Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p02640 Brassica napus
A09p02650 Brassica napus
A10p03370 Brassica napus
Aa31LG1G19940 Aethionema arabicum
Aa31LG5G2800 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2474 Anthoceros agrestis
Actinidia38950 Actinidia chinensis
Ah.02g130380 Amaranthus hybridus
Ah.03g133560 Amaranthus hybridus
Ah.05g180830 Amaranthus hybridus
AL1G14660 Arabidopsis lyrata
AL6G49600 Arabidopsis lyrata
AL6G49610 Arabidopsis lyrata
Aqoxy5G03963 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3S9J83 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KN6F1W Arachis hypogaea
AT1G04940 Arabidopsis thaliana
AT4G03320 Arabidopsis thaliana
ATR0680G404 Amborella trichopoda
Atru.chr13.412 Acer truncatum
Atru.chr6.3065 Acer truncatum
Atru.chr8.1051 Acer truncatum
AUR62005527 Chenopodium quinoa
AUR62014484 Chenopodium quinoa
AUR62024209 Chenopodium quinoa
AUR62034517 Chenopodium quinoa
BcaB01g01955 Brassica carinata
BcaB01g01956 Brassica carinata
BcaC04g23978 Brassica carinata
BcaC04g23979 Brassica carinata
BolC5t29091H Brassica oleracea
BolC9t53195H Brassica oleracea
BolC9t53197H Brassica oleracea
BraA09t35907Z Brassica rapa
BraA09t35909Z Brassica rapa
BraA10t42613Z Brassica rapa
C02p39990 Brassica napus
C05p03090 Brassica napus
C09p02680 Brassica napus
C09p02690 Brassica napus
C09p02710 Brassica napus
CAN.G723.13 Capsicum annuum
CANSAT56G3629 Cannabis sativa
CANSAT64G1338 Cannabis sativa
CARHR004340 Cardamine hirsuta
CARHR251750 Cardamine hirsuta
Carub.0001s0417 Capsella rubella
Carub.0006s3375 Capsella rubella
Ca_06752_v3 Cicer arietinum L.
Ca_20395_v3 Cicer arietinum L.
CBR_g49334 Chara braunii
Cc08_g08400 Coffea canephora
CDE04G0683 Ceratophyllum demersum
CDE07G1175 Ceratophyllum demersum
Cfa013873 Carpinus fangiana
Cfa014548 Carpinus fangiana
Ciclev10002148m.g Citrus clementina
Ciclev10016167m.g Citrus clementina
CiPaw.03G170300 Carya illinoinensis
CiPaw.07G157100 Carya illinoinensis
CiPaw.08G060500 Carya illinoinensis
ClCG02G001440 Citrullus lanatus
ClCG06G002850 Citrullus lanatus
COL.COLO4_05117 Corchorus olitorius
COL.COLO4_26246 Corchorus olitorius
Cpa.g.sc189.28 Carica papaya
Cpa.g.sc34.105 Carica papaya
Cre08.g379650 Chlamydomonas reinhardtii
CsaV3_6G009010 Cucumis sativus L.
CsaV3_7G004010 Cucumis sativus L.
CSS0001896 Camellia sinensis var. sinensis
DCAR_025116 Daucus carota
Dinv22129 Davidia involucrata
Dinv37403 Davidia involucrata
Duzib052G1040 Durio zibethinus
Duzib106G1774 Durio zibethinus
Duzib128G0840 Durio zibethinus
Duzib132G0823 Durio zibethinus
ECA233G5308 Erigeron canadensis
EL10Ac1g00616 Beta vulgaris
EL10Ac1g01226 Beta vulgaris
EL10As2g23191 Beta vulgaris
Eucgr.D00110 Eucalyptus grandis
Eucgr.G02673 Eucalyptus grandis
FAN02G4251 Fragaria x ananassa
FAN05G1808 Fragaria x ananassa
FAN09G0489 Fragaria x ananassa
FAN14G0311 Fragaria x ananassa
FAN15G0100 Fragaria x ananassa
FAN20G0209 Fragaria x ananassa
FAN20G2819 Fragaria x ananassa
FAN26G2640 Fragaria x ananassa
FAN27G0030 Fragaria x ananassa
FvH4_2g39340 Fragaria vesca
FvH4_6g44790 Fragaria vesca
Glyma.07G006600 Glycine max
Glyma.08G207200 Glycine max
Glyma.12G231600 Glycine max
Glyma.13G265900 Glycine max
Gohir.A04G105600 Gossypium hirsutum
Gohir.A04G105701 Gossypium hirsutum
Gohir.A06G007300 Gossypium hirsutum
Gohir.A10G183300 Gossypium hirsutum
Gohir.D04G145400 Gossypium hirsutum
Gohir.D04G145500 Gossypium hirsutum
Gohir.D06G003200 Gossypium hirsutum
Gohir.D10G190100 Gossypium hirsutum
Gorai.010G007900 Gossypium raimondii
Gorai.011G213200 Gossypium raimondii
Gorai.012G131500 Gossypium raimondii
Gorai.012G131600 Gossypium raimondii
GSVIVG01009769001 Vitis vinifera
HanXRQChr15g0488141 Helianthus annuus
Haze_13093 Corylus avellana
Haze_22553 Corylus avellana
Hma1.2p1_0798F.1_g219640 Hydrangea macrophylla
HPP92_005357 Vanilla planifolia
HPP92_017717 Vanilla planifolia
Hund25413 Selenicereus undatus
Hund26895 Selenicereus undatus
Lalb_Chr01g0012571 Lupinus albus
Lalb_Chr14g0366641 Lupinus albus
Lalb_Chr22g0356361 Lupinus albus
Lj1A261T31 Lonicera japonica
Lj1C261G5 Lonicera japonica
Lj3g0015295 Lotus japonicus
Lj3g0025934 Lotus japonicus
Lsat_1_v5_gn_8_2181 Lactuca sativa
Manes.10G061600 Manihot esculenta
Manes.18G021101 Manihot esculenta
Mapoly0006s0053 Marchantia polymorpha
MBI05_g14183_MAGBIO Magnolia biondii
MD08G1024700 Malus domestica
MD09G1093200 Malus domestica
MD15G1022400 Malus domestica
MD17G1083300 Malus domestica
Medtr2g090035 Medicago truncatula
Medtr2g090045 Medicago truncatula
Medtr4g011960 Medicago truncatula
Medtr5g024800 Medicago truncatula
MELO3C018778.2 Cucumis melo
MELO3C022242.2 Cucumis melo
Migut.H00470 Erythranthe guttata
MSTRG.15400 Avicennia marina
Nitab4.5_0000320g0010 Nicotiana tabacum
Nitab4.5_0000320g0060 Nicotiana tabacum
Nitab4.5_0019189g0010 Nicotiana tabacum
Nn2g14383 Nelumbo nucifera
Oeu004883.1 Olea europaea
Oeu050747.1 Olea europaea
Os02g0614400 Oryza sativa ssp. japonica
Os07g0568500 Oryza sativa ssp. japonica
Peaxi162Scf00476g00222 Petunia axillaris
PGR031G2450 Punica granatum
PGR044G0169 Punica granatum
PGSC0003DMG400006388 Solanum tuberosum
PGSC0003DMG400023517 Solanum tuberosum
Phvul.005G078300 Phaseolus vulgaris
Phvul.005G079300 Phaseolus vulgaris
Phvul.010G151100 Phaseolus vulgaris
Potri.002G031800 Populus trichocarpa
Potri.005G231400 Populus trichocarpa
Potri.019G108800 Populus trichocarpa
Pp3c16_16340 Physcomitrium patens
Pp3c27_1700 Physcomitrium patens
Prupe.1G179600 Prunus persica
Prupe.3G232000 Prunus persica
Prupe.7G049100 Prunus persica
Psat5g269960 Pisum sativum
Psat7g252800 Pisum sativum
PSO063G3586 Papaver somniferum
PSO782G0368 Papaver somniferum
QL02p009586 Quercus lobata
QL08p037427 Quercus lobata
RcHm_v2.0_Chr2g0161961 Rosa chinensis
RcHm_v2.0_Chr3g0469611 Rosa chinensis
RcHm_v2.0_Chr6g0301671 Rosa chinensis
Rhsim03G0243500 Rhododendron simsii
Rhsim13G0011100 Rhododendron simsii
Sabra02G0025800 Salix brachista
Sabra05G0178600 Salix brachista
Sabra19G0115400 Salix brachista
Sabra19G0116400 Salix brachista
Sabra19G0116600 Salix brachista
Sabra19G0137900 Salix brachista
Sabra19G0138000 Salix brachista
SalBow5G0072 Salvia bowleyana
Sc15g0007220 Simmondsia chinensis
Sed0000841 Sechium edule
Sed0021948 Sechium edule
SEGI_16091 Sequoiadendron giganteum
SEGI_18894 Sequoiadendron giganteum
SEGI_19714 Sequoiadendron giganteum
SGA_v2.0_scaffold204G41602 Striga asiatica
SHI14853 Sapria himalayana
SHI22829 Sapria himalayana
SHI28954 Sapria himalayana
SHI34893 Sapria himalayana
SMO147G0057 Selaginella moellendorffii
Solyc04g076740.3 Solanum lycopersicum
Solyc05g054720.3 Solanum lycopersicum
Sopen04g030450 Solanum pennellii
Sopen04g030500 Solanum pennellii
Sopen05g033190 Solanum pennellii
Sp1g03780 Schrenkiella parvula
Sp6g03350 Schrenkiella parvula
TAR625G0345 Trochodendron aralioides
TAR633G2799 Trochodendron aralioides
THA.LOC104801019 Tarenaya hassleriana
THA.LOC104801187 Tarenaya hassleriana
Thecc.08G033200 Theobroma cacao
Thecc.10G165000 Theobroma cacao
Thhalv10026827m.g Eutrema salsugineum
Thhalv10028869m.g Eutrema salsugineum
TPR.G20846 Trifolium pratense
TPR.G24182 Trifolium pratense
TPR.G27099 Trifolium pratense
TPR.G27129 Trifolium pratense
TWI36G1353 Tripterygium wilfordii
TWI36G1647 Tripterygium wilfordii
TWI75G0803 Tripterygium wilfordii
unitig_736.g22368 Utricularia gibba
vmacro01899 Vaccinium macrocarpon
vmacro06210 Vaccinium macrocarpon
vmacro23357 Vaccinium macrocarpon
VMungo0173G0001 Vigna mungo
VMungo1080G0994 Vigna mungo
VMungo1080G1491 Vigna mungo
Zm00001eb107180 Zea mays
Zm00001eb247090 Zea mays
Zm00001eb324670 Zea mays

User provided reference genes

Program Settings