Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p38050 Brassica napus
A02p38150 Brassica napus
A03p34800 Brassica napus
A05p41350 Brassica napus
Aa31LG11G7980 Aethionema arabicum
Aa31LG5G17270 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3429 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1762 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2043 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2044 Anthoceros agrestis
Actinidia13366 Actinidia chinensis
Actinidia14263 Actinidia chinensis
Actinidia15592 Actinidia chinensis
Actinidia40360 Actinidia chinensis
Ah.04g154690 Amaranthus hybridus
Ah.13g072010 Amaranthus hybridus
AL8G23020 Arabidopsis lyrata
Aqoxy2G02778 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.H4Q3P5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M9PALT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MU0822 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NWW8JA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SIM9W4 Arachis hypogaea
AT3G06670 Arabidopsis thaliana
AT5G49390 Arabidopsis thaliana
ATR0693G162 Amborella trichopoda
Atru.chr4.2987 Acer truncatum
AUR62016132 Chenopodium quinoa
AUR62041405 Chenopodium quinoa
BcaB07g34153 Brassica carinata
BcaC03g17718 Brassica carinata
BcaC03g17729 Brassica carinata
BcaC05g30551 Brassica carinata
BcaC09g47913 Brassica carinata
BNapus_Darmor_BZH_scaffold_117p00020 Brassica napus
BolC1t05592H Brassica oleracea
BolC2t11798H Brassica oleracea
BolC3t16509H Brassica oleracea
BolC5t34712H Brassica oleracea
BraA01t04421Z Brassica rapa
BraA02t08787Z Brassica rapa
BraA03t12661Z Brassica rapa
BraA05t22857Z Brassica rapa
C02p57280 Brassica napus
C02p57380 Brassica napus
C03p42390 Brassica napus
C05p60580 Brassica napus
CAN.G197.5 Capsicum annuum
CAN.G197.6 Capsicum annuum
CAN.G484.57 Capsicum annuum
CANSAT78G1319 Cannabis sativa
CARHR081270 Cardamine hirsuta
CARHR182140 Cardamine hirsuta
Carub.0003s0622 Capsella rubella
Carub.0008s0927 Capsella rubella
Ca_01873_v3 Cicer arietinum L.
Ca_21452_v3 Cicer arietinum L.
CBR_g8250 Chara braunii
Cc03_g01010 Coffea canephora
Cc03_g01020 Coffea canephora
CDE05G2358 Ceratophyllum demersum
CDE11G0455 Ceratophyllum demersum
Cfa022171 Carpinus fangiana
Ciclev10004319m.g Citrus clementina
CiPaw.01G140100 Carya illinoinensis
CiPaw.01G140300 Carya illinoinensis
CiPaw.02G076000 Carya illinoinensis
ClCG05G006450 Citrullus lanatus
ClCG06G004660 Citrullus lanatus
COL.COLO4_34651 Corchorus olitorius
Cpa.g.c38519 Carica papaya
Cpa.g.sc9.90 Carica papaya
Cpa.g.sc9.91 Carica papaya
Cre17.g701300 Chlamydomonas reinhardtii
CsaV3_3G015100 Cucumis sativus L.
CsaV3_6G022390 Cucumis sativus L.
CSS0000431 Camellia sinensis var. sinensis
CSS0003682 Camellia sinensis var. sinensis
CSS0006176 Camellia sinensis var. sinensis
CSS0023058 Camellia sinensis var. sinensis
DCAR_002505 Daucus carota
DCAR_023346 Daucus carota
Dinv15159 Davidia involucrata
Dinv15196 Davidia involucrata
Dinv44305 Davidia involucrata
Duzib052G0636 Durio zibethinus
Duzib151G0543 Durio zibethinus
Duzib212G0980 Durio zibethinus
ECA246G3006 Erigeron canadensis
ECA248G1285 Erigeron canadensis
EL10Ac3g05461 Beta vulgaris
Eucgr.A00349 Eucalyptus grandis
FAN07G2008 Fragaria x ananassa
FAN12G1533 Fragaria x ananassa
FAN12G2752 Fragaria x ananassa
FAN12G3060 Fragaria x ananassa
FAN27G0072 Fragaria x ananassa
FvH4_4g19450 Fragaria vesca
Glyma.07G241500 Glycine max
Glyma.09G037900 Glycine max
Glyma.14G089006 Glycine max
Glyma.15G143000 Glycine max
Glyma.17G032400 Glycine max
Gohir.A02G053800 Gossypium hirsutum
Gohir.A04G075750 Gossypium hirsutum
Gohir.A04G088700 Gossypium hirsutum
Gohir.A07G163250 Gossypium hirsutum
Gohir.A08G154600 Gossypium hirsutum
Gohir.A09G235300 Gossypium hirsutum
Gohir.A10G171100 Gossypium hirsutum
Gohir.D01G120132 Gossypium hirsutum
Gohir.D02G058450 Gossypium hirsutum
Gohir.D02G058501 Gossypium hirsutum
Gohir.D06G092933 Gossypium hirsutum
Gohir.D09G236100 Gossypium hirsutum
Gohir.D10G178200 Gossypium hirsutum
Gorai.002G146800 Gossypium raimondii
Gorai.005G066100 Gossypium raimondii
Gorai.006G259200 Gossypium raimondii
Gorai.010G107500 Gossypium raimondii
Gorai.011G199200 Gossypium raimondii
GSVIVG01035021001 Vitis vinifera
HanXRQChr01g0029941 Helianthus annuus
HanXRQChr05g0145761 Helianthus annuus
Haze_01273 Corylus avellana
Haze_01274 Corylus avellana
Hma1.2p1_0013F.1_g008750 Hydrangea macrophylla
HPP92_010608 Vanilla planifolia
HPP92_010707 Vanilla planifolia
Hund03112 Selenicereus undatus
Hund03113 Selenicereus undatus
Hund11960 Selenicereus undatus
Hund28819 Selenicereus undatus
Hund28821 Selenicereus undatus
Hund29702 Selenicereus undatus
Hund29711 Selenicereus undatus
Lalb_Chr13g0298401 Lupinus albus
Lalb_Chr18g0058841 Lupinus albus
Lj3A829G36 Lonicera japonica
Lj4g0024803 Lotus japonicus
Lj6C689G0 Lonicera japonica
Lj6g0011835 Lotus japonicus
Lsat_1_v5_gn_1_109660 Lactuca sativa
Lsat_1_v5_gn_1_43901 Lactuca sativa
Lsat_1_v5_gn_5_37960 Lactuca sativa
Lsat_1_v5_gn_6_114340 Lactuca sativa
Manes.03G202600 Manihot esculenta
Manes.09G045800 Manihot esculenta
Manes.15G005600 Manihot esculenta
Mapoly0068s0104 Marchantia polymorpha
MBI18_g31669_MAGBIO Magnolia biondii
MCO03G494 Micromonas commoda
MD13G1156500 Malus domestica
MD16G1157400 Malus domestica
Medtr2g034560 Medicago truncatula
Medtr4g121890 Medicago truncatula
MELO3C006705.2 Cucumis melo
MELO3C021275.2 Cucumis melo
Migut.G00089 Erythranthe guttata
Migut.N00050 Erythranthe guttata
MSTRG.10143 Avicennia marina
MSTRG.24815 Avicennia marina
Nitab4.5_0000570g0380 Nicotiana tabacum
Nitab4.5_0002150g0230 Nicotiana tabacum
Nitab4.5_0002150g0240 Nicotiana tabacum
Nn3g21676 Nelumbo nucifera
Oeu032025.1 Olea europaea
Oeu037314.4 Olea europaea
Oeu046569.1 Olea europaea
Os01g0337600 Oryza sativa ssp. japonica
Os05g0156800 Oryza sativa ssp. japonica
Peaxi162Scf00017g00815 Petunia axillaris
Peaxi162Scf00065g00111 Petunia axillaris
PGR031G1109 Punica granatum
Phvul.003G112400 Phaseolus vulgaris
Phvul.009G255000 Phaseolus vulgaris
Potri.008G107300 Populus trichocarpa
Potri.010G142200 Populus trichocarpa
Pp3c12_11410 Physcomitrium patens
Pp3c26_3230 Physcomitrium patens
Pp3c3_34670 Physcomitrium patens
Pp3c4_23450 Physcomitrium patens
Pp3c4_6900 Physcomitrium patens
Pp3c8_1590 Physcomitrium patens
Pp3c8_1595 Physcomitrium patens
PRCOL_00003128 Prasinoderma coloniale
Prupe.1G122300 Prunus persica
Psat4g023560 Pisum sativum
PSO170G6497 Papaver somniferum
PSO210G6629 Papaver somniferum
PSO357G0049 Papaver somniferum
PSO761G0313 Papaver somniferum
QL06p011601 Quercus lobata
RcHm_v2.0_Chr4g0424501 Rosa chinensis
Rhsim02G0039600 Rhododendron simsii
Rhsim04G0234000 Rhododendron simsii
Sabra08G0081200 Salix brachista
Sabra08G0081300 Salix brachista
Sabra10G0109900 Salix brachista
SalBow8G0942 Salvia bowleyana
SalBow8G3917 Salvia bowleyana
SalBow8G4286 Salvia bowleyana
Sc25g0003400 Simmondsia chinensis
Sed0001138 Sechium edule
Sed0003912 Sechium edule
Sed0015193 Sechium edule
Sed0017906 Sechium edule
SEGI_28809 Sequoiadendron giganteum
SEGI_35329 Sequoiadendron giganteum
SEGI_37265 Sequoiadendron giganteum
SGA_v2.0_scaffold67G22576 Striga asiatica
SHI00172 Sapria himalayana
SMO174G0063 Selaginella moellendorffii
Solyc01g060080.4 Solanum lycopersicum
Solyc01g060090.1 Solanum lycopersicum
Solyc12g099320.2 Solanum lycopersicum
Sopen01g026260 Solanum pennellii
Sopen12g034000 Solanum pennellii
Sp2g19730 Schrenkiella parvula
Sp3g05660 Schrenkiella parvula
SpUn0021_0120 Schrenkiella parvula
TAR362G0531 Trochodendron aralioides
TAR633G1104 Trochodendron aralioides
THA.LOC104802704 Tarenaya hassleriana
THA.LOC104807976 Tarenaya hassleriana
THA.LOC104818893 Tarenaya hassleriana
THA.LOC104827092 Tarenaya hassleriana
Thecc.04G297200 Theobroma cacao
Thhalv10005268m.g Eutrema salsugineum
Thhalv10020042m.g Eutrema salsugineum
TPR.G16858 Trifolium pratense
TPR.G20331 Trifolium pratense
TPR.G5761 Trifolium pratense
TWI09G0948 Tripterygium wilfordii
TWI53G0399 Tripterygium wilfordii
TWI73G1014 Tripterygium wilfordii
unitig_0.g2585 Utricularia gibba
unitig_748.g8705 Utricularia gibba
unitig_88.g27704 Utricularia gibba
vmacro08064 Vaccinium macrocarpon
VMungo1309G1536 Vigna mungo
Zm00001eb131230 Zea mays
Zm00001eb282620 Zea mays
Zm00001eb282630 Zea mays
Zm00001eb282640 Zea mays
Zm00001eb340940 Zea mays

User provided reference genes

Program Settings