Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p23100 Brassica napus
A04p03510 Brassica napus
A05p02090 Brassica napus
A09p49560 Brassica napus
Aa31LG10G11550 Aethionema arabicum
Aa31LG3G820 Aethionema arabicum
Actinidia01827 Actinidia chinensis
Ah.10g030130 Amaranthus hybridus
AL4G39150 Arabidopsis lyrata
AL5G38080 Arabidopsis lyrata
Aqoxy2G00396 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea
AT2G41180 Arabidopsis thaliana
AT3G56710 Arabidopsis thaliana
ATR1096G079 Amborella trichopoda
Atru.chr1.1439 Acer truncatum
Atru.chr12.1277 Acer truncatum
BcaB01g03488 Brassica carinata
BcaB02g07639 Brassica carinata
BcaB02g08350 Brassica carinata
BcaB02g08351 Brassica carinata
BcaC01g05357 Brassica carinata
BcaC02g09865 Brassica carinata
BcaC02g09866 Brassica carinata
BcaC02g12758 Brassica carinata
BcaC07g39979 Brassica carinata
BcaC07g40124 Brassica carinata
BcaC08g44803 Brassica carinata
BolC3t15126H Brassica oleracea
BolC4t21893H Brassica oleracea
BolC4t25224H Brassica oleracea
BolC4t25225H Brassica oleracea
BolC6t37544H Brassica oleracea
BolC8t50812H Brassica oleracea
BraA03t11531Z Brassica rapa
BraA04t16084Z Brassica rapa
BraA04t16085Z Brassica rapa
BraA05t19205Z Brassica rapa
BraA09t40409Z Brassica rapa
C03p27500 Brassica napus
C04p02500 Brassica napus
C04p35760 Brassica napus
C06p23750 Brassica napus
C08p31950 Brassica napus
CAN.G134.10 Capsicum annuum
CANSAT56G2792 Cannabis sativa
CANSAT64G2862 Cannabis sativa
CARHR136270 Cardamine hirsuta
CARHR166850 Cardamine hirsuta
Carub.0004s2349 Capsella rubella
Carub.0005s2345 Capsella rubella
Ca_08391_v3 Cicer arietinum L.
Ca_12961_v3 Cicer arietinum L.
Cc06_g19310 Coffea canephora
CDE08G1203 Ceratophyllum demersum
CDE09G1110 Ceratophyllum demersum
Cfa010941 Carpinus fangiana
Cfa020005 Carpinus fangiana
Ciclev10002803m.g Citrus clementina
CiPaw.09G047800 Carya illinoinensis
CiPaw.10G040200 Carya illinoinensis
CiPaw.13G015100 Carya illinoinensis
CiPaw.14G008700 Carya illinoinensis
ClCG04G004500 Citrullus lanatus
ClCG05G026910 Citrullus lanatus
ClCG10G016220 Citrullus lanatus
COL.COLO4_04711 Corchorus olitorius
Cpa.g.sc5.168 Carica papaya
CsaV3_3G040160 Cucumis sativus L.
CsaV3_4G029660 Cucumis sativus L.
CsaV3_5G036860 Cucumis sativus L.
CSS0001226 Camellia sinensis var. sinensis
CSS0032574 Camellia sinensis var. sinensis
CSS0033077 Camellia sinensis var. sinensis
DCAR_013643 Daucus carota
DCAR_025326 Daucus carota
Dinv06180 Davidia involucrata
Dinv12041 Davidia involucrata
Dinv32015 Davidia involucrata
Dinv44699 Davidia involucrata
Duzib106G0159 Durio zibethinus
Duzib106G1811 Durio zibethinus
Duzib114G0524 Durio zibethinus
Duzib128G1163 Durio zibethinus
ECA234G2872 Erigeron canadensis
ECA248G1904 Erigeron canadensis
Eucgr.A02242 Eucalyptus grandis
Eucgr.G03218 Eucalyptus grandis
FAN01G3097 Fragaria x ananassa
FAN02G0528 Fragaria x ananassa
FAN03G0828 Fragaria x ananassa
FAN05G2143 Fragaria x ananassa
FAN06G3677 Fragaria x ananassa
FAN09G2803 Fragaria x ananassa
FAN10G2850 Fragaria x ananassa
FvH4_6g25410 Fragaria vesca
FvH4_7g03520 Fragaria vesca
Glyma.03G127800 Glycine max
Glyma.04G134200 Glycine max
Glyma.13G193800 Glycine max
Glyma.15G232200 Glycine max
Glyma.19G130400 Glycine max
Gohir.A05G399600 Gossypium hirsutum
Gohir.A10G187100 Gossypium hirsutum
Gohir.A11G307100 Gossypium hirsutum
Gohir.D04G016200 Gossypium hirsutum
Gohir.D10G194600 Gossypium hirsutum
Gohir.D11G322600 Gossypium hirsutum
Gorai.007G352700 Gossypium raimondii
Gorai.011G217100 Gossypium raimondii
Gorai.012G018900 Gossypium raimondii
Haze_20227 Corylus avellana
HPP92_028460 Vanilla planifolia
Lalb_Chr06g0173671 Lupinus albus
Lalb_Chr19g0133001 Lupinus albus
Lalb_Chr21g0315251 Lupinus albus
Lalb_Chr22g0357431 Lupinus albus
Lalb_Chr24g0400351 Lupinus albus
Lj1g0016303 Lotus japonicus
Lj3g0008937 Lotus japonicus
Lj3g0024515 Lotus japonicus
Lsat_1_v5_gn_4_30161 Lactuca sativa
Lsat_1_v5_gn_5_156980 Lactuca sativa
Manes.04G157400 Manihot esculenta
Manes.09G004900 Manihot esculenta
Manes.11G007000 Manihot esculenta
MD14G1088500 Malus domestica
Medtr3g013980 Medicago truncatula
Medtr7g089860 Medicago truncatula
Medtr8g040080 Medicago truncatula
MELO3C009755.2 Cucumis melo
MELO3C012484.2 Cucumis melo
MELO3C019076.2 Cucumis melo
Migut.B00886 Erythranthe guttata
Migut.B01240 Erythranthe guttata
Migut.J01657 Erythranthe guttata
Migut.K00136 Erythranthe guttata
Migut.N01854 Erythranthe guttata
MSTRG.10792 Avicennia marina
MSTRG.26159 Avicennia marina
MSTRG.28034 Avicennia marina
MSTRG.5073 Avicennia marina
Nitab4.5_0003481g0110 Nicotiana tabacum
Nitab4.5_0005808g0010 Nicotiana tabacum
Nn2g14777 Nelumbo nucifera
Nn7g36749 Nelumbo nucifera
Oeu006786.1 Olea europaea
Oeu011571.1 Olea europaea
Oeu013084.1 Olea europaea
Oeu029509.1 Olea europaea
Oeu053079.1 Olea europaea
Oeu059346.1 Olea europaea
Oeu064130.1 Olea europaea
Os01g0808900 Oryza sativa ssp. japonica
Os05g0390800 Oryza sativa ssp. japonica
Os05g0491700 Oryza sativa ssp. japonica
Os07g0687400 Oryza sativa ssp. japonica
Peaxi162Scf00082g00006 Petunia axillaris
PGR031G0048 Punica granatum
PGR031G3974 Punica granatum
PGSC0003DMG400005401 Solanum tuberosum
Phvul.001G123400 Phaseolus vulgaris
Phvul.005G024800 Phaseolus vulgaris
Phvul.011G203450 Phaseolus vulgaris
Potri.001G029700 Populus trichocarpa
Potri.003G194700 Populus trichocarpa
Potri.006G038900 Populus trichocarpa
Potri.016G036600 Populus trichocarpa
Prupe.2G041200 Prunus persica
Prupe.7G038200 Prunus persica
Psat3g078800 Pisum sativum
Psat3g078880 Pisum sativum
Psat4g145360 Pisum sativum
Psat5g220360 Pisum sativum
PSO339G5722 Papaver somniferum
PSO384G2085 Papaver somniferum
QL04p017793 Quercus lobata
QL04p017813 Quercus lobata
QL04p018674 Quercus lobata
QL07p010402 Quercus lobata
RcHm_v2.0_Chr1g0325821 Rosa chinensis
RcHm_v2.0_Chr2g0125651 Rosa chinensis
Rhsim04G0111200 Rhododendron simsii
Rhsim04G0112500 Rhododendron simsii
Rhsim07G0068200 Rhododendron simsii
Sabra03G0145400 Salix brachista
Sabra06G0026200 Salix brachista
Sabra16G0038800 Salix brachista
SalBow5G5227 Salvia bowleyana
SalBow6G5116 Salvia bowleyana
SalBow6G6653 Salvia bowleyana
Sc10g0004500 Simmondsia chinensis
Sc11g0006360 Simmondsia chinensis
Sed0000723 Sechium edule
Sed0004403 Sechium edule
Sed0006618 Sechium edule
Sed0012008 Sechium edule
Sed0014788 Sechium edule
SGA_v2.0_scaffold105G30292 Striga asiatica
SGA_v2.0_scaffold105G30310 Striga asiatica
SGA_v2.0_scaffold232G43495 Striga asiatica
SGA_v2.0_scaffold43G16289 Striga asiatica
SGA_v2.0_scaffold69G23150 Striga asiatica
Solyc01g096510.2 Solanum lycopersicum
Sopen01g040240 Solanum pennellii
Sp4g23480 Schrenkiella parvula
Sp5g05850 Schrenkiella parvula
TAR623G1017 Trochodendron aralioides
TAR633G1036 Trochodendron aralioides
THA.LOC104803260 Tarenaya hassleriana
THA.LOC104816020 Tarenaya hassleriana
THA.LOC104820144 Tarenaya hassleriana
THA.LOC104824399 Tarenaya hassleriana
THA.LOC109116532 Tarenaya hassleriana
Thecc.05G134100 Theobroma cacao
Thecc.10G149600 Theobroma cacao
Thhalv10006291m.g Eutrema salsugineum
Thhalv10017346m.g Eutrema salsugineum
TPR.G22516 Trifolium pratense
TPR.G31150 Trifolium pratense
TPR.G8953 Trifolium pratense
TWI15G0153 Tripterygium wilfordii
TWI53G1119 Tripterygium wilfordii
unitig_26.g9507 Utricularia gibba
unitig_748.g7224 Utricularia gibba
VMungo1080G0254 Vigna mungo
VMungo1383G0235 Vigna mungo
Zm00001eb005210 Zea mays
Zm00001eb015160 Zea mays
Zm00001eb352450 Zea mays
Zm00001eb369260 Zea mays
Zm00001eb395660 Zea mays

User provided reference genes

Program Settings