Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p01010 Brassica napus
A02p43910 Brassica napus
A08p20560 Brassica napus
A08p23140 Brassica napus
A10p27190 Brassica napus
Aa31LG3G16760 Aethionema arabicum
Aa31LG3G16770 Aethionema arabicum
Aa31LG6G15130 Aethionema arabicum
Actinidia01866 Actinidia chinensis
Actinidia02765 Actinidia chinensis
Actinidia06530 Actinidia chinensis
Actinidia33117 Actinidia chinensis
Ah.02g125790 Amaranthus hybridus
Ah.13g070700 Amaranthus hybridus
AL6G20910 Arabidopsis lyrata
AL7G12440 Arabidopsis lyrata
AL8G42940 Arabidopsis lyrata
Aqoxy6G00686 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9WC044 Arachis hypogaea
AT4G40080 Arabidopsis thaliana
AT5G10410 Arabidopsis thaliana
AT5G65370 Arabidopsis thaliana
Atru.chr13.1094 Acer truncatum
Atru.chr13.1103 Acer truncatum
Atru.chr3.1322 Acer truncatum
AUR62018989 Chenopodium quinoa
AUR62027189 Chenopodium quinoa
AUR62027831 Chenopodium quinoa
BcaB03g12300 Brassica carinata
BcaB03g12525 Brassica carinata
BcaB08g37110 Brassica carinata
BcaC01g00342 Brassica carinata
BcaC03g18331 Brassica carinata
BcaC04g19306 Brassica carinata
BcaC07g38269 Brassica carinata
BcaNung00940 Brassica carinata
BcaNung00942 Brassica carinata
BolC1t00111H Brassica oleracea
BolC3t20115H Brassica oleracea
BolC8t48695H Brassica oleracea
BolC9t59473H Brassica oleracea
BraA01t00099Z Brassica rapa
BraA02t09314Z Brassica rapa
BraA08t34012Z Brassica rapa
BraA08t34272Z Brassica rapa
BraA10t44769Z Brassica rapa
C01p01130 Brassica napus
C02p64060 Brassica napus
C03p78700 Brassica napus
C08p10160 Brassica napus
C09p67000 Brassica napus
CAN.G1173.10 Capsicum annuum
CAN.G905.1 Capsicum annuum
CANSAT01G2511 Cannabis sativa
CARHR202890 Cardamine hirsuta
CARHR246530 Cardamine hirsuta
CARHR246540 Cardamine hirsuta
CARHR279330 Cardamine hirsuta
CARHR279340 Cardamine hirsuta
Carub.0002s0123 Capsella rubella
Carub.0006s0888 Capsella rubella
Carub.0007s0207 Capsella rubella
Ca_16030_v3 Cicer arietinum L.
Ca_17774_v3 Cicer arietinum L.
Ca_25141_v3 Cicer arietinum L.
Ca_30634_v3 Cicer arietinum L.
Cc07_g14430 Coffea canephora
Cc10_g06560 Coffea canephora
CDE03G0472 Ceratophyllum demersum
Cfa001911 Carpinus fangiana
Cfa004368 Carpinus fangiana
Cfa016786 Carpinus fangiana
Cfa017907 Carpinus fangiana
Ciclev10001701m.g Citrus clementina
Ciclev10025941m.g Citrus clementina
CiPaw.01G048400 Carya illinoinensis
CiPaw.02G022400 Carya illinoinensis
CiPaw.15G044500 Carya illinoinensis
ClCG00G002660 Citrullus lanatus
ClCG08G011370 Citrullus lanatus
ClCG10G008340 Citrullus lanatus
COL.COLO4_11980 Corchorus olitorius
COL.COLO4_27312 Corchorus olitorius
Cpa.g.sc1686.1 Carica papaya
Cpa.g.sc55.58 Carica papaya
CsaV3_2G029960 Cucumis sativus L.
CsaV3_4G009090 Cucumis sativus L.
CSS0026892 Camellia sinensis var. sinensis
DCAR_003463 Daucus carota
DCAR_019302 Daucus carota
DCAR_019303 Daucus carota
Dinv13633 Davidia involucrata
Dinv20800 Davidia involucrata
Dinv42661 Davidia involucrata
Dinv44817 Davidia involucrata
Duzib116G0178 Durio zibethinus
Duzib147G0504 Durio zibethinus
Duzib187G0880 Durio zibethinus
Duzib264G0538 Durio zibethinus
EL10Ac1g01114 Beta vulgaris
EL10Ac6g14804 Beta vulgaris
Eucgr.B00050 Eucalyptus grandis
Eucgr.F00386 Eucalyptus grandis
Eucgr.H04733 Eucalyptus grandis
FAN08G3643 Fragaria x ananassa
FAN13G3035 Fragaria x ananassa
FAN18G1864 Fragaria x ananassa
FAN19G2862 Fragaria x ananassa
FAN23G2029 Fragaria x ananassa
FAN26G0322 Fragaria x ananassa
FAN28G2738 Fragaria x ananassa
FvH4_1g20100 Fragaria vesca
FvH4_5g36220 Fragaria vesca
Glyma.02G225100 Glycine max
Glyma.04G098000 Glycine max
Glyma.05G175100 Glycine max
Glyma.06G099700 Glycine max
Glyma.08G132400 Glycine max
Glyma.11G242900 Glycine max
Glyma.14G178700 Glycine max
Glyma.18G014200 Glycine max
Gohir.A05G222700 Gossypium hirsutum
Gohir.A06G032800 Gossypium hirsutum
Gohir.A10G087400 Gossypium hirsutum
Gohir.A11G051000 Gossypium hirsutum
Gohir.D05G225400 Gossypium hirsutum
Gohir.D06G033700 Gossypium hirsutum
Gohir.D10G100800 Gossypium hirsutum
Gohir.D11G054400 Gossypium hirsutum
Gorai.007G059500 Gossypium raimondii
Gorai.009G232900 Gossypium raimondii
Gorai.010G037200 Gossypium raimondii
Gorai.011G110500 Gossypium raimondii
GSVIVG01007072001 Vitis vinifera
HanXRQChr05g0163241 Helianthus annuus
HanXRQChr10g0314731 Helianthus annuus
HanXRQChr14g0445001 Helianthus annuus
Haze_15043 Corylus avellana
Haze_18244 Corylus avellana
Hma1.2p1_0045F.1_g026590 Hydrangea macrophylla
Lalb_Chr07g0185361 Lupinus albus
Lalb_Chr08g0242261 Lupinus albus
Lalb_Chr11g0065221 Lupinus albus
Lj1g0019043 Lotus japonicus
Lj2P538T22 Lonicera japonica
Lj4C94T8 Lonicera japonica
Lj4g0004924 Lotus japonicus
Lsat_1_v5_gn_2_65861 Lactuca sativa
Lsat_1_v5_gn_6_105921 Lactuca sativa
Manes.12G129001 Manihot esculenta
Manes.18G062900 Manihot esculenta
MBI06_g18771_MAGBIO Magnolia biondii
MD08G1190800 Malus domestica
MD15G1316600 Malus domestica
MD15G1378100 Malus domestica
Medtr3g086670 Medicago truncatula
Medtr3g099670 Medicago truncatula
Medtr8g089850 Medicago truncatula
MELO3C011054.2 Cucumis melo
MELO3C019004.2 Cucumis melo
Migut.H02319 Erythranthe guttata
MSTRG.23365 Avicennia marina
MSTRG.2589 Avicennia marina
Nitab4.5_0001078g0140 Nicotiana tabacum
Nitab4.5_0004715g0010 Nicotiana tabacum
Nitab4.5_0007011g0010 Nicotiana tabacum
Nn5g29964 Nelumbo nucifera
Oeu000873.1 Olea europaea
Oeu002153.1 Olea europaea
Oeu011241.1 Olea europaea
Oeu031107.1 Olea europaea
Oeu031415.1 Olea europaea
Os09g0468150 Oryza sativa ssp. japonica
Peaxi162Scf00139g00057 Petunia axillaris
Peaxi162Scf00237g00041 Petunia axillaris
PGR031G3382 Punica granatum
PGR042G3189 Punica granatum
PGR102G0243 Punica granatum
PGSC0003DMG400002134 Solanum tuberosum
PGSC0003DMG400016215 Solanum tuberosum
Phvul.001G254650 Phaseolus vulgaris
Phvul.001G254700 Phaseolus vulgaris
Phvul.002G260200 Phaseolus vulgaris
Phvul.008G178200 Phaseolus vulgaris
Phvul.009G034000 Phaseolus vulgaris
Potri.005G160800 Populus trichocarpa
Prupe.1G524700 Prunus persica
Prupe.6G195400 Prunus persica
Psat5g047840 Pisum sativum
Psat5g090920 Pisum sativum
Psat7g057640 Pisum sativum
PSO541G2212 Papaver somniferum
PSO675G6142 Papaver somniferum
QL02p002157 Quercus lobata
QL06p047786 Quercus lobata
RcHm_v2.0_Chr2g0112101 Rosa chinensis
RcHm_v2.0_Chr7g0238041 Rosa chinensis
Rhsim07G0206000 Rhododendron simsii
Rhsim07G0207000 Rhododendron simsii
Rhsim10G0169700 Rhododendron simsii
Sabra05G0121900 Salix brachista
SalBow3G2404 Salvia bowleyana
SalBow3G3987 Salvia bowleyana
Sc01g0000910 Simmondsia chinensis
Sc03g0000200 Simmondsia chinensis
Sc03g0000230 Simmondsia chinensis
Sed0008018 Sechium edule
Sed0014089 Sechium edule
SGA_v2.0_scaffold195G40823 Striga asiatica
Solyc04g074830.1 Solanum lycopersicum
Solyc11g010370.1 Solanum lycopersicum
Sopen00g013050 Solanum pennellii
Sopen11g005150 Solanum pennellii
Sp2g28450 Schrenkiella parvula
Sp6g33040 Schrenkiella parvula
Sp7g35770 Schrenkiella parvula
TAR628G0527 Trochodendron aralioides
THA.LOC104798791 Tarenaya hassleriana
THA.LOC104801687 Tarenaya hassleriana
THA.LOC104824904 Tarenaya hassleriana
Thecc.01G093800 Theobroma cacao
Thecc.08G064800 Theobroma cacao
Thhalv10005617m.g Eutrema salsugineum
Thhalv10013869m.g Eutrema salsugineum
Thhalv10025543m.g Eutrema salsugineum
TPR.G34945 Trifolium pratense
TPR.G6226 Trifolium pratense
TPR.G6366 Trifolium pratense
TWI53G0860 Tripterygium wilfordii
TWI56G0301 Tripterygium wilfordii
TWI74G0173 Tripterygium wilfordii
vmacro04702 Vaccinium macrocarpon
vmacro22071 Vaccinium macrocarpon
vmacro22669 Vaccinium macrocarpon
VMungo0251G2032 Vigna mungo
VMungo0647G1937 Vigna mungo
VMungo1309G3157 Vigna mungo
VMungo1383G0194 Vigna mungo
VMungo1383G0649 Vigna mungo
Zm00001eb315580 Zea mays

User provided reference genes

Program Settings