Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p34250 Brassica napus
Aa31LG11G2470 Aethionema arabicum
Aa31LG5G16080 Aethionema arabicum
Actinidia16840 Actinidia chinensis
Actinidia35054 Actinidia chinensis
Actinidia35537 Actinidia chinensis
Ah.02g114320 Amaranthus hybridus
Ah.06g189100 Amaranthus hybridus
AL3G16320 Arabidopsis lyrata
Aqoxy3G03763 Aquilegia oxysepala
Aqoxy5G02587 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.PTHF6B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X25DG1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XBA6K2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y3MCKA Arachis hypogaea
AT3G05670 Arabidopsis thaliana
ATR0691G105 Amborella trichopoda
ATR0706G010 Amborella trichopoda
Atru.chr2.128 Acer truncatum
Atru.chr2.129 Acer truncatum
Atru.chr9.609 Acer truncatum
AUR62000702 Chenopodium quinoa
AUR62005253 Chenopodium quinoa
AUR62032144 Chenopodium quinoa
AUR62039663 Chenopodium quinoa
BcaB04g19250 Brassica carinata
BcaB05g24568 Brassica carinata
BcaC05g29788 Brassica carinata
BcaC05g30098 Brassica carinata
BcaC05g30102 Brassica carinata
BolC3t16446H Brassica oleracea
BolC5t34812H Brassica oleracea
BraA03t12599Z Brassica rapa
BraA05t22950Z Brassica rapa
C03p41660 Brassica napus
CAN.G1273.19 Capsicum annuum
CAN.G587.64 Capsicum annuum
CANSAT54G2942 Cannabis sativa
CARHR080110 Cardamine hirsuta
Carub.0003s0499 Capsella rubella
Ca_09324_v3 Cicer arietinum L.
Ca_21750_v3 Cicer arietinum L.
CBR_g45172 Chara braunii
CBR_g49719 Chara braunii
Cc02_g34580 Coffea canephora
Cc04_g08170 Coffea canephora
CDE02G0549 Ceratophyllum demersum
CDE02G1860 Ceratophyllum demersum
Cfa006676 Carpinus fangiana
Cfa017736 Carpinus fangiana
Cfa022188 Carpinus fangiana
Ciclev10000286m.g Citrus clementina
Ciclev10019179m.g Citrus clementina
CiPaw.07G026000 Carya illinoinensis
CiPaw.08G158100 Carya illinoinensis
CiPaw.15G114900 Carya illinoinensis
CiPaw.15G115500 Carya illinoinensis
ClCG03G017550 Citrullus lanatus
ClCG04G011520 Citrullus lanatus
COL.COLO4_28842 Corchorus olitorius
COL.COLO4_28843 Corchorus olitorius
COL.COLO4_28844 Corchorus olitorius
COL.COLO4_34182 Corchorus olitorius
Cpa.g.sc3.222 Carica papaya
Cpa.g.sc3064.2 Carica papaya
Cre13.g592100 Chlamydomonas reinhardtii
CsaV3_1G006290 Cucumis sativus L.
CsaV3_1G038480 Cucumis sativus L.
CSS0020816 Camellia sinensis var. sinensis
CSS0036923 Camellia sinensis var. sinensis
CSS0041567 Camellia sinensis var. sinensis
DCAR_005407 Daucus carota
DCAR_010179 Daucus carota
DCAR_010180 Daucus carota
DCAR_010181 Daucus carota
DCAR_010182 Daucus carota
DCAR_010183 Daucus carota
DCAR_010184 Daucus carota
DCAR_014019 Daucus carota
Dinv24414 Davidia involucrata
Dinv30857 Davidia involucrata
Dinv38632 Davidia involucrata
Duzib068G0984 Durio zibethinus
Duzib106G1156 Durio zibethinus
Duzib128G0304 Durio zibethinus
Duzib177G0806 Durio zibethinus
ECA232G3190 Erigeron canadensis
ECA236G2114 Erigeron canadensis
EL10Ac4g09839 Beta vulgaris
EL10Ac5g11197 Beta vulgaris
Eucgr.B00646 Eucalyptus grandis
Eucgr.H03278 Eucalyptus grandis
FAN02G3774 Fragaria x ananassa
FAN05G2011 Fragaria x ananassa
FAN08G3543 Fragaria x ananassa
FAN09G2847 Fragaria x ananassa
FAN09G4433 Fragaria x ananassa
FAN13G0702 Fragaria x ananassa
FAN14G2831 Fragaria x ananassa
FAN18G0550 Fragaria x ananassa
FvH4_5g13310 Fragaria vesca
FvH4_6g07080 Fragaria vesca
Glyma.05G017700 Glycine max
Glyma.10G149400 Glycine max
Glyma.17G082300 Glycine max
Glyma.20G238800 Glycine max
Gohir.A07G058100 Gossypium hirsutum
Gohir.A11G271100 Gossypium hirsutum
Gohir.A13G111200 Gossypium hirsutum
Gohir.A13G174880 Gossypium hirsutum
Gohir.D07G062900 Gossypium hirsutum
Gohir.D11G281300 Gossypium hirsutum
Gohir.D13G113700 Gossypium hirsutum
Gohir.D13G180700 Gossypium hirsutum
Gorai.001G066400 Gossypium raimondii
Gorai.007G303700 Gossypium raimondii
Gorai.013G127600 Gossypium raimondii
Gorai.013G206200 Gossypium raimondii
GSVIVG01008167001 Vitis vinifera
GSVIVG01031198001 Vitis vinifera
HanXRQChr01g0011791 Helianthus annuus
HanXRQChr09g0270521 Helianthus annuus
HanXRQChr15g0466321 Helianthus annuus
Haze_04095 Corylus avellana
Haze_18513 Corylus avellana
Haze_18515 Corylus avellana
HPP92_001068 Vanilla planifolia
HPP92_006898 Vanilla planifolia
HPP92_018239 Vanilla planifolia
Hund07125 Selenicereus undatus
Hund09971 Selenicereus undatus
Hund21731 Selenicereus undatus
Lalb_Chr06g0167561 Lupinus albus
Lalb_Chr12g0197411 Lupinus albus
Lalb_Chr15g0077561 Lupinus albus
Lalb_Chr15g0077581 Lupinus albus
Lalb_Chr18g0045961 Lupinus albus
Lj1g0017235 Lotus japonicus
Lj4g0005091 Lotus japonicus
Lj5A342T76 Lonicera japonica
Lj5g0008592 Lotus japonicus
Lj9A204T41 Lonicera japonica
Lj9C437G7 Lonicera japonica
Lsat_1_v5_gn_4_112441 Lactuca sativa
Manes.06G080200 Manihot esculenta
Manes.08G113500 Manihot esculenta
Manes.08G113700 Manihot esculenta
Mapoly0001s0127 Marchantia polymorpha
MBI01_g14097_MAGBIO Magnolia biondii
MBI15_g25910_MAGBIO Magnolia biondii
MBI18_g05915_MAGBIO Magnolia biondii
MBI19_g38161_MAGBIO Magnolia biondii
MCO04G095 Micromonas commoda
MD04G1196300 Malus domestica
MD06G1206300 Malus domestica
MD12G1209300 Malus domestica
Medtr4g110090 Medicago truncatula
Medtr7g112410 Medicago truncatula
MELO3C002058.2 Cucumis melo
MELO3C015274.2 Cucumis melo
Migut.B00983 Erythranthe guttata
Migut.D01494 Erythranthe guttata
Nitab4.5_0001971g0010 Nicotiana tabacum
Nitab4.5_0001971g0040 Nicotiana tabacum
Nitab4.5_0002449g0110 Nicotiana tabacum
Nitab4.5_0002715g0130 Nicotiana tabacum
Nitab4.5_0004190g0020 Nicotiana tabacum
Nn4g23559 Nelumbo nucifera
Nn4g25695 Nelumbo nucifera
Oeu012139.1 Olea europaea
Oeu020897.2 Olea europaea
Oeu038927.1 Olea europaea
Oeu057225.1 Olea europaea
Oeu057226.1 Olea europaea
Os03g0302200 Oryza sativa ssp. japonica
Os06g0283200 Oryza sativa ssp. japonica
Os07g0690300 Oryza sativa ssp. japonica
Peaxi162Scf00013g00839 Petunia axillaris
Peaxi162Scf00073g00011 Petunia axillaris
PGR031G0203 Punica granatum
PGR083G0612 Punica granatum
PGSC0003DMG400004060 Solanum tuberosum
PGSC0003DMG400024731 Solanum tuberosum
Phvul.003G181800 Phaseolus vulgaris
Phvul.007G199500 Phaseolus vulgaris
Potri.005G021000 Populus trichocarpa
Potri.013G011400 Populus trichocarpa
Pp3c1_8100 Physcomitrium patens
Pp3c2_37790 Physcomitrium patens
Prupe.5G210700 Prunus persica
Prupe.6G316500 Prunus persica
Psat3g013760 Pisum sativum
Psat4g045320 Pisum sativum
PSO063G1707 Papaver somniferum
PSO170G2184 Papaver somniferum
PSO357G0121 Papaver somniferum
PSO782G1189 Papaver somniferum
QL03p017951 Quercus lobata
QL10p021033 Quercus lobata
RcHm_v2.0_Chr3g0456661 Rosa chinensis
RcHm_v2.0_Chr7g0183831 Rosa chinensis
Rhsim11G0092600 Rhododendron simsii
Rhsim12G0147500 Rhododendron simsii
Sabra05G0027000 Salix brachista
Sabra13G0010000 Salix brachista
Sc09g0002790 Simmondsia chinensis
Sc12g0006850 Simmondsia chinensis
Sc16g0008850 Simmondsia chinensis
Sed0009501 Sechium edule
Sed0013561 Sechium edule
Sed0027849 Sechium edule
SEGI_23768 Sequoiadendron giganteum
SEGI_34081 Sequoiadendron giganteum
SGA_v2.0_scaffold4G01966 Striga asiatica
SHI19000 Sapria himalayana
SHI19001 Sapria himalayana
SMO347G0659 Selaginella moellendorffii
Solyc01g100130.3 Solanum lycopersicum
Solyc06g069360.3 Solanum lycopersicum
Sopen01g043640 Solanum pennellii
Sopen06g026620 Solanum pennellii
Sp3g04540 Schrenkiella parvula
TAR365G0619 Trochodendron aralioides
TAR629G3472 Trochodendron aralioides
TAR633G0751 Trochodendron aralioides
THA.LOC104802783 Tarenaya hassleriana
THA.LOC104819392 Tarenaya hassleriana
Thecc.03G109900 Theobroma cacao
Thecc.03G110000 Theobroma cacao
Thecc.05G319200 Theobroma cacao
Thhalv10020032m.g Eutrema salsugineum
TPR.G1632 Trifolium pratense
TPR.G2027 Trifolium pratense
TPR.G5228 Trifolium pratense
TWI12G0598 Tripterygium wilfordii
TWI56G0232 Tripterygium wilfordii
unitig_22.g6640 Utricularia gibba
unitig_37.g12623 Utricularia gibba
unitig_46.g18369 Utricularia gibba
unitig_46.g18370 Utricularia gibba
unitig_46.g18371 Utricularia gibba
vmacro01538 Vaccinium macrocarpon
vmacro16472 Vaccinium macrocarpon
VMungo0720G0572 Vigna mungo
VMungo1215G0992 Vigna mungo
Zm00001eb380630 Zea mays
Zm00001eb396440 Zea mays

User provided reference genes

Program Settings