Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p28350 Brassica napus
A04p17040 Brassica napus
A08p06260 Brassica napus
A09p18500 Brassica napus
Aa31LG2G10870 Aethionema arabicum
Aa31LG4G11400 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1562 Anthoceros agrestis
Actinidia19621 Actinidia chinensis
Actinidia28430 Actinidia chinensis
Actinidia29660 Actinidia chinensis
Actinidia29661 Actinidia chinensis
Ah.05g171450 Amaranthus hybridus
AL2G18260 Arabidopsis lyrata
AL8G23560 Arabidopsis lyrata
Aqoxy5G01357 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea
AT1G58250 Arabidopsis thaliana
AT5G49680 Arabidopsis thaliana
ATR0767G155 Amborella trichopoda
Atru.chr13.988 Acer truncatum
Atru.chr13.989 Acer truncatum
AUR62014366 Chenopodium quinoa
AUR62019108 Chenopodium quinoa
BcaB04g20194 Brassica carinata
BcaC02g08647 Brassica carinata
BcaC04g22122 Brassica carinata
BcaC07g37279 Brassica carinata
BcaC09g49498 Brassica carinata
BolC1t03549H Brassica oleracea
BolC4t26752H Brassica oleracea
BolC8t47550H Brassica oleracea
BolC8t47553H Brassica oleracea
BolC9t55228H Brassica oleracea
BraA01t02963Z Brassica rapa
BraA04t17332Z Brassica rapa
BraA08t32630Z Brassica rapa
BraA09t37476Z Brassica rapa
C01p35900 Brassica napus
C01p35910 Brassica napus
C04p51730 Brassica napus
C08p07060 Brassica napus
C08p07090 Brassica napus
C09p23100 Brassica napus
CAN.G1104.5 Capsicum annuum
CAN.G1104.6 Capsicum annuum
CAN.G193.3 Capsicum annuum
CAN.G375.36 Capsicum annuum
CAN.G375.37 Capsicum annuum
CAN.G375.38 Capsicum annuum
CANSAT11G0038 Cannabis sativa
CANSAT25G0689 Cannabis sativa
CANSAT80G1718 Cannabis sativa
CARHR053650 Cardamine hirsuta
CARHR053740 Cardamine hirsuta
CARHR259160 Cardamine hirsuta
Carub.0002s0632 Capsella rubella
Carub.0008s0955 Capsella rubella
Ca_05459_v3 Cicer arietinum L.
Ca_05461_v3 Cicer arietinum L.
Ca_16019_v3 Cicer arietinum L.
CBR_g40338 Chara braunii
CBR_g40341 Chara braunii
Cc10_g08510 Coffea canephora
CDE07G0230 Ceratophyllum demersum
CDE07G0298 Ceratophyllum demersum
Cfa013811 Carpinus fangiana
Ciclev10000004m.g Citrus clementina
CiPaw.07G163600 Carya illinoinensis
ClCG08G011580 Citrullus lanatus
COL.COLO4_35270 Corchorus olitorius
Cpa.g.sc21.36 Carica papaya
Cpa.g.sc21.37 Carica papaya
Cpa.g.sc21.38 Carica papaya
CsaV3_2G030160 Cucumis sativus L.
CSS0008058 Camellia sinensis var. sinensis
CSS0043684 Camellia sinensis var. sinensis
CSS0046161 Camellia sinensis var. sinensis
DCAR_024958 Daucus carota
DCAR_032088 Daucus carota
Dinv44873 Davidia involucrata
Duzib041G0528 Durio zibethinus
Duzib116G0095 Durio zibethinus
ECA232G1296 Erigeron canadensis
ECA247G2620 Erigeron canadensis
EL10Ac1g00492 Beta vulgaris
Eucgr.F00435 Eucalyptus grandis
FAN04G1888 Fragaria x ananassa
FAN08G1437 Fragaria x ananassa
FAN13G0555 Fragaria x ananassa
FAN18G2688 Fragaria x ananassa
FvH4_5g34390 Fragaria vesca
Glyma.02G215800 Glycine max
Glyma.04G096600 Glycine max
Glyma.04G096666 Glycine max
Glyma.06G098300 Glycine max
Gohir.A05G218800 Gossypium hirsutum
Gohir.A05G264400 Gossypium hirsutum
Gohir.D05G221500 Gossypium hirsutum
Gohir.D05G266900 Gossypium hirsutum
Gorai.009G228700 Gossypium raimondii
Gorai.009G279000 Gossypium raimondii
GSVIVG01009199001 Vitis vinifera
HanXRQChr02g0046051 Helianthus annuus
HanXRQChr14g0447811 Helianthus annuus
Haze_22479 Corylus avellana
Haze_22482 Corylus avellana
HPP92_018503 Vanilla planifolia
HPP92_018504 Vanilla planifolia
HPP92_024863 Vanilla planifolia
Hund17266 Selenicereus undatus
Hund17267 Selenicereus undatus
Hund17268 Selenicereus undatus
Hund17269 Selenicereus undatus
Hund17270 Selenicereus undatus
Hund17271 Selenicereus undatus
Hund26821 Selenicereus undatus
Lalb_Chr08g0242591 Lupinus albus
Lalb_Chr10g0102771 Lupinus albus
Lj1g0004035 Lotus japonicus
Lj4C86G6 Lonicera japonica
LjContig00408g0017356 Lotus japonicus
Lsat_1_v5_gn_1_1961 Lactuca sativa
Lsat_1_v5_gn_7_70960 Lactuca sativa
Lsat_1_v5_gn_9_80681 Lactuca sativa
Lsat_1_v5_gn_9_80701 Lactuca sativa
Lsat_1_v5_gn_9_80721 Lactuca sativa
Manes.05G189400 Manihot esculenta
Manes.18G056500 Manihot esculenta
Mapoly0099s0021 Marchantia polymorpha
MBI16_g06013_MAGBIO Magnolia biondii
MCO11G583 Micromonas commoda
MD08G1201600 Malus domestica
MD08G1201800 Malus domestica
MD08G1202400 Malus domestica
MD08G1202500 Malus domestica
MD08G1208100 Malus domestica
MD08G1208200 Malus domestica
MD08G1208300 Malus domestica
MD15G1388100 Malus domestica
Medtr3g099880 Medicago truncatula
Medtr5g066650 Medicago truncatula
MELO3C011076.2 Cucumis melo
Migut.N02861 Erythranthe guttata
MSTRG.24431 Avicennia marina
Nitab4.5_0000131g0060 Nicotiana tabacum
Nitab4.5_0000354g0140 Nicotiana tabacum
Nitab4.5_0005065g0010 Nicotiana tabacum
Nitab4.5_0005345g0040 Nicotiana tabacum
Nn1g05621 Nelumbo nucifera
Nn7g36727 Nelumbo nucifera
Oeu038175.1 Olea europaea
Oeu038176.1 Olea europaea
Os03g0353600 Oryza sativa ssp. japonica
Os03g0353701 Oryza sativa ssp. japonica
Os03g0681201 Oryza sativa ssp. japonica
Os03g0681300 Oryza sativa ssp. japonica
Peaxi162Scf00160g01034 Petunia axillaris
Peaxi162Scf01112g00017 Petunia axillaris
PGR042G2097 Punica granatum
PGSC0003DMG400002051 Solanum tuberosum
Phvul.008G183000 Phaseolus vulgaris
Phvul.009G035200 Phaseolus vulgaris
Potri.002G110700 Populus trichocarpa
Pp3c12_12980 Physcomitrium patens
PRCOL_00002452 Prasinoderma coloniale
Prupe.1G535700 Prunus persica
Psat2g064080 Pisum sativum
Psat2g064120 Pisum sativum
Psat2g086080 Pisum sativum
Psat5g047200 Pisum sativum
Psat7g143040 Pisum sativum
PSO094G0001 Papaver somniferum
PSO170G4177 Papaver somniferum
PSO210G5781 Papaver somniferum
QL09p018203 Quercus lobata
QL09p018218 Quercus lobata
RcHm_v2.0_Chr7g0235031 Rosa chinensis
RcHm_v2.0_Chr7g0235041 Rosa chinensis
Rhsim06G0070200 Rhododendron simsii
Rhsim06G0070400 Rhododendron simsii
Rhsim07G0212900 Rhododendron simsii
Sabra02G0087200 Salix brachista
Sabra05G0118900 Salix brachista
SalBow2G2368 Salvia bowleyana
Sc26g0003000 Simmondsia chinensis
Sed0001865 Sechium edule
Sed0007128 Sechium edule
SEGI_04147 Sequoiadendron giganteum
SEGI_15502 Sequoiadendron giganteum
SEGI_17287 Sequoiadendron giganteum
SEGI_25281 Sequoiadendron giganteum
SEGI_34078 Sequoiadendron giganteum
SEGI_38853 Sequoiadendron giganteum
SGA_v2.0_scaffold235G43665 Striga asiatica
SHI00996 Sapria himalayana
SHI00997 Sapria himalayana
SHI00998 Sapria himalayana
SHI01002 Sapria himalayana
SMO116G0207 Selaginella moellendorffii
Solyc04g076540.4 Solanum lycopersicum
Solyc04g076550.3 Solanum lycopersicum
Solyc12g088010.2 Solanum lycopersicum
Sopen04g030270 Solanum pennellii
Sopen12g030040 Solanum pennellii
Sp1g33855 Schrenkiella parvula
Sp1g33860 Schrenkiella parvula
Sp2g05360 Schrenkiella parvula
Sp4g01560 Schrenkiella parvula
TAR381G0245 Trochodendron aralioides
TAR625G0757 Trochodendron aralioides
THA.LOC104817630 Tarenaya hassleriana
THA.LOC104823692 Tarenaya hassleriana
Thecc.08G073100 Theobroma cacao
Thhalv10000004m.g Eutrema salsugineum
Thhalv10023209m.g Eutrema salsugineum
TPR.G26343 Trifolium pratense
TPR.G30876 Trifolium pratense
TPR.G6371 Trifolium pratense
TWI12G0386 Tripterygium wilfordii
TWI56G0278 Tripterygium wilfordii
unitig_578.g16182 Utricularia gibba
vmacro04640 Vaccinium macrocarpon
vmacro04641 Vaccinium macrocarpon
vmacro21352 Vaccinium macrocarpon
vmacro21353 Vaccinium macrocarpon
vmacro21354 Vaccinium macrocarpon
vmacro21355 Vaccinium macrocarpon
vmacro21356 Vaccinium macrocarpon
VMungo0647G0360 Vigna mungo
VMungo1127G1859 Vigna mungo
VMungo1309G0011 Vigna mungo
Zm00001eb051870 Zea mays
Zm00001eb394580 Zea mays

User provided reference genes

Program Settings