314340 Zea mays
Zm00001eb373620 Zea mays

User provided reference genes

Program Settings