Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p33700 Brassica napus
A05p19490 Brassica napus
A05p27500 Brassica napus
A06p02360 Brassica napus
A08p02610 Brassica napus
Aa31LG10G3150 Aethionema arabicum
Aa31LG8G7880 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3526 Anthoceros agrestis
Actinidia00639 Actinidia chinensis
Actinidia21642 Actinidia chinensis
Actinidia21872 Actinidia chinensis
Actinidia24685 Actinidia chinensis
Actinidia29963 Actinidia chinensis
Actinidia31134 Actinidia chinensis
Actinidia38506 Actinidia chinensis
Actinidia38796 Actinidia chinensis
Ah.08g217660 Amaranthus hybridus
Ah.15g094440 Amaranthus hybridus
AL1G59540 Arabidopsis lyrata
AL3G35190 Arabidopsis lyrata
Aqoxy7G02892 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.562DT1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.67RSVA Arachis hypogaea
AT1G51630 Arabidopsis thaliana
AT3G21190 Arabidopsis thaliana
ATR0580G191 Amborella trichopoda
ATR0796G275 Amborella trichopoda
Atru.chr1.2700 Acer truncatum
AUR62001360 Chenopodium quinoa
AUR62025641 Chenopodium quinoa
BcaB01g01332 Brassica carinata
BcaB02g11260 Brassica carinata
BcaB04g17187 Brassica carinata
BcaB04g17598 Brassica carinata
BcaB04g20606 Brassica carinata
BcaB05g23411 Brassica carinata
BcaB06g26200 Brassica carinata
BcaB07g33615 Brassica carinata
BcaC01g01284 Brassica carinata
BcaC03g13631 Brassica carinata
BcaC05g28260 Brassica carinata
BcaC08g43324 Brassica carinata
BcaC08g43924 Brassica carinata
BcaC09g49055 Brassica carinata
BcaNung05298 Brassica carinata
BolC1t04254H Brassica oleracea
BolC3t21343H Brassica oleracea
BolC5t32982H Brassica oleracea
BolC6t35784H Brassica oleracea
BolC6t36472H Brassica oleracea
BraA01t03482Z Brassica rapa
BraA05t20853Z Brassica rapa
BraA05t21642Z Brassica rapa
BraA06t23443Z Brassica rapa
BraA08t32300Z Brassica rapa
C01p43070 Brassica napus
C03p90220 Brassica napus
C05p42640 Brassica napus
C06p06750 Brassica napus
C06p13160 Brassica napus
CAN.G308.4 Capsicum annuum
CAN.G403.5 Capsicum annuum
CAN.G790.22 Capsicum annuum
CANSAT01G2294 Cannabis sativa
CARHR041790 Cardamine hirsuta
CARHR097060 Cardamine hirsuta
Carub.0001s4048 Capsella rubella
Carub.0003s2115 Capsella rubella
Ca_02127_v3 Cicer arietinum L.
Ca_20492_v3 Cicer arietinum L.
Ca_20493_v3 Cicer arietinum L.
Cc00_g16710 Coffea canephora
Cc04_g00340 Coffea canephora
CDE02G0422 Ceratophyllum demersum
CDE05G1590 Ceratophyllum demersum
CDE05G2580 Ceratophyllum demersum
CDE06G1161 Ceratophyllum demersum
Cfa002132 Carpinus fangiana
Ciclev10025717m.g Citrus clementina
CiPaw.02G049500 Carya illinoinensis
ClCG09G001540 Citrullus lanatus
COL.COLO4_31199 Corchorus olitorius
Cpa.g.c34573 Carica papaya
Cpa.g.c36817 Carica papaya
Cpa.g.c45389 Carica papaya
Cpa.g.sc67.1 Carica papaya
CsaV3_7G033800 Cucumis sativus L.
CSS0015619 Camellia sinensis var. sinensis
CSS0048068 Camellia sinensis var. sinensis
DCAR_009476 Daucus carota
DCAR_022624 Daucus carota
Dinv20353 Davidia involucrata
Dinv41198 Davidia involucrata
Duzib160G0098 Durio zibethinus
Duzib192G0076 Durio zibethinus
Duzib192G0207 Durio zibethinus
Duzib235G0518 Durio zibethinus
ECA234G3665 Erigeron canadensis
EL10Ac7g18184 Beta vulgaris
Eucgr.C00086 Eucalyptus grandis
Eucgr.J03159 Eucalyptus grandis
FAN02G0290 Fragaria x ananassa
FAN05G0481 Fragaria x ananassa
FAN09G2111 Fragaria x ananassa
FAN14G1886 Fragaria x ananassa
FvH4_6g37210 Fragaria vesca
Glyma.07G004200 Glycine max
Glyma.08G222300 Glycine max
Glyma.09G061300 Glycine max
Glyma.13G372300 Glycine max
Glyma.15G001400 Glycine max
Glyma.15G167600 Glycine max
Gohir.A05G113900 Gossypium hirsutum
Gohir.A06G116000 Gossypium hirsutum
Gohir.D05G114300 Gossypium hirsutum
Gohir.D06G120800 Gossypium hirsutum
Gorai.009G118400 Gossypium raimondii
Gorai.010G141100 Gossypium raimondii
GSVIVG01016156001 Vitis vinifera
GSVIVG01029274001 Vitis vinifera
GSVIVG01029276001 Vitis vinifera
HanXRQChr02g0036421 Helianthus annuus
HanXRQChr03g0076431 Helianthus annuus
HanXRQChr10g0309011 Helianthus annuus
HanXRQChr10g0311481 Helianthus annuus
HanXRQChr12g0358461 Helianthus annuus
HanXRQChr12g0359911 Helianthus annuus
HanXRQChr17g0559741 Helianthus annuus
Haze_16307 Corylus avellana
Hma1.2p1_0517F.1_g170640 Hydrangea macrophylla
HPP92_015802 Vanilla planifolia
HPP92_015805 Vanilla planifolia
Hund05685 Selenicereus undatus
Hund16064 Selenicereus undatus
Hund18600 Selenicereus undatus
Lalb_Chr01g0011791 Lupinus albus
Lalb_Chr04g0264681 Lupinus albus
Lalb_Chr11g0074671 Lupinus albus
Lalb_Chr11g0074681 Lupinus albus
Lalb_Chr25g0278651 Lupinus albus
Lj3g0000116 Lotus japonicus
Lj3g0004186 Lotus japonicus
Lj5A24T53 Lonicera japonica
Lj6g0021655 Lotus japonicus
Lj9A541T93 Lonicera japonica
Lsat_1_v5_gn_4_88581 Lactuca sativa
Lsat_1_v5_gn_5_137401 Lactuca sativa
Lsat_1_v5_gn_5_84061 Lactuca sativa
Manes.03G081600 Manihot esculenta
Manes.16G044900 Manihot esculenta
Mapoly0015s0088 Marchantia polymorpha
MBI16_g09351_MAGBIO Magnolia biondii
MD09G1159500 Malus domestica
MD17G1145700 Malus domestica
Medtr2g038320 Medicago truncatula
Medtr4g008200 Medicago truncatula
MELO3C024292.2 Cucumis melo
Migut.I01178 Erythranthe guttata
Migut.J00778 Erythranthe guttata
Migut.L01871 Erythranthe guttata
Nitab4.5_0000028g0380 Nicotiana tabacum
Nitab4.5_0001691g0120 Nicotiana tabacum
Nitab4.5_0002661g0020 Nicotiana tabacum
Nitab4.5_0004695g0030 Nicotiana tabacum
Nitab4.5_0006044g0020 Nicotiana tabacum
Nitab4.5_0006661g0020 Nicotiana tabacum
Nitab4.5_0006661g0050 Nicotiana tabacum
Nitab4.5_0008628g0010 Nicotiana tabacum
Nn8g40660 Nelumbo nucifera
Oeu029605.1 Olea europaea
Oeu035454.1 Olea europaea
Oeu040348.1 Olea europaea
Oeu049648.1 Olea europaea
Os09g0498800 Oryza sativa ssp. japonica
Peaxi162Scf00038g02520 Petunia axillaris
Peaxi162Scf00046g00053 Petunia axillaris
PGR031G3136 Punica granatum
PGR102G3366 Punica granatum
PGR142G3279 Punica granatum
PGSC0003DMG400009163 Solanum tuberosum
PGSC0003DMG400019895 Solanum tuberosum
PGSC0003DMG400026516 Solanum tuberosum
Phvul.005G184800 Phaseolus vulgaris
Phvul.008G255300 Phaseolus vulgaris
Potri.008G008300 Populus trichocarpa
Potri.010G250600 Populus trichocarpa
Pp3c24_19390 Physcomitrium patens
Pp3c8_17070 Physcomitrium patens
Prupe.3G018500 Prunus persica
Psat1g143160 Pisum sativum
Psat7g261200 Pisum sativum
PSO063G6616 Papaver somniferum
PSO170G2344 Papaver somniferum
QL05p082724 Quercus lobata
QL05p082947 Quercus lobata
RcHm_v2.0_Chr2g0084881 Rosa chinensis
RcHm_v2.0_Chr2g0084891 Rosa chinensis
RcHm_v2.0_Chr2g0149901 Rosa chinensis
Rhsim03G0267800 Rhododendron simsii
Rhsim08G0248500 Rhododendron simsii
Rhsim12G0214500 Rhododendron simsii
Sabra08G0004800 Salix brachista
Sabra10G0194900 Salix brachista
Sc12g0011050 Simmondsia chinensis
Sed0003430 Sechium edule
SEGI_34296 Sequoiadendron giganteum
SGA_v2.0_scaffold112G31628 Striga asiatica
SGA_v2.0_scaffold122G33289 Striga asiatica
SGA_v2.0_scaffold31G12778 Striga asiatica
SGA_v2.0_scaffold71G24008 Striga asiatica
Solyc06g063240.3 Solanum lycopersicum
Solyc07g008290.4 Solanum lycopersicum
Sopen06g022690 Solanum pennellii
Sopen07g004180 Solanum pennellii
Sp1g38270 Schrenkiella parvula
Sp3g19170 Schrenkiella parvula
TAR383G0037 Trochodendron aralioides
TAR383G0397 Trochodendron aralioides
THA.LOC104817925 Tarenaya hassleriana
THA.LOC104821598 Tarenaya hassleriana
Thecc.06G064700 Theobroma cacao
Thhalv10011516m.g Eutrema salsugineum
Thhalv10020803m.g Eutrema salsugineum
TPR.G15702 Trifolium pratense
TPR.G2512 Trifolium pratense
TWI12G1381 Tripterygium wilfordii
TWI18G1347 Tripterygium wilfordii
unitig_32.g11003 Utricularia gibba
unitig_748.g8055 Utricularia gibba
unitig_899.g15191 Utricularia gibba
vmacro17060 Vaccinium macrocarpon
vmacro18758 Vaccinium macrocarpon
VMungo0647G2184 Vigna mungo
VMungo1080G0776 Vigna mungo
Zm00001eb102200 Zea mays
Zm00001eb233980 Zea mays
Zm00001eb274820 Zea mays
Zm00001eb317210 Zea mays
Zm00001eb372630 Zea mays

User provided reference genes

Program Settings