Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p58390 Brassica napus
A08p19930 Brassica napus
A08p37530 Brassica napus
Aa31LG1G9650 Aethionema arabicum
Aa31LG2G21630 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.146 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.552 Anthoceros agrestis
Actinidia23750 Actinidia chinensis
Actinidia24835 Actinidia chinensis
Ah.08g213220 Amaranthus hybridus
Ah.08g213840 Amaranthus hybridus
AL1G12350 Arabidopsis lyrata
AL7G23760 Arabidopsis lyrata
Aqoxy5G00718 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6AV2XZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PYW4YI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S4J522 Arachis hypogaea
AT1G02910 Arabidopsis thaliana
AT4G28740 Arabidopsis thaliana
ATR0787G112 Amborella trichopoda
ATR0796G057 Amborella trichopoda
Atru.chr5.1184 Acer truncatum
Atru.chr5.1919 Acer truncatum
AUR62008614 Chenopodium quinoa
AUR62008850 Chenopodium quinoa
AUR62025396 Chenopodium quinoa
AUR62033166 Chenopodium quinoa
BcaB03g13497 Brassica carinata
BcaC06g32606 Brassica carinata
BcaC07g36983 Brassica carinata
BcaC07g36984 Brassica carinata
BcaC07g38358 Brassica carinata
BolC7t46120H Brassica oleracea
BolC8t46834H Brassica oleracea
BolC8t48775H Brassica oleracea
BraA03t14901Z Brassica rapa
BraA08t33950Z Brassica rapa
BraA08t35650Z Brassica rapa
C07p56410 Brassica napus
C08p00330 Brassica napus
C08p11060 Brassica napus
CAN.G15.15 Capsicum annuum
CAN.G339.34 Capsicum annuum
CANSAT01G1542 Cannabis sativa
CANSAT25G2142 Cannabis sativa
CARHR002260 Cardamine hirsuta
CARHR236530 Cardamine hirsuta
Carub.0001s0204 Capsella rubella
Carub.0007s1190 Capsella rubella
Carub.0033s0003 Capsella rubella
Ca_09145_v3 Cicer arietinum L.
Ca_09629_v3 Cicer arietinum L.
CBR_g45311 Chara braunii
Cc01_g17510 Coffea canephora
Cc01_g20630 Coffea canephora
CDE07G0700 Ceratophyllum demersum
CDE07G1881 Ceratophyllum demersum
CDE09G0439 Ceratophyllum demersum
CDE12G0759 Ceratophyllum demersum
Cfa005952 Carpinus fangiana
Ciclev10020155m.g Citrus clementina
Ciclev10021056m.g Citrus clementina
CiPaw.04G192000 Carya illinoinensis
CiPaw.07G106200 Carya illinoinensis
ClCG07G001580 Citrullus lanatus
ClCG10G010650 Citrullus lanatus
COL.COLO4_23377 Corchorus olitorius
COL.COLO4_36322 Corchorus olitorius
Cpa.g.sc87.75 Carica papaya
Cpa.g.sc9.206 Carica papaya
Cre06.g266900 Chlamydomonas reinhardtii
Cre10.g430150 Chlamydomonas reinhardtii
CsaV3_3G028580 Cucumis sativus L.
CsaV3_4G000660 Cucumis sativus L.
CSS0019938 Camellia sinensis var. sinensis
CSS0028015 Camellia sinensis var. sinensis
DCAR_000543 Daucus carota
DCAR_004698 Daucus carota
Dinv19250 Davidia involucrata
Dinv33033 Davidia involucrata
Duzib138G0364 Durio zibethinus
Duzib138G1578 Durio zibethinus
ECA247G1318 Erigeron canadensis
EL10Ac7g17439 Beta vulgaris
EL10Ac7g17750 Beta vulgaris
Eucgr.H00829 Eucalyptus grandis
Eucgr.H01162 Eucalyptus grandis
FAN15G0733 Fragaria x ananassa
FAN15G0853 Fragaria x ananassa
FAN15G1802 Fragaria x ananassa
FAN20G1285 Fragaria x ananassa
FAN24G0035 Fragaria x ananassa
FAN24G2514 Fragaria x ananassa
FAN27G1096 Fragaria x ananassa
FAN27G1753 Fragaria x ananassa
FvH4_2g19970 Fragaria vesca
FvH4_2g25340 Fragaria vesca
Glyma.03G212900 Glycine max
Glyma.13G129300 Glycine max
Glyma.19G209800 Glycine max
Gohir.A07G202700 Gossypium hirsutum
Gohir.A11G115400 Gossypium hirsutum
Gohir.D07G208900 Gossypium hirsutum
Gohir.D11G120400 Gossypium hirsutum
Gorai.001G235900 Gossypium raimondii
Gorai.007G129100 Gossypium raimondii
GSVIVG01027972001 Vitis vinifera
GSVIVG01028479001 Vitis vinifera
HanXRQChr15g0465901 Helianthus annuus
HanXRQChr15g0468111 Helianthus annuus
Haze_04894 Corylus avellana
Haze_24735 Corylus avellana
HPP92_016938 Vanilla planifolia
HPP92_016939 Vanilla planifolia
HPP92_022681 Vanilla planifolia
Hund05411 Selenicereus undatus
Hund18340 Selenicereus undatus
Lalb_Chr02g0152911 Lupinus albus
Lalb_Chr18g0047151 Lupinus albus
Lj1g0010545 Lotus japonicus
Lj2A1137T46 Lonicera japonica
Lj2C1190G10 Lonicera japonica
Lj4A57G7 Lonicera japonica
Lj5g0022856 Lotus japonicus
Lsat_1_v5_gn_9_11980 Lactuca sativa
Lsat_1_v5_gn_9_5780 Lactuca sativa
Manes.01G216900 Manihot esculenta
Manes.13G042300 Manihot esculenta
Mapoly0001s0532 Marchantia polymorpha
Mapoly0009s0217 Marchantia polymorpha
MBI07_g08921_MAGBIO Magnolia biondii
MBI18_g21837_MAGBIO Magnolia biondii
MCO02G052 Micromonas commoda
MCO07G782 Micromonas commoda
MCO08G010 Micromonas commoda
MD03G1284800 Malus domestica
MD05G1184000 Malus domestica
MD10G1171900 Malus domestica
MD11G1304300 Malus domestica
Medtr1g069240 Medicago truncatula
Medtr7g108590 Medicago truncatula
MELO3C012814.2 Cucumis melo
MELO3C017970.2 Cucumis melo
Migut.D00194 Erythranthe guttata
Migut.D00497 Erythranthe guttata
MSTRG.21448 Avicennia marina
MSTRG.21621 Avicennia marina
Nitab4.5_0000385g0210 Nicotiana tabacum
Nitab4.5_0000619g0020 Nicotiana tabacum
Nitab4.5_0004333g0030 Nicotiana tabacum
Nitab4.5_0005474g0050 Nicotiana tabacum
Nn3g19850 Nelumbo nucifera
Nn4g25853 Nelumbo nucifera
Oeu011443.1 Olea europaea
Os06g0235500 Oryza sativa ssp. japonica
Peaxi162Scf00043g00068 Petunia axillaris
Peaxi162Scf00067g02524 Petunia axillaris
PGR119G0599 Punica granatum
PGR119G0952 Punica granatum
PGSC0003DMG400022024 Solanum tuberosum
PGSC0003DMG401011368 Solanum tuberosum
Phvul.001G205600 Phaseolus vulgaris
Phvul.008G133800 Phaseolus vulgaris
Potri.002G206300 Populus trichocarpa
Potri.014G194500 Populus trichocarpa
Pp3c12_5470 Physcomitrium patens
Pp3c14_24240 Physcomitrium patens
Pp3c17_23380 Physcomitrium patens
PRCOL_00000260 Prasinoderma coloniale
PRCOL_00003368 Prasinoderma coloniale
PRCOL_00004687 Prasinoderma coloniale
Prupe.8G210100 Prunus persica
Prupe.8G257900 Prunus persica
Psat3g022640 Pisum sativum
Psat6g065200 Pisum sativum
PSO210G3998 Papaver somniferum
PSO210G6313 Papaver somniferum
PSO761G0602 Papaver somniferum
PSO832G0696 Papaver somniferum
QL09p043411 Quercus lobata
QL10p053334 Quercus lobata
QL10p054524 Quercus lobata
QL12p027123 Quercus lobata
RcHm_v2.0_Chr6g0285631 Rosa chinensis
RcHm_v2.0_Chr6g0293521 Rosa chinensis
Rhsim01G0283700 Rhododendron simsii
Rhsim10G0162000 Rhododendron simsii
Sabra02G0153000 Salix brachista
Sabra14G0143000 Salix brachista
SalBow3G3623 Salvia bowleyana
SalBow4G2998 Salvia bowleyana
Sc05g0002520 Simmondsia chinensis
Sc05g0004220 Simmondsia chinensis
Sed0017795 Sechium edule
Sed0021737 Sechium edule
SEGI_15244 Sequoiadendron giganteum
SEGI_25055 Sequoiadendron giganteum
SEGI_31422 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00381 Striga asiatica
SGA_v2.0_scaffold1G00683 Striga asiatica
SGA_v2.0_scaffold31G12688 Striga asiatica
SMO276G0017 Selaginella moellendorffii
SMO339G0016 Selaginella moellendorffii
Solyc09g063140.4 Solanum lycopersicum
Solyc09g074880.4 Solanum lycopersicum
Sopen09g025310 Solanum pennellii
Sopen09g029700 Solanum pennellii
Sp1g01910 Schrenkiella parvula
Sp7g26750 Schrenkiella parvula
TAR362G0272 Trochodendron aralioides
TAR365G0860 Trochodendron aralioides
THA.LOC104801568 Tarenaya hassleriana
THA.LOC104804029 Tarenaya hassleriana
Thecc.01G245500 Theobroma cacao
Thecc.01G296900 Theobroma cacao
Thhalv10009985m.g Eutrema salsugineum
Thhalv10025669m.g Eutrema salsugineum
TPR.G28994 Trifolium pratense
TPR.G9618 Trifolium pratense
TWI59G0362 Tripterygium wilfordii
unitig_22.g5245 Utricularia gibba
unitig_8.g3077 Utricularia gibba
vmacro14778 Vaccinium macrocarpon
VMungo0720G0945 Vigna mungo
VMungo1383G2530 Vigna mungo
Zm00001eb077910 Zea mays
Zm00001eb131600 Zea mays

User provided reference genes

Program Settings