Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p34170 Brassica napus
A09p62610 Brassica napus
A09p62680 Brassica napus
Aa31LG1G1150 Aethionema arabicum
Aa31LG4G12060 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3602 Anthoceros agrestis
Actinidia08095 Actinidia chinensis
Actinidia27125 Actinidia chinensis
Actinidia28378 Actinidia chinensis
Actinidia30681 Actinidia chinensis
Ah.03g133790 Amaranthus hybridus
Ah.06g194660 Amaranthus hybridus
AL1G25610 Arabidopsis lyrata
AL2G26360 Arabidopsis lyrata
Aqoxy3G00360 Aquilegia oxysepala
Aqoxy4G00538 Aquilegia oxysepala
Aqoxy5G00171 Aquilegia oxysepala
Aqoxy5G03551 Aquilegia oxysepala
Aqoxy6G03046 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.39MIH8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PKF7IH Arachis hypogaea
AT1G13810 Arabidopsis thaliana
AT1G67660 Arabidopsis thaliana
ATR0322G049 Amborella trichopoda
ATR0581G001 Amborella trichopoda
ATR0589G089 Amborella trichopoda
ATR0796G187 Amborella trichopoda
ATR1132G069 Amborella trichopoda
Atru.chr11.2228 Acer truncatum
Atru.chr12.1833 Acer truncatum
AUR62003128 Chenopodium quinoa
AUR62005562 Chenopodium quinoa
AUR62007947 Chenopodium quinoa
AUR62024172 Chenopodium quinoa
AUR62035326 Chenopodium quinoa
BcaB03g13121 Brassica carinata
BcaB03g15179 Brassica carinata
BcaB08g34330 Brassica carinata
BcaB08g34346 Brassica carinata
BcaC07g41620 Brassica carinata
BcaC08g46174 Brassica carinata
BolC6t39179H Brassica oleracea
BolC8t52173H Brassica oleracea
BraA07t31042Z Brassica rapa
BraA07t31046Z Brassica rapa
BraA09t41624Z Brassica rapa
BraA09t41632Z Brassica rapa
C06p42600 Brassica napus
C08p46170 Brassica napus
C08p46240 Brassica napus
CAN.G128.97 Capsicum annuum
CANSAT01G1939 Cannabis sativa
CARHR014200 Cardamine hirsuta
CARHR060260 Cardamine hirsuta
Carub.0001s1353 Capsella rubella
Carub.0002s1404 Capsella rubella
Ca_02413_v3 Cicer arietinum L.
Ca_18068_v3 Cicer arietinum L.
CBR_g32038 Chara braunii
Cc00_g24470 Coffea canephora
Cc02_g30400 Coffea canephora
Cc09_g02960 Coffea canephora
CDE08G0914 Ceratophyllum demersum
CDE10G0013 Ceratophyllum demersum
Cfa015557 Carpinus fangiana
Ciclev10031836m.g Citrus clementina
Ciclev10031987m.g Citrus clementina
CiPaw.05G173300 Carya illinoinensis
CiPaw.05G211800 Carya illinoinensis
CiPaw.05G212100 Carya illinoinensis
ClCG08G017360 Citrullus lanatus
ClCG09G009970 Citrullus lanatus
COL.COLO4_23605 Corchorus olitorius
COL.COLO4_32813 Corchorus olitorius
Cpa.g.sc43.147 Carica papaya
CsaV3_2G025260 Cucumis sativus L.
CsaV3_6G036500 Cucumis sativus L.
CsaV3_7G024650 Cucumis sativus L.
CSS0015410 Camellia sinensis var. sinensis
CSS0023749 Camellia sinensis var. sinensis
CSS0026055 Camellia sinensis var. sinensis
CSS0046212 Camellia sinensis var. sinensis
Dinv11001 Davidia involucrata
Dinv15377 Davidia involucrata
Dinv18167 Davidia involucrata
Duzib106G0873 Durio zibethinus
Duzib177G0250 Durio zibethinus
Duzib248G0802 Durio zibethinus
Duzib251G0708 Durio zibethinus
Duzib268G0946 Durio zibethinus
ECA233G4542 Erigeron canadensis
ECA233G6210 Erigeron canadensis
ECA246G3629 Erigeron canadensis
EL10Ac6g13423 Beta vulgaris
Eucgr.F04338 Eucalyptus grandis
Eucgr.H04678 Eucalyptus grandis
FAN07G2857 Fragaria x ananassa
FAN15G1194 Fragaria x ananassa
FAN17G0705 Fragaria x ananassa
FAN22G1126 Fragaria x ananassa
FAN24G1217 Fragaria x ananassa
FAN24G2271 Fragaria x ananassa
FAN27G0321 Fragaria x ananassa
FAN27G0646 Fragaria x ananassa
FAN27G0669 Fragaria x ananassa
FAN27G2724 Fragaria x ananassa
FvH4_2g14912 Fragaria vesca
FvH4_2g20261 Fragaria vesca
FvH4_4g24601 Fragaria vesca
Glyma.02G215200 Glycine max
Glyma.05G144902 Glycine max
Glyma.08G101400 Glycine max
Glyma.14G182500 Glycine max
Gohir.A05G126800 Gossypium hirsutum
Gohir.A06G000500 Gossypium hirsutum
Gohir.A06G192800 Gossypium hirsutum
Gohir.A13G157600 Gossypium hirsutum
Gohir.A13G157800 Gossypium hirsutum
Gohir.D05G127700 Gossypium hirsutum
Gohir.D06G200700 Gossypium hirsutum
Gohir.D13G162700 Gossypium hirsutum
Gorai.009G131900 Gossypium raimondii
Gorai.010G234200 Gossypium raimondii
Gorai.013G184900 Gossypium raimondii
GSVIVG01010323001 Vitis vinifera
GSVIVG01013860001 Vitis vinifera
GSVIVG01024282001 Vitis vinifera
HanXRQChr08g0225791 Helianthus annuus
HanXRQChr12g0372241 Helianthus annuus
HanXRQChr17g0540051 Helianthus annuus
Haze_00362 Corylus avellana
Haze_12336 Corylus avellana
Hma1.2p1_0079F.1_g041670 Hydrangea macrophylla
Hma1.2p1_0316F.1_g122940 Hydrangea macrophylla
HPP92_024690 Vanilla planifolia
Hund25194 Selenicereus undatus
Lalb_Chr02g0154041 Lupinus albus
Lalb_Chr13g0294111 Lupinus albus
Lalb_Chr15g0083651 Lupinus albus
Lalb_Chr16g0391031 Lupinus albus
Lj2C45T13 Lonicera japonica
Lj4g0020754 Lotus japonicus
Lj6g0027678 Lotus japonicus
Lj6P820T73 Lonicera japonica
Lsat_1_v5_gn_8_151280 Lactuca sativa
Lsat_1_v5_gn_8_4000 Lactuca sativa
Lsat_1_v5_gn_8_5120 Lactuca sativa
Manes.12G016100 Manihot esculenta
Manes.13G014700 Manihot esculenta
Manes.13G089600 Manihot esculenta
Mapoly0001s0317 Marchantia polymorpha
MBI11_g42238_MAGBIO Magnolia biondii
MBI19_g09319_MAGBIO Magnolia biondii
MCO10G341 Micromonas commoda
MCO16G525 Micromonas commoda
MD13G1109900 Malus domestica
MD14G1083500 Malus domestica
MD16G1109800 Malus domestica
Medtr2g088950 Medicago truncatula
Medtr2g437670 Medicago truncatula
Medtr8g080020 Medicago truncatula
MELO3C010723.2 Cucumis melo
MELO3C019802.2 Cucumis melo
Migut.B01022 Erythranthe guttata
Migut.K00686 Erythranthe guttata
MSTRG.17040 Avicennia marina
MSTRG.17512 Avicennia marina
MSTRG.529 Avicennia marina
MSTRG.7969 Avicennia marina
Nitab4.5_0000061g0020 Nicotiana tabacum
Nitab4.5_0000233g0160 Nicotiana tabacum
Nitab4.5_0002027g0220 Nicotiana tabacum
Nitab4.5_0002088g0020 Nicotiana tabacum
Nitab4.5_0004081g0010 Nicotiana tabacum
Nn3g16562 Nelumbo nucifera
Nn3g19222 Nelumbo nucifera
Oeu010343.1 Olea europaea
Oeu020316.1 Olea europaea
Oeu041692.1 Olea europaea
Os04g0485700 Oryza sativa ssp. japonica
Os08g0236700 Oryza sativa ssp. japonica
Peaxi162Scf00108g00093 Petunia axillaris
PGR004G1872 Punica granatum
PGR042G1540 Punica granatum
PGSC0003DMG400028199 Solanum tuberosum
Phvul.002G176700 Phaseolus vulgaris
Phvul.008G182600 Phaseolus vulgaris
Potri.008G039800 Populus trichocarpa
Potri.010G054800 Populus trichocarpa
Potri.010G222500 Populus trichocarpa
Pp3c2_28950 Physcomitrium patens
PRCOL_00002975 Prasinoderma coloniale
Prupe.1G235100 Prunus persica
Prupe.3G017000 Prunus persica
Prupe.4G287100 Prunus persica
Psat1g151480 Pisum sativum
Psat7g079200 Pisum sativum
PSO063G1618 Papaver somniferum
QL03p055307 Quercus lobata
QL09p020509 Quercus lobata
RcHm_v2.0_Chr4g0431611 Rosa chinensis
RcHm_v2.0_Chr6g0277511 Rosa chinensis
RcHm_v2.0_Chr6g0286051 Rosa chinensis
Rhsim09G0008000 Rhododendron simsii
Rhsim12G0035600 Rhododendron simsii
Sabra08G0027200 Salix brachista
Sabra10G0050100 Salix brachista
Sc04g0009900 Simmondsia chinensis
Sc17g0000170 Simmondsia chinensis
Sed0010507 Sechium edule
Sed0025330 Sechium edule
Sed0027805 Sechium edule
SEGI_08165 Sequoiadendron giganteum
SEGI_30742 Sequoiadendron giganteum
SGA_v2.0_scaffold100G29670 Striga asiatica
SGA_v2.0_scaffold12G06165 Striga asiatica
SGA_v2.0_scaffold184G40012 Striga asiatica
SGA_v2.0_scaffold22G09720 Striga asiatica
SGA_v2.0_scaffold332G48927 Striga asiatica
SHI17923 Sapria himalayana
SMO165G0056 Selaginella moellendorffii
SMO364G0942 Selaginella moellendorffii
Solyc10g081050.1 Solanum lycopersicum
Sopen10g031570 Solanum pennellii
Sp1g12020 Schrenkiella parvula
Sp1g12130 Schrenkiella parvula
Sp5g22660 Schrenkiella parvula
TAR622G0786 Trochodendron aralioides
TAR629G1550 Trochodendron aralioides
TAR629G2691 Trochodendron aralioides
TAR629G2940 Trochodendron aralioides
THA.LOC104799401 Tarenaya hassleriana
THA.LOC104807694 Tarenaya hassleriana
Thecc.02G272900 Theobroma cacao
Thecc.05G224000 Theobroma cacao
Thhalv10008303m.g Eutrema salsugineum
Thhalv10008304m.g Eutrema salsugineum
Thhalv10018787m.g Eutrema salsugineum
TPR.G17072 Trifolium pratense
TPR.G30926 Trifolium pratense
TWI36G0807 Tripterygium wilfordii
TWI75G0092 Tripterygium wilfordii
unitig_747.g21135 Utricularia gibba
vmacro00685 Vaccinium macrocarpon
VMungo0251G3304 Vigna mungo
Zm00001eb079210 Zea mays
Zm00001eb425180 Zea mays

User provided reference genes

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