Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p19280 Brassica napus
A06p27660 Brassica napus
A08p23170 Brassica napus
Aa31LG4G16990 Aethionema arabicum
Aa31LG6G15280 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.818 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2434 Anthoceros agrestis
Actinidia28241 Actinidia chinensis
Actinidia28856 Actinidia chinensis
Actinidia36776 Actinidia chinensis
Ah.02g122640 Amaranthus hybridus
Ah.03g143910 Amaranthus hybridus
Ah.15g095420 Amaranthus hybridus
AL7G12260 Arabidopsis lyrata
Aqoxy3G01325 Aquilegia oxysepala
Aqoxy6G00753 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3ZI7DD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AT477B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KVGA6G Arachis hypogaea
AT3G48420 Arabidopsis thaliana
AT4G39970 Arabidopsis thaliana
ATR0782G193 Amborella trichopoda
ATR0824G037 Amborella trichopoda
Atru.chr3.1392 Acer truncatum
Atru.chr9.1051 Acer truncatum
Atru.chr9.1052 Acer truncatum
AUR62001263 Chenopodium quinoa
AUR62001988 Chenopodium quinoa
AUR62003816 Chenopodium quinoa
AUR62025747 Chenopodium quinoa
BcaB01g00813 Brassica carinata
BcaB01g00815 Brassica carinata
BcaB02g10654 Brassica carinata
BcaB03g12297 Brassica carinata
BcaC01g00336 Brassica carinata
BcaC01g02341 Brassica carinata
BcaC07g39324 Brassica carinata
BcaNung06062 Brassica carinata
BolC3t18913H Brassica oleracea
BolC3t20110H Brassica oleracea
BolC8t49969H Brassica oleracea
BraA06t25011Z Brassica rapa
BraA08t34275Z Brassica rapa
C03p66400 Brassica napus
C03p78590 Brassica napus
C08p23410 Brassica napus
CAN.G2293.1 Capsicum annuum
CAN.G422.6 Capsicum annuum
CAN.G472.45 Capsicum annuum
CANSAT01G0917 Cannabis sativa
CANSAT80G0417 Cannabis sativa
CARHR246710 Cardamine hirsuta
Carub.0005s1458 Capsella rubella
Carub.0007s0193 Capsella rubella
Ca_17751_v3 Cicer arietinum L.
CBR_g22462 Chara braunii
CBR_g3309 Chara braunii
Cc04_g10650 Coffea canephora
Cc07_g14870 Coffea canephora
CDE06G2530 Ceratophyllum demersum
CDE10G0595 Ceratophyllum demersum
Cfa002626 Carpinus fangiana
Cfa002628 Carpinus fangiana
Cfa018903 Carpinus fangiana
Ciclev10020897m.g Citrus clementina
Ciclev10026081m.g Citrus clementina
CiPaw.03G143700 Carya illinoinensis
CiPaw.04G102000 Carya illinoinensis
CiPaw.04G102500 Carya illinoinensis
CiPaw.11G013400 Carya illinoinensis
ClCG01G018680 Citrullus lanatus
ClCG06G017610 Citrullus lanatus
COL.COLO4_04553 Corchorus olitorius
COL.COLO4_27272 Corchorus olitorius
Cpa.g.sc337.4 Carica papaya
Cpa.g.sc4.47 Carica papaya
Cre03.g206550 Chlamydomonas reinhardtii
Cre14.g623000 Chlamydomonas reinhardtii
Cre16.g656650 Chlamydomonas reinhardtii
CsaV3_1G000830 Cucumis sativus L.
CsaV3_6G045340 Cucumis sativus L.
CSS0020534 Camellia sinensis var. sinensis
CSS0023597 Camellia sinensis var. sinensis
CSS0044980 Camellia sinensis var. sinensis
DCAR_006073 Daucus carota
DCAR_007373 Daucus carota
DCAR_009115 Daucus carota
DCAR_013582 Daucus carota
DCAR_014213 Daucus carota
DCAR_016425 Daucus carota
DCAR_019356 Daucus carota
Dinv13212 Davidia involucrata
Dinv38484 Davidia involucrata
Duzib147G0749 Durio zibethinus
Duzib205G0413 Durio zibethinus
ECA246G3621 Erigeron canadensis
ECA246G3674 Erigeron canadensis
EL10Ac6g15134 Beta vulgaris
EL10Ac7g18055 Beta vulgaris
Eucgr.H04753 Eucalyptus grandis
Eucgr.K02765 Eucalyptus grandis
FAN02G0536 Fragaria x ananassa
FAN04G2647 Fragaria x ananassa
FAN08G3291 Fragaria x ananassa
FAN13G1374 Fragaria x ananassa
FAN18G1738 Fragaria x ananassa
FAN19G0772 Fragaria x ananassa
FAN23G1062 Fragaria x ananassa
FAN26G1877 Fragaria x ananassa
FAN28G1339 Fragaria x ananassa
FvH4_1g20570 Fragaria vesca
FvH4_5g07070 Fragaria vesca
FvH4_6g52570 Fragaria vesca
Glyma.04G191700 Glycine max
Glyma.05G177000 Glycine max
Glyma.06G174200 Glycine max
Glyma.08G134300 Glycine max
Gohir.A02G128400 Gossypium hirsutum
Gohir.A09G244700 Gossypium hirsutum
Gohir.D03G039100 Gossypium hirsutum
Gohir.D09G245600 Gossypium hirsutum
Gorai.003G040300 Gossypium raimondii
Gorai.006G270000 Gossypium raimondii
GSVIVG01006045001 Vitis vinifera
GSVIVG01006627001 Vitis vinifera
GSVIVG01007572001 Vitis vinifera
HanXRQChr05g0156121 Helianthus annuus
HanXRQChr15g0469481 Helianthus annuus
Haze_24875 Corylus avellana
Haze_24884 Corylus avellana
Hma1.2p1_0225F.1_g094760 Hydrangea macrophylla
Hma1.2p1_0225F.1_g094770 Hydrangea macrophylla
Hma1.2p1_0308F.1_g120320 Hydrangea macrophylla
Hma1.2p1_3846F.1_g337700 Hydrangea macrophylla
HPP92_010508 Vanilla planifolia
HPP92_016783 Vanilla planifolia
Hund16300 Selenicereus undatus
Hund18531 Selenicereus undatus
Lalb_Chr07g0185241 Lupinus albus
Lalb_Chr11g0069751 Lupinus albus
Lj1g0007454 Lotus japonicus
Lj2C544T0 Lonicera japonica
Lj4g0001895 Lotus japonicus
Lj5A101T102 Lonicera japonica
Lsat_1_v5_gn_5_13101 Lactuca sativa
Lsat_1_v5_gn_5_34621 Lactuca sativa
Manes.06G113900 Manihot esculenta
Manes.13G093620 Manihot esculenta
Mapoly0010s0196 Marchantia polymorpha
Mapoly0019s0163 Marchantia polymorpha
Mapoly0082s0060 Marchantia polymorpha
MBI05_g34726_MAGBIO Magnolia biondii
MBI08_g18358_MAGBIO Magnolia biondii
MCO01G793 Micromonas commoda
MCO08G025 Micromonas commoda
MD03G1054200 Malus domestica
MD06G1160600 Malus domestica
MD14G1165800 Malus domestica
MD15G1322100 Malus domestica
Medtr3g075230 Medicago truncatula
Medtr8g090025 Medicago truncatula
MELO3C007747.2 Cucumis melo
MELO3C026235.2 Cucumis melo
Migut.H02348 Erythranthe guttata
Migut.O00226 Erythranthe guttata
MSTRG.11525 Avicennia marina
MSTRG.23352 Avicennia marina
Nitab4.5_0000743g0120 Nicotiana tabacum
Nitab4.5_0001360g0120 Nicotiana tabacum
Nitab4.5_0002531g0130 Nicotiana tabacum
Nitab4.5_0004570g0060 Nicotiana tabacum
Nn4g22488 Nelumbo nucifera
Nn5g30065 Nelumbo nucifera
Oeu001796.1 Olea europaea
Oeu053509.1 Olea europaea
Os03g0565200 Oryza sativa ssp. japonica
Os08g0485900 Oryza sativa ssp. japonica
Peaxi162Scf00089g00838 Petunia axillaris
Peaxi162Scf00212g00019 Petunia axillaris
PGR044G0360 Punica granatum
PGR102G1164 Punica granatum
PGSC0003DMG400015165 Solanum tuberosum
PGSC0003DMG400016162 Solanum tuberosum
Phvul.002G257400 Phaseolus vulgaris
Phvul.009G169900 Phaseolus vulgaris
Potri.007G095200 Populus trichocarpa
Potri.014G003916 Populus trichocarpa
Potri.015G088500 Populus trichocarpa
Pp3c10_2693 Physcomitrium patens
Pp3c5_20370 Physcomitrium patens
PRCOL_00005469 Prasinoderma coloniale
Prupe.5G159700 Prunus persica
Prupe.5G159800 Prunus persica
Prupe.6G190700 Prunus persica
Psat7g056040 Pisum sativum
PSO017G1659 Papaver somniferum
PSO478G4803 Papaver somniferum
PSO541G0145 Papaver somniferum
PSO781G0063 Papaver somniferum
PSO781G0075 Papaver somniferum
PSO781G0122 Papaver somniferum
PSO781G0145 Papaver somniferum
QL06p048556 Quercus lobata
QL10p005525 Quercus lobata
QL10p005573 Quercus lobata
RcHm_v2.0_Chr2g0112791 Rosa chinensis
RcHm_v2.0_Chr5g0027641 Rosa chinensis
RcHm_v2.0_Chr7g0191481 Rosa chinensis
Rhsim08G0012300 Rhododendron simsii
Rhsim12G0171100 Rhododendron simsii
Sabra07G0078400 Salix brachista
Sabra12G0066800 Salix brachista
Sabra12G0066900 Salix brachista
Sabra15G0111400 Salix brachista
SalBow3G0052 Salvia bowleyana
SalBow3G2438 Salvia bowleyana
SalBow5G1929 Salvia bowleyana
Sc07g0007310 Simmondsia chinensis
Sc22g0003900 Simmondsia chinensis
Sed0019566 Sechium edule
SEGI_18096 Sequoiadendron giganteum
SEGI_39395 Sequoiadendron giganteum
SGA_v2.0_scaffold237G43872 Striga asiatica
SGA_v2.0_scaffold54G19510 Striga asiatica
SGA_v2.0_scaffold90G27784 Striga asiatica
SMO352G0068 Selaginella moellendorffii
SMO367G1130 Selaginella moellendorffii
Solyc03g111610.3 Solanum lycopersicum
Solyc11g009020.2 Solanum lycopersicum
Sopen03g030730 Solanum pennellii
Sopen11g004790 Solanum pennellii
Sp5g13640 Schrenkiella parvula
Sp7g35900 Schrenkiella parvula
TAR381G0726 Trochodendron aralioides
TAR622G1430 Trochodendron aralioides
THA.LOC104807684 Tarenaya hassleriana
THA.LOC104821498 Tarenaya hassleriana
Thecc.01G098300 Theobroma cacao
Thecc.03G121000 Theobroma cacao
Thhalv10010540m.g Eutrema salsugineum
Thhalv10025764m.g Eutrema salsugineum
TPR.G38598 Trifolium pratense
TPR.G6197 Trifolium pratense
TWI09G0096 Tripterygium wilfordii
TWI23G0591 Tripterygium wilfordii
TWI74G0705 Tripterygium wilfordii
unitig_0.g1407 Utricularia gibba
unitig_736.g22348 Utricularia gibba
unitig_736.g22349 Utricularia gibba
vmacro16697 Vaccinium macrocarpon
vmacro18589 Vaccinium macrocarpon
VMungo0251G2610 Vigna mungo
VMungo1309G0913 Vigna mungo
Zm00001eb066520 Zea mays
Zm00001eb113090 Zea mays

User provided reference genes

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