Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p24680 Brassica napus
A02p22080 Brassica napus
A07p14590 Brassica napus
A07p27670 Brassica napus
A07p43470 Brassica napus
A09p42520 Brassica napus
Aa31LG4G8210 Aethionema arabicum
Aa31LG7G6190 Aethionema arabicum
Actinidia10319 Actinidia chinensis
Actinidia17222 Actinidia chinensis
Actinidia27183 Actinidia chinensis
Actinidia30768 Actinidia chinensis
Actinidia35890 Actinidia chinensis
Ah.05g170030 Amaranthus hybridus
AL1G35710 Arabidopsis lyrata
AL2G38480 Arabidopsis lyrata
AL6G41650 Arabidopsis lyrata
Aqoxy2G04081 Aquilegia oxysepala
Aqoxy6G00791 Aquilegia oxysepala
Aqoxy6G02333 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HB3V31 Arachis hypogaea
AT1G22250 Arabidopsis thaliana
AT1G78170 Arabidopsis thaliana
AT4G08910 Arabidopsis thaliana
ATR0782G003 Amborella trichopoda
Atru.chr13.1197 Acer truncatum
Atru.chr3.1657 Acer truncatum
AUR62027750 Chenopodium quinoa
AUR62038513 Chenopodium quinoa
AUR62038516 Chenopodium quinoa
BcaB02g07151 Brassica carinata
BcaB02g07152 Brassica carinata
BcaB03g14223 Brassica carinata
BcaB03g14224 Brassica carinata
BcaB03g15984 Brassica carinata
BcaB05g25124 Brassica carinata
BcaB07g32247 Brassica carinata
BcaC05g26153 Brassica carinata
BcaC06g34946 Brassica carinata
BcaC08g45431 Brassica carinata
BcaC08g47392 Brassica carinata
BolC2t09563H Brassica oleracea
BolC5t30835H Brassica oleracea
BolC6t38228H Brassica oleracea
BolC6t40235H Brassica oleracea
BolC7t42674H Brassica oleracea
BraA01t02380Z Brassica rapa
BraA02t07210Z Brassica rapa
BraA07t29205Z Brassica rapa
BraA07t30408Z Brassica rapa
BraA07t31860Z Brassica rapa
BraA09t39728Z Brassica rapa
C05p21380 Brassica napus
C06p30640 Brassica napus
C06p52120 Brassica napus
C07p21480 Brassica napus
CAN.G101.15 Capsicum annuum
CANSAT25G0913 Cannabis sativa
CANSAT78G1882 Cannabis sativa
CARHR022610 Cardamine hirsuta
CARHR022620 Cardamine hirsuta
CARHR071630 Cardamine hirsuta
CARHR259930 Cardamine hirsuta
Carub.0001s2180 Capsella rubella
Carub.0002s2506 Capsella rubella
Carub.0006s2748 Capsella rubella
Ca_05274_v3 Cicer arietinum L.
Ca_15248_v3 Cicer arietinum L.
Cc10_g07250 Coffea canephora
CDE04G0076 Ceratophyllum demersum
CDE08G0150 Ceratophyllum demersum
CDE10G0971 Ceratophyllum demersum
CDE10G0994 Ceratophyllum demersum
CDE12G0481 Ceratophyllum demersum
Ciclev10002416m.g Citrus clementina
Ciclev10023373m.g Citrus clementina
CiPaw.01G106200 Carya illinoinensis
CiPaw.02G057300 Carya illinoinensis
CiPaw.07G180300 Carya illinoinensis
CiPaw.08G044800 Carya illinoinensis
ClCG08G004030 Citrullus lanatus
ClCG08G011070 Citrullus lanatus
ClCG11G015290 Citrullus lanatus
COL.COLO4_16406 Corchorus olitorius
COL.COLO4_24351 Corchorus olitorius
Cpa.g.c36743 Carica papaya
Cpa.g.sc36.127 Carica papaya
CsaV3_2G029650 Cucumis sativus L.
CsaV3_3G048710 Cucumis sativus L.
CsaV3_6G003190 Cucumis sativus L.
CSS0004996 Camellia sinensis var. sinensis
CSS0027836 Camellia sinensis var. sinensis
CSS0030073 Camellia sinensis var. sinensis
DCAR_029361 Daucus carota
Dinv14325 Davidia involucrata
Dinv22667 Davidia involucrata
Dinv44226 Davidia involucrata
Dinv44770 Davidia involucrata
Duzib041G0800 Durio zibethinus
Duzib093G0662 Durio zibethinus
Duzib116G0617 Durio zibethinus
Duzib151G0761 Durio zibethinus
Duzib268G0568 Durio zibethinus
Duzib268G0864 Durio zibethinus
ECA232G3648 Erigeron canadensis
EL10Ac1g01225 Beta vulgaris
Eucgr.B00020 Eucalyptus grandis
Eucgr.F02409 Eucalyptus grandis
FAN04G1068 Fragaria x ananassa
FAN08G2281 Fragaria x ananassa
FAN13G2774 Fragaria x ananassa
FAN18G1803 Fragaria x ananassa
FvH4_5g37370 Fragaria vesca
Glyma.04G102400 Glycine max
Glyma.06G103700 Glycine max
Glyma.13G088900 Glycine max
Glyma.14G172800 Glycine max
Gohir.A02G013402 Gossypium hirsutum
Gohir.A02G076100 Gossypium hirsutum
Gohir.A05G226700 Gossypium hirsutum
Gohir.D02G014400 Gossypium hirsutum
Gohir.D02G083400 Gossypium hirsutum
Gohir.D05G229400 Gossypium hirsutum
Gorai.005G017900 Gossypium raimondii
Gorai.005G094000 Gossypium raimondii
Gorai.009G237500 Gossypium raimondii
GSVIVG01009025001 Vitis vinifera
GSVIVG01013547001 Vitis vinifera
HanXRQChr15g0491861 Helianthus annuus
Haze_22261 Corylus avellana
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla
HPP92_011168 Vanilla planifolia
HPP92_011170 Vanilla planifolia
HPP92_019307 Vanilla planifolia
HPP92_023705 Vanilla planifolia
Hund16912 Selenicereus undatus
Hund26960 Selenicereus undatus
Lalb_Chr04g0253151 Lupinus albus
Lalb_Chr10g0102361 Lupinus albus
Lalb_Chr11g0065441 Lupinus albus
Lalb_Chr23g0270591 Lupinus albus
Lj1g0002648 Lotus japonicus
Lj4C103T16 Lonicera japonica
Lsat_1_v5_gn_9_41620 Lactuca sativa
Manes.02G153000 Manihot esculenta
Manes.04G050300 Manihot esculenta
Manes.11G114400 Manihot esculenta
Manes.18G067800 Manihot esculenta
MBI05_g19349_MAGBIO Magnolia biondii
MBI08_g28697_MAGBIO Magnolia biondii
MBI11_g35640_MAGBIO Magnolia biondii
MD08G1182400 Malus domestica
MD15G1368100 Malus domestica
Medtr3g074450 Medicago truncatula
Medtr5g063720 Medicago truncatula
MELO3C003450.2 Cucumis melo
MELO3C011023.2 Cucumis melo
MELO3C030199.2 Cucumis melo
Migut.N02898 Erythranthe guttata
MSTRG.22153 Avicennia marina
MSTRG.24460 Avicennia marina
MSTRG.24593 Avicennia marina
Nitab4.5_0000232g0230 Nicotiana tabacum
Nitab4.5_0000421g0060 Nicotiana tabacum
Nitab4.5_0002098g0040 Nicotiana tabacum
Nitab4.5_0005777g0010 Nicotiana tabacum
Nn1g05351 Nelumbo nucifera
Nn5g30117 Nelumbo nucifera
Oeu006703.1 Olea europaea
Oeu007224.1 Olea europaea
Oeu007226.1 Olea europaea
Oeu012923.1 Olea europaea
Oeu046295.1 Olea europaea
Os03g0191200 Oryza sativa ssp. japonica
Os11g0294400 Oryza sativa ssp. japonica
Os12g0233100 Oryza sativa ssp. japonica
Peaxi162Scf00041g00165 Petunia axillaris
Peaxi162Scf00286g00244 Petunia axillaris
Peaxi162Scf00378g00084 Petunia axillaris
PGSC0003DMG400006402 Solanum tuberosum
PGSC0003DMG400021617 Solanum tuberosum
Phvul.008G173300 Phaseolus vulgaris
Phvul.009G030900 Phaseolus vulgaris
Potri.002G096100 Populus trichocarpa
Potri.002G231400 Populus trichocarpa
Potri.005G165300 Populus trichocarpa
Potri.014G150900 Populus trichocarpa
Prupe.1G182000 Prunus persica
Prupe.1G516300 Prunus persica
Psat2g072240 Pisum sativum
Psat5g138480 Pisum sativum
PSO170G1174 Papaver somniferum
PSO210G1059 Papaver somniferum
PSO357G0625 Papaver somniferum
PSO447G0371 Papaver somniferum
PSO541G2691 Papaver somniferum
PSO781G0307 Papaver somniferum
QL10p046538 Quercus lobata
QL12p036715 Quercus lobata
RcHm_v2.0_Chr4g0408971 Rosa chinensis
RcHm_v2.0_Chr7g0239041 Rosa chinensis
Rhsim06G0082500 Rhododendron simsii
Sabra02G0075700 Salix brachista
Sabra02G0176600 Salix brachista
Sabra05G0124600 Salix brachista
Sabra15G0066300 Salix brachista
SalBow6G4869 Salvia bowleyana
Sc01g0000430 Simmondsia chinensis
Sc23g0000210 Simmondsia chinensis
Sed0000491 Sechium edule
Sed0010272 Sechium edule
Sed0020547 Sechium edule
Sed0023198 Sechium edule
Sed0024849 Sechium edule
SEGI_04164 Sequoiadendron giganteum
SEGI_20858 Sequoiadendron giganteum
SEGI_21405 Sequoiadendron giganteum
SGA_v2.0_scaffold31G12567 Striga asiatica
Solyc04g074080.3 Solanum lycopersicum
Sopen09g036400 Solanum pennellii
Sp1g19760 Schrenkiella parvula
Sp5g33290 Schrenkiella parvula
Sp6g08890 Schrenkiella parvula
TAR381G1126 Trochodendron aralioides
TAR625G1386 Trochodendron aralioides
TAR628G0302 Trochodendron aralioides
TAR633G1006 Trochodendron aralioides
THA.LOC104800151 Tarenaya hassleriana
THA.LOC104809714 Tarenaya hassleriana
THA.LOC104816761 Tarenaya hassleriana
Thecc.04G181700 Theobroma cacao
Thecc.08G107400 Theobroma cacao
Thhalv10008815m.g Eutrema salsugineum
Thhalv10019097m.g Eutrema salsugineum
Thhalv10028969m.g Eutrema salsugineum
TPR.G32999 Trifolium pratense
TPR.G34534 Trifolium pratense
TWI12G0499 Tripterygium wilfordii
TWI56G1046 Tripterygium wilfordii
unitig_578.g16200 Utricularia gibba
unitig_578.g16524 Utricularia gibba
unitig_8.g4838 Utricularia gibba
vmacro21275 Vaccinium macrocarpon
VMungo0647G0311 Vigna mungo
VMungo1309G0496 Vigna mungo
Zm00001eb006930 Zea mays
Zm00001eb133700 Zea mays
Zm00001eb199020 Zea mays
Zm00001eb401340 Zea mays
Zm00001eb411630 Zea mays

User provided reference genes

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