Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p33070 Brassica napus
Aa31LG2G18270 Aethionema arabicum
Aa31LG2G2740 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3998 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2237 Anthoceros agrestis
Actinidia28793 Actinidia chinensis
Actinidia35718 Actinidia chinensis
Ah.07g205730 Amaranthus hybridus
Ah.07g205830 Amaranthus hybridus
AL5G13610 Arabidopsis lyrata
Aqoxy6G00032 Aquilegia oxysepala
Aqoxy6G00801 Aquilegia oxysepala
Aqoxy7G03451 Aquilegia oxysepala
Aqoxy7G03963 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6N32GT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GRL64C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SC6CUD Arachis hypogaea
AT2G03820 Arabidopsis thaliana
ATR0605G154 Amborella trichopoda
Atru.chr1.3154 Acer truncatum
AUR62001714 Chenopodium quinoa
AUR62004358 Chenopodium quinoa
AUR62006124 Chenopodium quinoa
AUR62009645 Chenopodium quinoa
AUR62020067 Chenopodium quinoa
AUR62036041 Chenopodium quinoa
AUR62039379 Chenopodium quinoa
BcaB01g01291 Brassica carinata
BcaB03g15300 Brassica carinata
BcaC08g46085 Brassica carinata
BcaC09g47951 Brassica carinata
BcaC09g47982 Brassica carinata
BolC1t05495H Brassica oleracea
BolC1t05496H Brassica oleracea
BolC1t05528H Brassica oleracea
BolC6t39026H Brassica oleracea
BraA01t04358Z Brassica rapa
BraA07t30935Z Brassica rapa
C06p39330 Brassica napus
CAN.G222.155 Capsicum annuum
CAN.G222.69 Capsicum annuum
CAN.G251.7 Capsicum annuum
CAN.G251.8 Capsicum annuum
CAN.G334.16 Capsicum annuum
CAN.G35.6 Capsicum annuum
CAN.G397.74 Capsicum annuum
CAN.G49.27 Capsicum annuum
CAN.G569.2 Capsicum annuum
CANSAT35G1376 Cannabis sativa
CARHR057990 Cardamine hirsuta
Carub.0002s1197 Capsella rubella
Carub.0005s0298 Capsella rubella
Ca_06291_v3 Cicer arietinum L.
Ca_06300_v3 Cicer arietinum L.
Ca_10750_v3 Cicer arietinum L.
Ca_17078_v3 Cicer arietinum L.
CBR_g22250 Chara braunii
Cc07_g13040 Coffea canephora
CDE03G0120 Ceratophyllum demersum
CDE06G1584 Ceratophyllum demersum
Cfa002549 Carpinus fangiana
Cfa016303 Carpinus fangiana
Cfa021842 Carpinus fangiana
Cfa023634 Carpinus fangiana
Ciclev10010249m.g Citrus clementina
Ciclev10011515m.g Citrus clementina
CiPaw.05G180200 Carya illinoinensis
CiPaw.09G212000 Carya illinoinensis
ClCG01G019420 Citrullus lanatus
ClCG09G022280 Citrullus lanatus
COL.COLO4_25178 Corchorus olitorius
COL.COLO4_25180 Corchorus olitorius
COL.COLO4_35706 Corchorus olitorius
Cre15.g640250 Chlamydomonas reinhardtii
Cre15.g640652 Chlamydomonas reinhardtii
CsaV3_6G046130 Cucumis sativus L.
CSS0021631 Camellia sinensis var. sinensis
DCAR_001976 Daucus carota
DCAR_006728 Daucus carota
Dinv05835 Davidia involucrata
Duzib187G0479 Durio zibethinus
Duzib187G1315 Durio zibethinus
Duzib264G0156 Durio zibethinus
ECA232G1503 Erigeron canadensis
ECA233G3127 Erigeron canadensis
ECA233G6065 Erigeron canadensis
EL10Ac7g15942 Beta vulgaris
EL10Ac8g20078 Beta vulgaris
EL10Ac8g20361 Beta vulgaris
Eucgr.I02619 Eucalyptus grandis
FAN11G0621 Fragaria x ananassa
FAN12G1395 Fragaria x ananassa
FAN17G0869 Fragaria x ananassa
FAN19G2495 Fragaria x ananassa
FAN22G0760 Fragaria x ananassa
FAN23G1351 Fragaria x ananassa
FAN28G2548 Fragaria x ananassa
FvH4_1g26190 Fragaria vesca
FvH4_3g30141 Fragaria vesca
FvH4_4g00390 Fragaria vesca
Glyma.11G213900 Glycine max
Glyma.17G081125 Glycine max
Glyma.18G042700 Glycine max
Gohir.A07G215450 Gossypium hirsutum
Gohir.A09G021300 Gossypium hirsutum
Gohir.D07G222400 Gossypium hirsutum
Gohir.D09G020700 Gossypium hirsutum
Gorai.001G256700 Gossypium raimondii
Gorai.006G024500 Gossypium raimondii
GSVIVG01026308001 Vitis vinifera
GSVIVG01033250001 Vitis vinifera
GSVIVG01033251001 Vitis vinifera
HanXRQChr05g0162181 Helianthus annuus
HanXRQChr14g0455561 Helianthus annuus
HanXRQChr15g0491751 Helianthus annuus
HanXRQChr16g0529981 Helianthus annuus
Haze_00061 Corylus avellana
Haze_00937 Corylus avellana
Haze_24773 Corylus avellana
Haze_27127 Corylus avellana
Hma1.2p1_0078F.1_g040110 Hydrangea macrophylla
Hma1.2p1_0158F.1_g069900 Hydrangea macrophylla
Hma1.2p1_0279F.1_g112720 Hydrangea macrophylla
HPP92_003151 Vanilla planifolia
Lalb_Chr10g0104171 Lupinus albus
Lj1g0014452 Lotus japonicus
Lj1g0015796 Lotus japonicus
Lj2g0026250 Lotus japonicus
Lj2P514T26 Lonicera japonica
Lj3g0022828 Lotus japonicus
Lj4C256T1 Lonicera japonica
Lsat_1_v5_gn_6_55221 Lactuca sativa
Lsat_1_v5_gn_9_108800 Lactuca sativa
Lsat_1_v5_gn_9_108820 Lactuca sativa
Manes.01G121600 Manihot esculenta
Mapoly0067s0022 Marchantia polymorpha
MBI04_g22934_MAGBIO Magnolia biondii
MCO08G120 Micromonas commoda
Medtr0001s0160 Medicago truncatula
Medtr3g064880 Medicago truncatula
Medtr4g069000 Medicago truncatula
Medtr4g107030 Medicago truncatula
Medtr5g006990 Medicago truncatula
Medtr5g008620 Medicago truncatula
Medtr5g011470 Medicago truncatula
Medtr5g011640 Medicago truncatula
Medtr5g089690 Medicago truncatula
Medtr5g090030 Medicago truncatula
Medtr5g090460 Medicago truncatula
Medtr5g091160 Medicago truncatula
Medtr5g091490 Medicago truncatula
Medtr5g091890 Medicago truncatula
Medtr5g092540 Medicago truncatula
Medtr5g092980 Medicago truncatula
Medtr8g442440 Medicago truncatula
MELO3C003804.2 Cucumis melo
MELO3C007816.2 Cucumis melo
Migut.F00983 Erythranthe guttata
MSTRG.17510 Avicennia marina
MSTRG.27 Avicennia marina
MSTRG.8548 Avicennia marina
Nitab4.5_0001863g0040 Nicotiana tabacum
Nitab4.5_0002158g0240 Nicotiana tabacum
Nitab4.5_0002465g0040 Nicotiana tabacum
Nitab4.5_0007409g0020 Nicotiana tabacum
Nitab4.5_0012794g0020 Nicotiana tabacum
Nn1g08047 Nelumbo nucifera
Nn1g08048 Nelumbo nucifera
Oeu038114.2 Olea europaea
Oeu061059.1 Olea europaea
Os05g0333000 Oryza sativa ssp. japonica
Os10g0573900 Oryza sativa ssp. japonica
Peaxi162Scf00078g00146 Petunia axillaris
Peaxi162Scf00152g00095 Petunia axillaris
Peaxi162Scf00325g00093 Petunia axillaris
Peaxi162Scf00334g00102 Petunia axillaris
Peaxi162Scf00334g00113 Petunia axillaris
Peaxi162Scf00357g00048 Petunia axillaris
PGR142G0804 Punica granatum
PGSC0003DMG400013259 Solanum tuberosum
PGSC0003DMG400016281 Solanum tuberosum
Phvul.010G132700 Phaseolus vulgaris
Potri.004G085700 Populus trichocarpa
Potri.004G121500 Populus trichocarpa
Potri.017G137500 Populus trichocarpa
Pp3c19_15670 Physcomitrium patens
Pp3c22_17820 Physcomitrium patens
PRCOL_00004482 Prasinoderma coloniale
Prupe.4G217800 Prunus persica
Prupe.4G273200 Prunus persica
Psat2g014720 Pisum sativum
Psat2g014800 Pisum sativum
Psat2g014840 Pisum sativum
Psat2g014920 Pisum sativum
Psat2g014960 Pisum sativum
Psat2g015040 Pisum sativum
Psat5g119160 Pisum sativum
PSO063G1548 Papaver somniferum
PSO063G5203 Papaver somniferum
PSO063G7148 Papaver somniferum
PSO170G1138 Papaver somniferum
QL05p081293 Quercus lobata
RcHm_v2.0_Chr3g0485681 Rosa chinensis
RcHm_v2.0_Chr3g0485701 Rosa chinensis
RcHm_v2.0_Chr4g0385341 Rosa chinensis
Rhsim05G0055000 Rhododendron simsii
RhsimUnG0229600 Rhododendron simsii
Sabra04G0055000 Salix brachista
SalBow1G5695 Salvia bowleyana
SalBow2G2895 Salvia bowleyana
SalBow2G2903 Salvia bowleyana
SalBow7G4533 Salvia bowleyana
Sc06g0008210 Simmondsia chinensis
Sc12g0001790 Simmondsia chinensis
Sc12g0001800 Simmondsia chinensis
Sed0001234 Sechium edule
Sed0010163 Sechium edule
Sed0017630 Sechium edule
Sed0023928 Sechium edule
Sed0026849 Sechium edule
SEGI_39799 Sequoiadendron giganteum
SGA_v2.0_scaffold131G34401 Striga asiatica
SGA_v2.0_scaffold32G13231 Striga asiatica
SGA_v2.0_scaffold70G23428 Striga asiatica
SHI18121 Sapria himalayana
SMO117G0053 Selaginella moellendorffii
Solyc06g053800.3 Solanum lycopersicum
Solyc11g011780.3 Solanum lycopersicum
Sopen06g018920 Solanum pennellii
Sopen11g006630 Solanum pennellii
Sp5g21090 Schrenkiella parvula
TAR622G0094 Trochodendron aralioides
TAR622G1128 Trochodendron aralioides
TAR623G0802 Trochodendron aralioides
THA.LOC104800459 Tarenaya hassleriana
THA.LOC104805642 Tarenaya hassleriana
THA.LOC104805649 Tarenaya hassleriana
THA.LOC104805650 Tarenaya hassleriana
THA.LOC104805980 Tarenaya hassleriana
Thecc.04G074600 Theobroma cacao
Thhalv10019828m.g Eutrema salsugineum
TPR.G12626 Trifolium pratense
TPR.G22248 Trifolium pratense
TPR.G26692 Trifolium pratense
TPR.G30935 Trifolium pratense
TPR.G37469 Trifolium pratense
TPR.G574 Trifolium pratense
TPR.G7222 Trifolium pratense
TWI12G0816 Tripterygium wilfordii
TWI75G0358 Tripterygium wilfordii
unitig_749.g14303 Utricularia gibba
vmacro18145 Vaccinium macrocarpon
vmacro18519 Vaccinium macrocarpon
VMungo0331G0032 Vigna mungo
VMungo0331G0784 Vigna mungo
Zm00001eb024450 Zea mays
Zm00001eb390490 Zea mays

User provided reference genes

Program Settings