Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p00260 Brassica napus
A02p43530 Brassica napus
A03p09490 Brassica napus
A06p31640 Brassica napus
A09p08870 Brassica napus
A10p09020 Brassica napus
A10p27540 Brassica napus
Aa31LG1G17080 Aethionema arabicum
Aa31LG3G17190 Aethionema arabicum
Actinidia28896 Actinidia chinensis
Actinidia33358 Actinidia chinensis
Ah.04g159710 Amaranthus hybridus
AL6G20380 Arabidopsis lyrata
AL6G30970 Arabidopsis lyrata
AL8G42330 Arabidopsis lyrata
Aqoxy1G00393 Aquilegia oxysepala
Aqoxy6G00467 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9R5XSH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A4AUQP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CBHP4D Arachis hypogaea
AT5G09960 Arabidopsis thaliana
AT5G19473 Arabidopsis thaliana
AT5G64850 Arabidopsis thaliana
ATR0564G009 Amborella trichopoda
Atru.chr3.2999 Acer truncatum
Atru.chr4.346 Acer truncatum
BcaB01g04859 Brassica carinata
BcaB01g05147 Brassica carinata
BcaB02g09835 Brassica carinata
BcaB04g19997 Brassica carinata
BcaB05g21518 Brassica carinata
BcaB07g29762 Brassica carinata
BcaC01g02717 Brassica carinata
BcaC01g02719 Brassica carinata
BcaC03g13286 Brassica carinata
BcaC03g18283 Brassica carinata
BcaC04g23276 Brassica carinata
BcaNung06988 Brassica carinata
BolC2t06380H Brassica oleracea
BolC2t12428H Brassica oleracea
BolC3t13577H Brassica oleracea
BolC3t18392H Brassica oleracea
BolC9t53929H Brassica oleracea
BolC9t58537H Brassica oleracea
BraA02t05010Z Brassica rapa
BraA02t09281Z Brassica rapa
BraA03t10267Z Brassica rapa
BraA06t26100Z Brassica rapa
BraA09t36538Z Brassica rapa
BraA10t44806Z Brassica rapa
C02p04170 Brassica napus
C02p63620 Brassica napus
C03p11070 Brassica napus
C03p61320 Brassica napus
C09p10290 Brassica napus
C09p56830 Brassica napus
C09p67610 Brassica napus
CAN.G1056.1 Capsicum annuum
CAN.G1619.3 Capsicum annuum
CANSAT01G0734 Cannabis sativa
CANSAT54G1823 Cannabis sativa
CARHR193450 Cardamine hirsuta
CARHR203370 Cardamine hirsuta
CARHR278860 Cardamine hirsuta
Carub.0006s0840 Capsella rubella
Carub.0006s1781 Capsella rubella
Carub.0008s2568 Capsella rubella
Cc07_g16300 Coffea canephora
CDE05G1218 Ceratophyllum demersum
CDE05G1734 Ceratophyllum demersum
Ciclev10018107m.g Citrus clementina
Ciclev10026820m.g Citrus clementina
CiPaw.03G134100 Carya illinoinensis
CiPaw.04G091400 Carya illinoinensis
CiPaw.13G149300 Carya illinoinensis
ClCG01G016140 Citrullus lanatus
ClCG02G001020 Citrullus lanatus
COL.COLO4_11006 Corchorus olitorius
Cpa.g.sc191.8 Carica papaya
CsaV3_2G017680 Cucumis sativus L.
CsaV3_6G042410 Cucumis sativus L.
CSS0004580 Camellia sinensis var. sinensis
CSS0010926 Camellia sinensis var. sinensis
CSS0017424 Camellia sinensis var. sinensis
CSS0021781 Camellia sinensis var. sinensis
CSS0039673 Camellia sinensis var. sinensis
CSS0046773 Camellia sinensis var. sinensis
DCAR_001372 Daucus carota
DCAR_014262 Daucus carota
Dinv15024 Davidia involucrata
Dinv19484 Davidia involucrata
Dinv42690 Davidia involucrata
Duzib187G0794 Durio zibethinus
ECA232G3996 Erigeron canadensis
ECA238G1147 Erigeron canadensis
EL10Ac6g14757 Beta vulgaris
Eucgr.I00320 Eucalyptus grandis
Eucgr.J00684 Eucalyptus grandis
FAN19G2300 Fragaria x ananassa
FAN21G0185 Fragaria x ananassa
FAN23G2482 Fragaria x ananassa
FAN26G2985 Fragaria x ananassa
FAN28G1232 Fragaria x ananassa
FAN28G1462 Fragaria x ananassa
FvH4_1g22590 Fragaria vesca
Glyma.04G219000 Glycine max
Glyma.05G184200 Glycine max
Glyma.06G146800 Glycine max
Glyma.08G142000 Glycine max
Gohir.A02G135500 Gossypium hirsutum
Gohir.A12G092400 Gossypium hirsutum
Gohir.D03G046500 Gossypium hirsutum
Gohir.D12G093700 Gossypium hirsutum
Gorai.003G047500 Gossypium raimondii
Gorai.008G101700 Gossypium raimondii
GSVIVG01022234001 Vitis vinifera
GSVIVG01037326001 Vitis vinifera
HanXRQChr09g0259721 Helianthus annuus
HanXRQChr14g0446091 Helianthus annuus
HanXRQChr15g0493491 Helianthus annuus
Haze_23253 Corylus avellana
Haze_25049 Corylus avellana
Hma1.2p1_0375F.1_g138750 Hydrangea macrophylla
HPP92_001700 Vanilla planifolia
HPP92_004319 Vanilla planifolia
HPP92_011258 Vanilla planifolia
HPP92_027833 Vanilla planifolia
Hund19653 Selenicereus undatus
Lalb_Chr08g0238811 Lupinus albus
Lalb_Chr12g0203511 Lupinus albus
Lalb_Chr13g0296221 Lupinus albus
Lj1g0001228 Lotus japonicus
Lj4g0006175 Lotus japonicus
Lsat_1_v5_gn_1_14961 Lactuca sativa
Lsat_1_v5_gn_3_57881 Lactuca sativa
Lsat_1_v5_gn_4_137421 Lactuca sativa
Manes.02G136400 Manihot esculenta
Manes.12G143000 Manihot esculenta
MBI02_g18928_MAGBIO Magnolia biondii
MBI05_g00334_MAGBIO Magnolia biondii
MBI05_g35014_MAGBIO Magnolia biondii
MBI13_g08983_MAGBIO Magnolia biondii
MBI19_g20793_MAGBIO Magnolia biondii
MD01G1020100 Malus domestica
MD15G1332200 Malus domestica
Medtr2g035950 Medicago truncatula
Medtr2g035990 Medicago truncatula
Medtr2g036020 Medicago truncatula
Medtr3g094890 Medicago truncatula
Medtr3g094970 Medicago truncatula
Medtr8g091930 Medicago truncatula
MELO3C007484.2 Cucumis melo
MELO3C020960.2 Cucumis melo
Migut.H02440 Erythranthe guttata
Migut.L00070 Erythranthe guttata
MSTRG.2528 Avicennia marina
Nitab4.5_0000431g0200 Nicotiana tabacum
Nitab4.5_0000818g0190 Nicotiana tabacum
Nitab4.5_0004378g0020 Nicotiana tabacum
Nitab4.5_0004840g0020 Nicotiana tabacum
Nitab4.5_0005584g0030 Nicotiana tabacum
Nitab4.5_0007284g0050 Nicotiana tabacum
Nn1g05176 Nelumbo nucifera
Nn5g28892 Nelumbo nucifera
Nn7g36760 Nelumbo nucifera
Oeu028368.1 Olea europaea
Oeu032569.1 Olea europaea
Oeu056493.1 Olea europaea
Os03g0169900 Oryza sativa ssp. japonica
Os10g0405300 Oryza sativa ssp. japonica
Peaxi162Scf00133g01414 Petunia axillaris
Peaxi162Scf00359g00124 Petunia axillaris
PGR004G1449 Punica granatum
PGR119G1093 Punica granatum
PGSC0003DMG400016551 Solanum tuberosum
PGSC0003DMG400030107 Solanum tuberosum
Phvul.002G265100 Phaseolus vulgaris
Phvul.009G139200 Phaseolus vulgaris
Potri.001G273300 Populus trichocarpa
Potri.005G084700 Populus trichocarpa
Potri.007G080800 Populus trichocarpa
Potri.009G067600 Populus trichocarpa
Prupe.4G264200 Prunus persica
Prupe.6G172200 Prunus persica
Psat5g066200 Pisum sativum
Psat7g051000 Pisum sativum
PSO170G5757 Papaver somniferum
PSO541G0125 Papaver somniferum
PSO675G5205 Papaver somniferum
QL06p032044 Quercus lobata
RcHm_v2.0_Chr2g0116611 Rosa chinensis
Rhsim10G0149900 Rhododendron simsii
Rhsim13G0207800 Rhododendron simsii
Sabra07G0067800 Salix brachista
Sabra09G0050600 Salix brachista
Sabra16G0168400 Salix brachista
SalBow5G5446 Salvia bowleyana
SalBow6G4655 Salvia bowleyana
Sc03g0004380 Simmondsia chinensis
Sed0016172 Sechium edule
Sed0016541 Sechium edule
SEGI_22219 Sequoiadendron giganteum
SGA_v2.0_scaffold2G01294 Striga asiatica
SGA_v2.0_scaffold47G17704 Striga asiatica
SGA_v2.0_scaffold51G18757 Striga asiatica
SHI11691 Sapria himalayana
Solyc04g011910.3 Solanum lycopersicum
Solyc04g051820.4 Solanum lycopersicum
Solyc05g051710.4 Solanum lycopersicum
Sopen04g006050 Solanum pennellii
Sopen04g023160 Solanum pennellii
Sopen05g030180 Solanum pennellii
Sp2g27930 Schrenkiella parvula
Sp6g24940 Schrenkiella parvula
Sp6g33460 Schrenkiella parvula
TAR381G1174 Trochodendron aralioides
TAR625G0139 Trochodendron aralioides
TAR628G1039 Trochodendron aralioides
THA.LOC104799275 Tarenaya hassleriana
THA.LOC104819311 Tarenaya hassleriana
Thecc.01G113600 Theobroma cacao
Thecc.09G247400 Theobroma cacao
Thhalv10005264m.g Eutrema salsugineum
Thhalv10015061m.g Eutrema salsugineum
Thhalv10015114m.g Eutrema salsugineum
TPR.G2220 Trifolium pratense
TPR.G23761 Trifolium pratense
TWI53G0786 Tripterygium wilfordii
TWI74G1161 Tripterygium wilfordii
unitig_0.g480 Utricularia gibba
vmacro12899 Vaccinium macrocarpon
vmacro18635 Vaccinium macrocarpon
VMungo0251G0645 Vigna mungo
VMungo1309G1910 Vigna mungo
Zm00001eb048410 Zea mays
Zm00001eb223290 Zea mays
Zm00001eb402300 Zea mays

User provided reference genes

Program Settings