Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p01520 Brassica napus
A09p00170 Brassica napus
Aa31LG1G27660 Aethionema arabicum
Aa31LG5G840 Aethionema arabicum
Actinidia02807 Actinidia chinensis
Actinidia22709 Actinidia chinensis
Actinidia27344 Actinidia chinensis
Actinidia28491 Actinidia chinensis
Actinidia28591 Actinidia chinensis
Ah.05g179930 Amaranthus hybridus
AL4G45550 Arabidopsis lyrata
AL6G52240 Arabidopsis lyrata
Aqoxy416s001 Aquilegia oxysepala
Aqoxy7G00219 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.35FBJ4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8837KU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CS824N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IH31ZD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PXV9JU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R6IGW9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SH3ZYI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZU4V4B Arachis hypogaea
AT2G46270 Arabidopsis thaliana
AT4G01120 Arabidopsis thaliana
ATR0197G024 Amborella trichopoda
Atru.chr5.612 Acer truncatum
Atru.chr5.613 Acer truncatum
AUR62004443 Chenopodium quinoa
AUR62021054 Chenopodium quinoa
AUR62023507 Chenopodium quinoa
AUR62031478 Chenopodium quinoa
BcaB01g02334 Brassica carinata
BcaB01g03232 Brassica carinata
BcaC01g05080 Brassica carinata
BcaC01g05081 Brassica carinata
BcaC01g05084 Brassica carinata
BcaC01g05086 Brassica carinata
BcaC01g05088 Brassica carinata
BcaC02g11928 Brassica carinata
BcaC02g12519 Brassica carinata
BcaC04g24127 Brassica carinata
BolC3t15394H Brassica oleracea
BolC4t21824H Brassica oleracea
BolC9t53014H Brassica oleracea
BraA05t19148Z Brassica rapa
BraA09t35745Z Brassica rapa
C03p30460 Brassica napus
C04p01720 Brassica napus
C09p00800 Brassica napus
CAN.G986.51 Capsicum annuum
CANSAT21G1582 Cannabis sativa
CANSAT56G2985 Cannabis sativa
CANSAT80G0627 Cannabis sativa
CARHR141540 Cardamine hirsuta
CARHR249170 Cardamine hirsuta
Carub.0004s2898 Capsella rubella
Carub.0006s3618 Capsella rubella
Ca_09488_v3 Cicer arietinum L.
Ca_23564_v3 Cicer arietinum L.
Cc02_g38910 Coffea canephora
CDE08G1210 Ceratophyllum demersum
Cfa003839 Carpinus fangiana
Cfa012865 Carpinus fangiana
Ciclev10020314m.g Citrus clementina
CiPaw.01G071000 Carya illinoinensis
CiPaw.02G038000 Carya illinoinensis
ClCG05G001030 Citrullus lanatus
COL.COLO4_06341 Corchorus olitorius
Cpa.g.sc194.18 Carica papaya
Cpa.g.sc50.128 Carica papaya
Cpa.g.sc50.129 Carica papaya
CsaV3_3G008360 Cucumis sativus L.
CSS0008805 Camellia sinensis var. sinensis
CSS0046846 Camellia sinensis var. sinensis
DCAR_006961 Daucus carota
Dinv32548 Davidia involucrata
Dinv38872 Davidia involucrata
Dinv43888 Davidia involucrata
Duzib133G0452 Durio zibethinus
Duzib138G1760 Durio zibethinus
ECA234G0946 Erigeron canadensis
ECA236G1222 Erigeron canadensis
EL10Ac1g00320 Beta vulgaris
EL10Ac3g05360 Beta vulgaris
Eucgr.E00078 Eucalyptus grandis
FAN01G2403 Fragaria x ananassa
FAN03G0643 Fragaria x ananassa
FAN04G0268 Fragaria x ananassa
FAN06G1730 Fragaria x ananassa
FAN06G4642 Fragaria x ananassa
FAN08G1918 Fragaria x ananassa
FAN10G1972 Fragaria x ananassa
FAN10G2340 Fragaria x ananassa
FAN13G0794 Fragaria x ananassa
FAN13G1940 Fragaria x ananassa
FAN18G0501 Fragaria x ananassa
FAN18G1474 Fragaria x ananassa
FvH4_5g03860 Fragaria vesca
FvH4_5g03880 Fragaria vesca
FvH4_7g15810 Fragaria vesca
Glyma.03G255000 Glycine max
Glyma.07G060400 Glycine max
Glyma.16G029000 Glycine max
Glyma.19G252600 Glycine max
Gohir.A08G126200 Gossypium hirsutum
Gohir.A11G093900 Gossypium hirsutum
Gohir.A12G110600 Gossypium hirsutum
Gohir.D08G147500 Gossypium hirsutum
Gohir.D11G098900 Gossypium hirsutum
Gohir.D12G113600 Gossypium hirsutum
Gorai.004G153100 Gossypium raimondii
Gorai.007G105100 Gossypium raimondii
Gorai.008G123200 Gossypium raimondii
GSVIVG01019481001 Vitis vinifera
GSVIVG01027040001 Vitis vinifera
HanXRQChr02g0049941 Helianthus annuus
HanXRQChr04g0120731 Helianthus annuus
HanXRQChr14g0443951 Helianthus annuus
HanXRQChr17g0562621 Helianthus annuus
Haze_08693 Corylus avellana
Haze_15611 Corylus avellana
Hma1.2p1_0077F.1_g039840 Hydrangea macrophylla
Hma1.2p1_0216F.1_g091440 Hydrangea macrophylla
Hma1.2p1_0384F.1_g140960 Hydrangea macrophylla
Hma1.2p1_0952F.1_g240830 Hydrangea macrophylla
HPP92_011457 Vanilla planifolia
HPP92_022836 Vanilla planifolia
HPP92_022837 Vanilla planifolia
HPP92_026117 Vanilla planifolia
Hund04821 Selenicereus undatus
Hund27225 Selenicereus undatus
Hund27724 Selenicereus undatus
Hund27737 Selenicereus undatus
Lalb_Chr04g0261701 Lupinus albus
Lalb_Chr10g0100161 Lupinus albus
Lalb_Chr17g0342241 Lupinus albus
Lj1g0022187 Lotus japonicus
Lj3g0019075 Lotus japonicus
Lj7C504T14 Lonicera japonica
Lj8A212T67 Lonicera japonica
Lsat_1_v5_gn_3_139040 Lactuca sativa
Lsat_1_v5_gn_4_33560 Lactuca sativa
Lsat_1_v5_gn_7_1760 Lactuca sativa
Manes.01G249900 Manihot esculenta
Manes.05G026700 Manihot esculenta
MBI07_g11396_MAGBIO Magnolia biondii
MD01G1074700 Malus domestica
MD06G1099800 Malus domestica
MD06G1099900 Malus domestica
MD07G1143800 Malus domestica
MD14G1119500 Malus domestica
Medtr7g116890 Medicago truncatula
Medtr8g028150 Medicago truncatula
MELO3C006054.2 Cucumis melo
Migut.B01828 Erythranthe guttata
MSTRG.17316 Avicennia marina
MSTRG.20883 Avicennia marina
Nitab4.5_0000305g0190 Nicotiana tabacum
Nitab4.5_0002262g0160 Nicotiana tabacum
Nitab4.5_0003779g0050 Nicotiana tabacum
Nitab4.5_0007386g0010 Nicotiana tabacum
Nn1g01783 Nelumbo nucifera
Nn3g16395 Nelumbo nucifera
Nn7g37373 Nelumbo nucifera
Oeu022850.1 Olea europaea
Oeu036581.2 Olea europaea
Oeu063654.1 Olea europaea
Os01g0658900 Oryza sativa ssp. japonica
Os05g0569300 Oryza sativa ssp. japonica
Peaxi162Scf00403g00716 Petunia axillaris
Peaxi162Scf01012g00240 Petunia axillaris
PGR031G3045 Punica granatum
PGSC0003DMG400000088 Solanum tuberosum
PGSC0003DMG400033876 Solanum tuberosum
Phvul.006G109700 Phaseolus vulgaris
Phvul.010G108800 Phaseolus vulgaris
Potri.002G167100 Populus trichocarpa
Potri.014G094200 Populus trichocarpa
Prupe.2G182800 Prunus persica
Prupe.5G113500 Prunus persica
Psat3g004000 Pisum sativum
Psat3g138720 Pisum sativum
Psat4g158440 Pisum sativum
Psat4g178600 Pisum sativum
PSO063G7678 Papaver somniferum
PSO135G0850 Papaver somniferum
PSO384G3637 Papaver somniferum
QL02p015160 Quercus lobata
QL02p031686 Quercus lobata
QL04p059655 Quercus lobata
RcHm_v2.0_Chr1g0358601 Rosa chinensis
RcHm_v2.0_Chr7g0195651 Rosa chinensis
Rhsim07G0007600 Rhododendron simsii
Rhsim07G0085200 Rhododendron simsii
Sabra14G0068800 Salix brachista
SalBow3G2159 Salvia bowleyana
SalBow5G5039 Salvia bowleyana
Sc01g0003020 Simmondsia chinensis
Sc13g0009500 Simmondsia chinensis
Sed0002682 Sechium edule
Sed0018793 Sechium edule
SGA_v2.0_scaffold24G10683 Striga asiatica
SGA_v2.0_scaffold5G02980 Striga asiatica
SHI13201 Sapria himalayana
Solyc01g095460.3 Solanum lycopersicum
Solyc05g050220.3 Solanum lycopersicum
Sopen01g039210 Solanum pennellii
Sopen05g028650 Solanum pennellii
Sopen05g028660 Solanum pennellii
Sp4g28320 Schrenkiella parvula
Sp6g00990 Schrenkiella parvula
TAR375G0177 Trochodendron aralioides
TAR629G0874 Trochodendron aralioides
TAR636G0864 Trochodendron aralioides
THA.LOC104801386 Tarenaya hassleriana
THA.LOC104817330 Tarenaya hassleriana
THA.LOC104827687 Tarenaya hassleriana
Thecc.01G348400 Theobroma cacao
Thhalv10001533m.g Eutrema salsugineum
Thhalv10028761m.g Eutrema salsugineum
TPR.G4811 Trifolium pratense
TPR.G5071 Trifolium pratense
TWI14G0006 Tripterygium wilfordii
TWI23G0265 Tripterygium wilfordii
unitig_60.g25629 Utricularia gibba
unitig_699.g19804 Utricularia gibba
unitig_747.g21325 Utricularia gibba
vmacro22521 Vaccinium macrocarpon
VMungo0331G1027 Vigna mungo
VMungo0540G1601 Vigna mungo
Zm00001eb157860 Zea mays
Zm00001eb296340 Zea mays

User provided reference genes

Program Settings