Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p30810 Brassica napus
A05p01680 Brassica napus
A09p49190 Brassica napus
Aa31LG10G11120 Aethionema arabicum
Aa31LG5G19130 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis
Actinidia00986 Actinidia chinensis
Actinidia00987 Actinidia chinensis
Actinidia07807 Actinidia chinensis
Ah.05g176210 Amaranthus hybridus
AL4G38260 Arabidopsis lyrata
AL5G37530 Arabidopsis lyrata
Aqoxy2G00754 Aquilegia oxysepala
Aqoxy466s002 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.B5C26Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HIE7A8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N80L0Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea
AT2G40430 Arabidopsis thaliana
AT3G56210 Arabidopsis thaliana
ATR1127G109 Amborella trichopoda
Atru.BG.256.p Acer truncatum
Atru.chr12.137 Acer truncatum
AUR62012334 Chenopodium quinoa
AUR62012335 Chenopodium quinoa
AUR62022976 Chenopodium quinoa
AUR62022979 Chenopodium quinoa
AUR62042571 Chenopodium quinoa
BcaB01g00016 Brassica carinata
BcaB01g00017 Brassica carinata
BcaB06g29140 Brassica carinata
BcaB08g34630 Brassica carinata
BcaC02g07313 Brassica carinata
BcaC02g12712 Brassica carinata
BcaC07g39936 Brassica carinata
BolC4t21844H Brassica oleracea
BolC4t28327H Brassica oleracea
BolC8t50775H Brassica oleracea
BraA04t18540Z Brassica rapa
BraA05t19165Z Brassica rapa
BraA09t40372Z Brassica rapa
C04p01940 Brassica napus
C04p68230 Brassica napus
C06p23580 Brassica napus
C08p31530 Brassica napus
CAN.G118.19 Capsicum annuum
CAN.G39.16 Capsicum annuum
CAN.G39.17 Capsicum annuum
CANSAT56G2377 Cannabis sativa
CANSAT56G2966 Cannabis sativa
CARHR135540 Cardamine hirsuta
CARHR166360 Cardamine hirsuta
Carub.0004s2268 Capsella rubella
Carub.0005s2299 Capsella rubella
Ca_06017_v3 Cicer arietinum L.
Ca_06977_v3 Cicer arietinum L.
Ca_15179_v3 Cicer arietinum L.
Ca_27928_v3 Cicer arietinum L.
CBR_g88544 Chara braunii
Cc02_g05710 Coffea canephora
Cc02_g05720 Coffea canephora
CDE01G0559 Ceratophyllum demersum
CDE02G4284 Ceratophyllum demersum
CDE03G0451 Ceratophyllum demersum
CDE04G1223 Ceratophyllum demersum
Cfa025636 Carpinus fangiana
Ciclev10031901m.g Citrus clementina
Ciclev10032836m.g Citrus clementina
CiPaw.02G197300 Carya illinoinensis
CiPaw.02G197400 Carya illinoinensis
ClCG00G004700 Citrullus lanatus
ClCG06G010230 Citrullus lanatus
ClCG07G004800 Citrullus lanatus
ClCG07G004810 Citrullus lanatus
COL.COLO4_25825 Corchorus olitorius
Cpa.g.sc19.99 Carica papaya
Cre07.g348250 Chlamydomonas reinhardtii
CsaV3_5G010720 Cucumis sativus L.
CsaV3_5G010730 Cucumis sativus L.
CSS0017108 Camellia sinensis var. sinensis
CSS0032617 Camellia sinensis var. sinensis
DCAR_011891 Daucus carota
DCAR_011892 Daucus carota
Dinv21809 Davidia involucrata
Dinv21810 Davidia involucrata
Duzib106G0255 Durio zibethinus
Duzib114G0765 Durio zibethinus
ECA233G4001 Erigeron canadensis
ECA238G3482 Erigeron canadensis
EL10Ac2g04290 Beta vulgaris
EL10Ac2g04291 Beta vulgaris
EL10Ac2g04293 Beta vulgaris
EL10Ac2g04295 Beta vulgaris
Eucgr.G03110 Eucalyptus grandis
Eucgr.J00153 Eucalyptus grandis
FAN01G1994 Fragaria x ananassa
FAN03G1008 Fragaria x ananassa
FAN06G0491 Fragaria x ananassa
FAN10G0428 Fragaria x ananassa
FvH4_7g25501 Fragaria vesca
FvH4_7g25510 Fragaria vesca
Glyma.02G230100 Glycine max
Glyma.11G234700 Glycine max
Glyma.14G196400 Glycine max
Glyma.18G022300 Glycine max
Gohir.A05G332500 Gossypium hirsutum
Gohir.A10G240750 Gossypium hirsutum
Gohir.A10G240800 Gossypium hirsutum
Gohir.D04G071200 Gossypium hirsutum
Gohir.D10G253000 Gossypium hirsutum
Gorai.011G293300 Gossypium raimondii
Gorai.012G080100 Gossypium raimondii
GSVIVG01032722001 Vitis vinifera
GSVIVG01032723001 Vitis vinifera
HanXRQChr04g0102991 Helianthus annuus
HanXRQChr07g0186551 Helianthus annuus
HanXRQChr10g0309081 Helianthus annuus
HanXRQChr17g0560791 Helianthus annuus
Haze_17321 Corylus avellana
Haze_17322 Corylus avellana
Hma1.2p1_0322F.1_g124790 Hydrangea macrophylla
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla
Hma1.2p1_1240F.1_g269630 Hydrangea macrophylla
Hma1.2p1_1240F.1_g269640 Hydrangea macrophylla
HPP92_001733 Vanilla planifolia
HPP92_013966 Vanilla planifolia
Hund13511 Selenicereus undatus
Hund13513 Selenicereus undatus
Lalb_Chr08g0231351 Lupinus albus
Lalb_Chr17g0336941 Lupinus albus
Lj1A963T49 Lonicera japonica
Lj1C963G12 Lonicera japonica
Lj1g0011333 Lotus japonicus
Lj6g0011522 Lotus japonicus
Lj8C58T1 Lonicera japonica
LjContig00357g0012394 Lotus japonicus
Lju41C22T0 Lonicera japonica
Lsat_1_v5_gn_2_125961 Lactuca sativa
Lsat_1_v5_gn_5_82241 Lactuca sativa
Lsat_1_v5_gn_8_13401 Lactuca sativa
Manes.07G139400 Manihot esculenta
Manes.10G008400 Manihot esculenta
Mapoly0001s0132 Marchantia polymorpha
Mapoly0001s0439 Marchantia polymorpha
MBI16_g02735_MAGBIO Magnolia biondii
MBI16_g06795_MAGBIO Magnolia biondii
MCO01G055 Micromonas commoda
MD01G1161400 Malus domestica
MD01G1161500 Malus domestica
MD07G1229300 Malus domestica
MD07G1229400 Malus domestica
Medtr3g072120 Medicago truncatula
Medtr5g083780 Medicago truncatula
MELO3C020107.2 Cucumis melo
MELO3C020109.2 Cucumis melo
Migut.A01076 Erythranthe guttata
Migut.N01809 Erythranthe guttata
MSTRG.12212 Avicennia marina
MSTRG.5049 Avicennia marina
Nitab4.5_0000263g0070 Nicotiana tabacum
Nitab4.5_0000263g0100 Nicotiana tabacum
Nitab4.5_0000928g0050 Nicotiana tabacum
Nitab4.5_0000928g0070 Nicotiana tabacum
Nn2g11068 Nelumbo nucifera
Nn2g11076 Nelumbo nucifera
Oeu017758.1 Olea europaea
Oeu026180.1 Olea europaea
Oeu026182.1 Olea europaea
Os03g0665800 Oryza sativa ssp. japonica
Os05g0144200 Oryza sativa ssp. japonica
Peaxi162Scf00284g00123 Petunia axillaris
Peaxi162Scf00284g00133 Petunia axillaris
PGR044G1552 Punica granatum
PGR142G3983 Punica granatum
PGSC0003DMG400009431 Solanum tuberosum
PGSC0003DMG400010239 Solanum tuberosum
PGSC0003DMG400024457 Solanum tuberosum
Phvul.001G248100 Phaseolus vulgaris
Phvul.008G258300 Phaseolus vulgaris
Potri.008G075600 Populus trichocarpa
Potri.008G075700 Populus trichocarpa
Pp3c22_7700 Physcomitrium patens
Pp3c8_1670 Physcomitrium patens
PRCOL_00000452 Prasinoderma coloniale
Prupe.2G259500 Prunus persica
Prupe.2G259600 Prunus persica
Psat0s1511g0040 Pisum sativum
Psat5g125520 Pisum sativum
Psat5g130160 Pisum sativum
PSO017G6389 Papaver somniferum
PSO170G0776 Papaver somniferum
PSO210G7497 Papaver somniferum
PSO832G1082 Papaver somniferum
QL08p064284 Quercus lobata
QL08p064289 Quercus lobata
RcHm_v2.0_Chr1g0371481 Rosa chinensis
RcHm_v2.0_Chr1g0371491 Rosa chinensis
Rhsim09G0182800 Rhododendron simsii
Rhsim09G0183300 Rhododendron simsii
Sabra08G0056200 Salix brachista
Sabra08G0056300 Salix brachista
SalBow1G3835 Salvia bowleyana
SalBow3G4547 Salvia bowleyana
SalBow8G2269 Salvia bowleyana
SalBow8G4474 Salvia bowleyana
Sc10g0002800 Simmondsia chinensis
Sc10g0002810 Simmondsia chinensis
Sed0016960 Sechium edule
Sed0024728 Sechium edule
SEGI_09795 Sequoiadendron giganteum
SEGI_20256 Sequoiadendron giganteum
SEGI_38813 Sequoiadendron giganteum
SGA_v2.0_scaffold36G14267 Striga asiatica
SHI18673 Sapria himalayana
SHI18675 Sapria himalayana
SMO147G0318 Selaginella moellendorffii
Solyc02g068420.4 Solanum lycopersicum
Solyc02g076790.4 Solanum lycopersicum
Solyc06g050820.3 Solanum lycopersicum
Solyc06g050837.1 Solanum lycopersicum
Sopen02g017560 Solanum pennellii
Sopen02g021690 Solanum pennellii
Sopen06g016500 Solanum pennellii
Sp4g22770 Schrenkiella parvula
Sp5g06290 Schrenkiella parvula
TAR623G0678 Trochodendron aralioides
TAR623G1472 Trochodendron aralioides
THA.LOC104814944 Tarenaya hassleriana
THA.LOC104824346 Tarenaya hassleriana
THA.LOC104824347 Tarenaya hassleriana
Thecc.10G007000 Theobroma cacao
Thecc.10G007100 Theobroma cacao
Thhalv10006252m.g Eutrema salsugineum
Thhalv10016839m.g Eutrema salsugineum
TPR.G14721 Trifolium pratense
TPR.G28641 Trifolium pratense
TWI38G2197 Tripterygium wilfordii
TWI56G0434 Tripterygium wilfordii
unitig_27.g25095 Utricularia gibba
unitig_32.g11706 Utricularia gibba
unitig_33.g30211 Utricularia gibba
vmacro09982 Vaccinium macrocarpon
vmacro09984 Vaccinium macrocarpon
VMungo0647G1938 Vigna mungo
VMungo1383G3724 Vigna mungo
Zm00001eb065520 Zea mays
Zm00001eb417890 Zea mays

User provided reference genes

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