Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p17820 Brassica napus
A04p02290 Brassica napus
A04p24150 Brassica napus
A05p13850 Brassica napus
A07p24410 Brassica napus
Aa31LG10G13510 Aethionema arabicum
Aa31LG5G5320 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2799 Anthoceros agrestis
Actinidia32950 Actinidia chinensis
Actinidia32951 Actinidia chinensis
Actinidia35908 Actinidia chinensis
Ah.02g115110 Amaranthus hybridus
Ah.12g062150 Amaranthus hybridus
AL4G26900 Arabidopsis lyrata
AL5G40900 Arabidopsis lyrata
Aqoxy2G03945 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0F4JWJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6D1JC0 Arachis hypogaea
AT2G31660 Arabidopsis thaliana
AT3G59020 Arabidopsis thaliana
ATR0609G059 Amborella trichopoda
Atru.chr3.1801 Acer truncatum
AUR62026438 Chenopodium quinoa
AUR62036490 Chenopodium quinoa
AUR62037083 Chenopodium quinoa
AUR62042918 Chenopodium quinoa
BcaB01g04029 Brassica carinata
BcaB02g07490 Brassica carinata
BcaB02g08232 Brassica carinata
BcaB02g10406 Brassica carinata
BcaB06g28532 Brassica carinata
BcaC01g05937 Brassica carinata
BcaC01g06114 Brassica carinata
BcaC02g10037 Brassica carinata
BcaC02g11274 Brassica carinata
BcaC05g28286 Brassica carinata
BcaC07g38537 Brassica carinata
BcaC08g44950 Brassica carinata
BolC3t14469H Brassica oleracea
BolC4t23366H Brassica oleracea
BolC4t23379H Brassica oleracea
BolC4t24933H Brassica oleracea
BolC4t27579H Brassica oleracea
BolC5t33067H Brassica oleracea
BolC6t37745H Brassica oleracea
BolC8t48963H Brassica oleracea
BraA03t11046Z Brassica rapa
BraA04t15960Z Brassica rapa
BraA04t17935Z Brassica rapa
BraA05t20321Z Brassica rapa
BraA07t30088Z Brassica rapa
C03p20890 Brassica napus
C04p18130 Brassica napus
C04p18220 Brassica napus
C04p33640 Brassica napus
C04p60880 Brassica napus
C05p43340 Brassica napus
C06p25840 Brassica napus
C08p13300 Brassica napus
CAN.G710.41 Capsicum annuum
CANSAT78G0453 Cannabis sativa
CARHR125290 Cardamine hirsuta
CARHR169430 Cardamine hirsuta
Carub.0004s1296 Capsella rubella
Carub.0005s2578 Capsella rubella
Ca_07104_v3 Cicer arietinum L.
Ca_07106_v3 Cicer arietinum L.
Ca_11422_v3 Cicer arietinum L.
CBR_g40497 Chara braunii
Cc03_g10590 Coffea canephora
CDE07G0250 Ceratophyllum demersum
CDE07G0525 Ceratophyllum demersum
Cfa008548 Carpinus fangiana
Cfa012231 Carpinus fangiana
Cfa026283 Carpinus fangiana
Ciclev10018740m.g Citrus clementina
CiPaw.01G108500 Carya illinoinensis
CiPaw.02G059800 Carya illinoinensis
ClCG08G003770 Citrullus lanatus
COL.COLO4_10182 Corchorus olitorius
COL.COLO4_10183 Corchorus olitorius
Cpa.g.sc1200.1 Carica papaya
Cpa.g.sc50.133 Carica papaya
Cre13.g562450 Chlamydomonas reinhardtii
CsaV3_1G023100 Cucumis sativus L.
CSS0009663 Camellia sinensis var. sinensis
CSS0033102 Camellia sinensis var. sinensis
DCAR_002652 Daucus carota
DCAR_026823 Daucus carota
DCAR_030308 Daucus carota
Dinv22652 Davidia involucrata
Duzib151G0845 Durio zibethinus
Duzib212G1023 Durio zibethinus
Duzib268G0977 Durio zibethinus
ECA233G2610 Erigeron canadensis
ECA234G1297 Erigeron canadensis
ECA246G5341 Erigeron canadensis
EL10Ac5g11639 Beta vulgaris
Eucgr.H02619 Eucalyptus grandis
FAN07G1377 Fragaria x ananassa
FAN12G0646 Fragaria x ananassa
FAN12G1472 Fragaria x ananassa
FAN17G1115 Fragaria x ananassa
FAN22G0173 Fragaria x ananassa
FvH4_4g12200 Fragaria vesca
Glyma.08G258700 Glycine max
Glyma.10G297700 Glycine max
Glyma.18G282800 Glycine max
Gohir.A02G013100 Gossypium hirsutum
Gohir.A09G210800 Gossypium hirsutum
Gohir.A10G136400 Gossypium hirsutum
Gohir.D09G204200 Gossypium hirsutum
Gohir.D10G130200 Gossypium hirsutum
Gorai.005G017400 Gossypium raimondii
Gorai.006G228100 Gossypium raimondii
Gorai.011G143900 Gossypium raimondii
GSVIVG01031670001 Vitis vinifera
HanXRQChr03g0062991 Helianthus annuus
HanXRQChr09g0240021 Helianthus annuus
HanXRQChr15g0471871 Helianthus annuus
HanXRQChr16g0527621 Helianthus annuus
Haze_11083 Corylus avellana
Hma1.2p1_0412F.1_g147160 Hydrangea macrophylla
Hma1.2p1_2411F.1_g321580 Hydrangea macrophylla
HPP92_013645 Vanilla planifolia
HPP92_013646 Vanilla planifolia
HPP92_013664 Vanilla planifolia
Hund15147 Selenicereus undatus
Lalb_Chr02g0144511 Lupinus albus
Lalb_Chr04g0258061 Lupinus albus
Lalb_Chr06g0164651 Lupinus albus
Lalb_Chr10g0092141 Lupinus albus
Lalb_Chr10g0092151 Lupinus albus
Lj1g0005822 Lotus japonicus
Lj1g0006528 Lotus japonicus
Lj1g0019142 Lotus japonicus
Lj1g0021376 Lotus japonicus
Lj3C859G10 Lonicera japonica
Lj3g0017626 Lotus japonicus
Lj5g0000254 Lotus japonicus
Lj6A731T90 Lonicera japonica
Lsat_1_v5_gn_1_116260 Lactuca sativa
Lsat_1_v5_gn_3_105661 Lactuca sativa
Lsat_1_v5_gn_4_151780 Lactuca sativa
Lsat_1_v5_gn_4_22540 Lactuca sativa
Lsat_1_v5_gn_4_22560 Lactuca sativa
Lsat_1_v5_gn_8_128561 Lactuca sativa
Lsat_1_v5_gn_8_86941 Lactuca sativa
Manes.04G061600 Manihot esculenta
Manes.11G114100 Manihot esculenta
Mapoly0014s0213 Marchantia polymorpha
MBI03_g02127_MAGBIO Magnolia biondii
MBI07_g00622_MAGBIO Magnolia biondii
MBI07_g07334_MAGBIO Magnolia biondii
MBI11_g04281_MAGBIO Magnolia biondii
MCO08G239 Micromonas commoda
MD00G1128300 Malus domestica
MD04G1028800 Malus domestica
Medtr1g116957 Medicago truncatula
Medtr7g021500 Medicago truncatula
Medtr7g107210 Medicago truncatula
Medtr7g107220 Medicago truncatula
MELO3C010592.2 Cucumis melo
Migut.N00442 Erythranthe guttata
MSTRG.21983 Avicennia marina
MSTRG.24604 Avicennia marina
Nitab4.5_0000978g0140 Nicotiana tabacum
Nitab4.5_0001526g0120 Nicotiana tabacum
Nitab4.5_0001687g0080 Nicotiana tabacum
Nitab4.5_0004758g0040 Nicotiana tabacum
Nn7g37146 Nelumbo nucifera
Oeu007217.1 Olea europaea
Oeu013399.2 Olea europaea
Oeu013400.2 Olea europaea
Os02g0474700 Oryza sativa ssp. japonica
Os04g0337201 Oryza sativa ssp. japonica
Os04g0337300 Oryza sativa ssp. japonica
Peaxi162Scf00286g00442 Petunia axillaris
Peaxi162Scf00378g00635 Petunia axillaris
PGR135G0001 Punica granatum
Phvul.005G111900 Phaseolus vulgaris
Phvul.007G001700 Phaseolus vulgaris
Phvul.008G018400 Phaseolus vulgaris
Potri.002G232600 Populus trichocarpa
Potri.014G149600 Populus trichocarpa
Pp3c15_21650 Physcomitrium patens
Pp3c9_22260 Physcomitrium patens
PRCOL_00000974 Prasinoderma coloniale
Prupe.1G180500 Prunus persica
Psat3g188480 Pisum sativum
Psat3g188520 Pisum sativum
Psat6g243600 Pisum sativum
Psat6g243680 Pisum sativum
Psat7g116160 Pisum sativum
PSO017G6957 Papaver somniferum
PSO675G7863 Papaver somniferum
QL09p053081 Quercus lobata
QL10p044188 Quercus lobata
RcHm_v2.0_Chr1g0316911 Rosa chinensis
RcHm_v2.0_Chr1g0316961 Rosa chinensis
RcHm_v2.0_Chr2g0157261 Rosa chinensis
RcHm_v2.0_Chr4g0409961 Rosa chinensis
Rhsim09G0037400 Rhododendron simsii
Sabra02G0177400 Salix brachista
Sabra14G0112800 Salix brachista
SalBow4G1809 Salvia bowleyana
SalBow4G1873 Salvia bowleyana
SalBow6G0725 Salvia bowleyana
Sc01g0005710 Simmondsia chinensis
Sed0001099 Sechium edule
Sed0004282 Sechium edule
SEGI_14344 Sequoiadendron giganteum
SEGI_17078 Sequoiadendron giganteum
SEGI_17503 Sequoiadendron giganteum
SEGI_20916 Sequoiadendron giganteum
SEGI_22305 Sequoiadendron giganteum
SEGI_37762 Sequoiadendron giganteum
SGA_v2.0_scaffold109G31145 Striga asiatica
SGA_v2.0_scaffold290G47298 Striga asiatica
SHI26204 Sapria himalayana
SMO169G0196 Selaginella moellendorffii
Solyc09g098240.4 Solanum lycopersicum
Sopen09g036180 Solanum pennellii
Sp4g14060 Schrenkiella parvula
Sp5g03960 Schrenkiella parvula
TAR376G1173 Trochodendron aralioides
TAR636G0823 Trochodendron aralioides
THA.LOC104800912 Tarenaya hassleriana
THA.LOC104803420 Tarenaya hassleriana
THA.LOC104815866 Tarenaya hassleriana
Thecc.04G180600 Theobroma cacao
Thhalv10005763m.g Eutrema salsugineum
Thhalv10016172m.g Eutrema salsugineum
TPR.G2948 Trifolium pratense
TPR.G8888 Trifolium pratense
TWI15G0371 Tripterygium wilfordii
TWI38G1748 Tripterygium wilfordii
TWI63G1206 Tripterygium wilfordii
unitig_21.g20552 Utricularia gibba
unitig_21.g20553 Utricularia gibba
vmacro00563 Vaccinium macrocarpon
VMungo0720G0240 Vigna mungo
VMungo1383G3085 Vigna mungo
Zm00001eb002050 Zea mays
Zm00001eb072120 Zea mays
Zm00001eb180520 Zea mays
Zm00001eb241000 Zea mays
Zm00001eb284800 Zea mays

User provided reference genes

Program Settings