Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p09610 Brassica napus
A04p05430 Brassica napus
A07p22070 Brassica napus
A07p41100 Brassica napus
Aa31LG10G13840 Aethionema arabicum
Aa31LG3G4680 Aethionema arabicum
Actinidia15385 Actinidia chinensis
Actinidia19233 Actinidia chinensis
Actinidia19234 Actinidia chinensis
Actinidia21484 Actinidia chinensis
Actinidia21485 Actinidia chinensis
Actinidia22497 Actinidia chinensis
Actinidia22498 Actinidia chinensis
Ah.16g109840 Amaranthus hybridus
AL2G15880 Arabidopsis lyrata
AL5G35390 Arabidopsis lyrata
Aqoxy6G02414 Aquilegia oxysepala
Aqoxy6G02819 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4F0PLK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6PK8GH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AGL6EL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I6NLK3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JCP29K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NZLE3F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZAY3TB Arachis hypogaea
AT1G60700 Arabidopsis thaliana
AT1G75530 Arabidopsis thaliana
AT3G54350 Arabidopsis thaliana
ATR0681G178 Amborella trichopoda
Atru.chr13.365 Acer truncatum
Atru.chr3.755 Acer truncatum
AUR62014441 Chenopodium quinoa
AUR62034560 Chenopodium quinoa
BcaB02g07740 Brassica carinata
BcaB02g08486 Brassica carinata
BcaB05g22216 Brassica carinata
BcaC02g09071 Brassica carinata
BcaC08g44678 Brassica carinata
BcaC08g47035 Brassica carinata
BcaC08g47343 Brassica carinata
BolC2t07712H Brassica oleracea
BolC4t25386H Brassica oleracea
BolC6t37398H Brassica oleracea
BolC6t39991H Brassica oleracea
BraA02t06025Z Brassica rapa
BraA04t16245Z Brassica rapa
BraA07t29890Z Brassica rapa
BraA07t31646Z Brassica rapa
C02p16020 Brassica napus
C04p38110 Brassica napus
C06p22110 Brassica napus
C06p49520 Brassica napus
CAN.G358.10 Capsicum annuum
CAN.G743.4 Capsicum annuum
CANSAT01G1241 Cannabis sativa
CANSAT25G2720 Cannabis sativa
CARHR068930 Cardamine hirsuta
CARHR164260 Cardamine hirsuta
Carub.0002s0463 Capsella rubella
Carub.0002s2239 Capsella rubella
Carub.0005s2094 Capsella rubella
Ca_02062_v3 Cicer arietinum L.
Ca_22357_v3 Cicer arietinum L.
CBR_g46835 Chara braunii
Cc07_g10320 Coffea canephora
Cc10_g02150 Coffea canephora
CDE04G0586 Ceratophyllum demersum
CDE12G0898 Ceratophyllum demersum
Cfa006932 Carpinus fangiana
Cfa013901 Carpinus fangiana
Ciclev10000241m.g Citrus clementina
Ciclev10024938m.g Citrus clementina
CiPaw.07G054900 Carya illinoinensis
CiPaw.07G154600 Carya illinoinensis
CiPaw.08G062300 Carya illinoinensis
ClCG09G013610 Citrullus lanatus
COL.COLO4_21978 Corchorus olitorius
COL.COLO4_26207 Corchorus olitorius
Cpa.g.sc140.15 Carica papaya
Cpa.g.sc6.203 Carica papaya
Cre16.g660100 Chlamydomonas reinhardtii
CsaV3_7G006050 Cucumis sativus L.
CSS0003108 Camellia sinensis var. sinensis
CSS0020058 Camellia sinensis var. sinensis
DCAR_002204 Daucus carota
DCAR_013846 Daucus carota
DCAR_016358 Daucus carota
Dinv31807 Davidia involucrata
Dinv33594 Davidia involucrata
Dinv39481 Davidia involucrata
Duzib093G0905 Durio zibethinus
Duzib116G0605 Durio zibethinus
Duzib147G0927 Durio zibethinus
Duzib264G1123 Durio zibethinus
ECA238G0986 Erigeron canadensis
ECA246G0952 Erigeron canadensis
EL10Ac1g00562 Beta vulgaris
Eucgr.J02391 Eucalyptus grandis
FAN15G2556 Fragaria x ananassa
FAN19G1691 Fragaria x ananassa
FAN20G0808 Fragaria x ananassa
FAN23G0157 Fragaria x ananassa
FAN26G0950 Fragaria x ananassa
FAN27G1378 Fragaria x ananassa
FAN28G2121 Fragaria x ananassa
FvH4_1g12250 Fragaria vesca
FvH4_2g38980 Fragaria vesca
Glyma.02G051400 Glycine max
Glyma.04G027100 Glycine max
Glyma.06G027100 Glycine max
Glyma.16G131600 Glycine max
Gohir.A01G113200 Gossypium hirsutum
Gohir.A11G178700 Gossypium hirsutum
Gohir.D01G100700 Gossypium hirsutum
Gohir.D11G186300 Gossypium hirsutum
Gorai.002G125300 Gossypium raimondii
Gorai.007G198000 Gossypium raimondii
GSVIVG01009819001 Vitis vinifera
GSVIVG01018838001 Vitis vinifera
HanXRQChr05g0151321 Helianthus annuus
HanXRQChr07g0191301 Helianthus annuus
HanXRQChr09g0260771 Helianthus annuus
HanXRQChr14g0441551 Helianthus annuus
Haze_03818 Corylus avellana
Haze_22581 Corylus avellana
Hma1.2p1_0316F.1_g122920 Hydrangea macrophylla
Hma1.2p1_0525F.1_g172540 Hydrangea macrophylla
Hma1.2p1_0921F.1_g236800 Hydrangea macrophylla
Hma1.2p1_1386F.1_g279850 Hydrangea macrophylla
Hund17214 Selenicereus undatus
Hund26871 Selenicereus undatus
Hund26872 Selenicereus undatus
Lalb_Chr11g0062081 Lupinus albus
Lalb_Chr16g0390981 Lupinus albus
Lalb_Chr23g0266311 Lupinus albus
Lj1g0014383 Lotus japonicus
Lj4C213G3 Lonicera japonica
Lj4g0006506 Lotus japonicus
Lsat_1_v5_gn_2_78280 Lactuca sativa
Lsat_1_v5_gn_5_25840 Lactuca sativa
Manes.01G142000 Manihot esculenta
Manes.02G100600 Manihot esculenta
Manes.05G152900 Manihot esculenta
Manes.18G018000 Manihot esculenta
Mapoly0043s0034 Marchantia polymorpha
MBI05_g05430_MAGBIO Magnolia biondii
MCO16G060 Micromonas commoda
MD02G1136400 Malus domestica
MD08G1021200 Malus domestica
MD15G1019100 Malus domestica
MD15G1250100 Malus domestica
Medtr3g113050 Medicago truncatula
Medtr8g076470 Medicago truncatula
Medtr8g076570 Medicago truncatula
MELO3C018687.2 Cucumis melo
Migut.C00786 Erythranthe guttata
Migut.H02489 Erythranthe guttata
MSTRG.1229 Avicennia marina
MSTRG.23278 Avicennia marina
MSTRG.2501 Avicennia marina
Nitab4.5_0000352g0100 Nicotiana tabacum
Nitab4.5_0000587g0090 Nicotiana tabacum
Nitab4.5_0002266g0110 Nicotiana tabacum
Nitab4.5_0004086g0030 Nicotiana tabacum
Nitab4.5_0007395g0010 Nicotiana tabacum
Nn8g39421 Nelumbo nucifera
Oeu018119.1 Olea europaea
Oeu030398.3 Olea europaea
Oeu035322.1 Olea europaea
Os03g0800800 Oryza sativa ssp. japonica
Os07g0190900 Oryza sativa ssp. japonica
Peaxi162Scf00083g01811 Petunia axillaris
Peaxi162Scf00640g00214 Petunia axillaris
Peaxi162Scf01084g00013 Petunia axillaris
PGR031G2308 Punica granatum
PGR102G0752 Punica granatum
Phvul.003G258600 Phaseolus vulgaris
Phvul.009G014000 Phaseolus vulgaris
Potri.002G028300 Populus trichocarpa
Potri.005G117900 Populus trichocarpa
Potri.005G234300 Populus trichocarpa
Potri.007G016900 Populus trichocarpa
Pp3c11_17150 Physcomitrium patens
Prupe.1G371200 Prunus persica
Prupe.7G164200 Prunus persica
Psat4g097160 Pisum sativum
Psat5g013920 Pisum sativum
PSO210G2567 Papaver somniferum
PSO210G6466 Papaver somniferum
PSO210G6806 Papaver somniferum
PSO541G0723 Papaver somniferum
PSO675G9200 Papaver somniferum
QL02p010643 Quercus lobata
QL06p034509 Quercus lobata
QL08p045938 Quercus lobata
QL09p025225 Quercus lobata
RcHm_v2.0_Chr2g0100051 Rosa chinensis
RcHm_v2.0_Chr6g0302071 Rosa chinensis
Rhsim08G0036300 Rhododendron simsii
Sabra02G0022300 Salix brachista
Sabra05G0097000 Salix brachista
Sabra05G0180600 Salix brachista
Sabra07G0014200 Salix brachista
SalBow7G4003 Salvia bowleyana
SalBow7G4386 Salvia bowleyana
SalBow8G5479 Salvia bowleyana
Sc15g0007250 Simmondsia chinensis
Sed0009107 Sechium edule
Sed0020301 Sechium edule
SEGI_41281 Sequoiadendron giganteum
SGA_v2.0_scaffold11G05865 Striga asiatica
SGA_v2.0_scaffold201G41317 Striga asiatica
SGA_v2.0_scaffold280G46847 Striga asiatica
SGA_v2.0_scaffold51G18791 Striga asiatica
Solyc02g084620.3 Solanum lycopersicum
Solyc07g032510.3 Solanum lycopersicum
Sopen02g029290 Solanum pennellii
Sp5g08050 Schrenkiella parvula
Sp5g30660 Schrenkiella parvula
Sp6g17470 Schrenkiella parvula
TAR381G1499 Trochodendron aralioides
TAR625G0910 Trochodendron aralioides
TAR628G0961 Trochodendron aralioides
THA.LOC104811350 Tarenaya hassleriana
THA.LOC104813188 Tarenaya hassleriana
THA.LOC104813234 Tarenaya hassleriana
THA.LOC104818538 Tarenaya hassleriana
THA.LOC104823073 Tarenaya hassleriana
Thecc.01G024500 Theobroma cacao
Thecc.08G037000 Theobroma cacao
Thhalv10010165m.g Eutrema salsugineum
Thhalv10013485m.g Eutrema salsugineum
Thhalv10019439m.g Eutrema salsugineum
TPR.G10763 Trifolium pratense
TPR.G10767 Trifolium pratense
TPR.G31200 Trifolium pratense
TPR.G33382 Trifolium pratense
TPR.G33408 Trifolium pratense
TWI09G1198 Tripterygium wilfordii
TWI12G1064 Tripterygium wilfordii
TWI36G1564 Tripterygium wilfordii
unitig_736.g22636 Utricularia gibba
unitig_899.g14629 Utricularia gibba
vmacro22101 Vaccinium macrocarpon
VMungo0251G2229 Vigna mungo
VMungo1309G1755 Vigna mungo
Zm00001eb212750 Zea mays
Zm00001eb302390 Zea mays

User provided reference genes

Program Settings