Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p49390 Brassica napus
A04p10120 Brassica napus
A08p12010 Brassica napus
Aa31LG10G6270 Aethionema arabicum
Aa31LG5G17480 Aethionema arabicum
Aa31LG8G3730 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.204 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.340 Anthoceros agrestis
Actinidia00017 Actinidia chinensis
Actinidia14298 Actinidia chinensis
Actinidia18721 Actinidia chinensis
Actinidia18992 Actinidia chinensis
Actinidia18993 Actinidia chinensis
Actinidia18996 Actinidia chinensis
Actinidia26774 Actinidia chinensis
Actinidia40277 Actinidia chinensis
Ah.04g153570 Amaranthus hybridus
Ah.13g074620 Amaranthus hybridus
AL159U10020 Arabidopsis lyrata
AL3G18030 Arabidopsis lyrata
AL7G39400 Arabidopsis lyrata
AL7G47080 Arabidopsis lyrata
Aqoxy2G02966 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6S0TFF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7RK78I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IUH9DZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L0QAVJ Arachis hypogaea
AT3G06910 Arabidopsis thaliana
AT4G00690 Arabidopsis thaliana
AT4G15880 Arabidopsis thaliana
ATR0796G180 Amborella trichopoda
Atru.chr3.1239 Acer truncatum
Atru.chr4.2855 Acer truncatum
AUR62040372 Chenopodium quinoa
AUR62041504 Chenopodium quinoa
BcaB04g18335 Brassica carinata
BcaB04g21301 Brassica carinata
BcaB06g27008 Brassica carinata
BcaC02g09510 Brassica carinata
BcaC05g29771 Brassica carinata
BcaC06g32970 Brassica carinata
BcaC06g33440 Brassica carinata
BcaC07g37936 Brassica carinata
BcaC09g47927 Brassica carinata
BNapus_Darmor_BZH_scaffold_117p00160 Brassica napus
BolC1t05578H Brassica oleracea
BolC1t05579H Brassica oleracea
BolC4t25940H Brassica oleracea
BolC7t45274H Brassica oleracea
BolC8t48321H Brassica oleracea
BraA01t04407Z Brassica rapa
BraA03t14040Z Brassica rapa
BraA04t16673Z Brassica rapa
BraA08t33193Z Brassica rapa
C04p43590 Brassica napus
C07p47470 Brassica napus
CAN.G129.28 Capsicum annuum
CAN.G484.35 Capsicum annuum
CANSAT78G0264 Cannabis sativa
CARHR081520 Cardamine hirsuta
CARHR180480 Cardamine hirsuta
CARHR290390 Cardamine hirsuta
CARHR290400 Cardamine hirsuta
Carub.0003s0643 Capsella rubella
Carub.0007s2578 Capsella rubella
Carub.0007s3326 Capsella rubella
Ca_01932_v3 Cicer arietinum L.
Ca_21490_v3 Cicer arietinum L.
CBR_g12852 Chara braunii
CBR_g38924 Chara braunii
Cc03_g01820 Coffea canephora
CDE02G3750 Ceratophyllum demersum
CDE05G1647 Ceratophyllum demersum
CDE09G1400 Ceratophyllum demersum
Cfa015393 Carpinus fangiana
Cfa025500 Carpinus fangiana
Ciclev10004735m.g Citrus clementina
Ciclev10020105m.g Citrus clementina
Ciclev10029037m.g Citrus clementina
Ciclev10031514m.g Citrus clementina
CiPaw.01G147900 Carya illinoinensis
CiPaw.02G082600 Carya illinoinensis
ClCG06G005110 Citrullus lanatus
COL.COLO4_13861 Corchorus olitorius
COL.COLO4_16855 Corchorus olitorius
Cpa.g.sc16.178 Carica papaya
Cre02.g142607 Chlamydomonas reinhardtii
Cre02.g143467 Chlamydomonas reinhardtii
Cre06.g296350 Chlamydomonas reinhardtii
Cre13.g570450 Chlamydomonas reinhardtii
Cre16.g692600 Chlamydomonas reinhardtii
CsaV3_6G022290 Cucumis sativus L.
CSS0003276 Camellia sinensis var. sinensis
CSS0011099 Camellia sinensis var. sinensis
DCAR_005129 Daucus carota
DCAR_005130 Daucus carota
DCAR_023286 Daucus carota
DCAR_028520 Daucus carota
DCAR_030525 Daucus carota
Dinv29750 Davidia involucrata
Dinv44376 Davidia involucrata
Duzib151G0387 Durio zibethinus
Duzib212G0172 Durio zibethinus
Duzib212G0237 Durio zibethinus
Duzib212G0645 Durio zibethinus
ECA240G4557 Erigeron canadensis
ECA246G1134 Erigeron canadensis
ECA247G0353 Erigeron canadensis
EL10Ac3g06606 Beta vulgaris
Eucgr.B01592 Eucalyptus grandis
Eucgr.H03388 Eucalyptus grandis
FAN07G0222 Fragaria x ananassa
FAN12G2797 Fragaria x ananassa
FAN12G3880 Fragaria x ananassa
FAN17G1452 Fragaria x ananassa
FvH4_4g18241 Fragaria vesca
Glyma.07G246900 Glycine max
Glyma.09G044400 Glycine max
Glyma.15G148700 Glycine max
Glyma.17G027100 Glycine max
Gohir.A01G032900 Gossypium hirsutum
Gohir.A10G164400 Gossypium hirsutum
Gohir.D01G023484 Gossypium hirsutum
Gohir.D06G136300 Gossypium hirsutum
Gohir.D09G033125 Gossypium hirsutum
Gohir.D10G170600 Gossypium hirsutum
Gohir.D10G181575 Gossypium hirsutum
Gorai.002G028400 Gossypium raimondii
Gorai.002G184800 Gossypium raimondii
Gorai.005G015200 Gossypium raimondii
Gorai.010G158500 Gossypium raimondii
Gorai.011G190600 Gossypium raimondii
Gorai.011G203100 Gossypium raimondii
GSVIVG01017729001 Vitis vinifera
HanXRQChr03g0081551 Helianthus annuus
HanXRQChr06g0173971 Helianthus annuus
HanXRQChr17g0538731 Helianthus annuus
Haze_01193 Corylus avellana
Hma1.2p1_1185F.1_g265060 Hydrangea macrophylla
HPP92_000409 Vanilla planifolia
HPP92_013719 Vanilla planifolia
Hund20545 Selenicereus undatus
Hund20546 Selenicereus undatus
Lalb_Chr07g0177741 Lupinus albus
Lalb_Chr18g0051661 Lupinus albus
Lalb_Chr20g0114601 Lupinus albus
Lj3A817T82 Lonicera japonica
Lj3A820G55 Lonicera japonica
Lj3A820G56 Lonicera japonica
Lj4g0016775 Lotus japonicus
Lj6A677T76 Lonicera japonica
Lj6g0011426 Lotus japonicus
Lsat_1_v5_gn_3_24681 Lactuca sativa
Lsat_1_v5_gn_5_62580 Lactuca sativa
Manes.03G196000 Manihot esculenta
Manes.15G012000 Manihot esculenta
Mapoly0071s0122 Marchantia polymorpha
MBI18_g06865_MAGBIO Magnolia biondii
MBI19_g13202_MAGBIO Magnolia biondii
MCO01G225 Micromonas commoda
MCO11G485 Micromonas commoda
MD13G1167800 Malus domestica
MD16G1167200 Malus domestica
Medtr2g436660 Medicago truncatula
Medtr4g119970 Medicago truncatula
MELO3C021328.2 Cucumis melo
Migut.G00153 Erythranthe guttata
Migut.N00090 Erythranthe guttata
MSTRG.10098 Avicennia marina
MSTRG.3909 Avicennia marina
Nitab4.5_0000570g0140 Nicotiana tabacum
Nitab4.5_0000960g0070 Nicotiana tabacum
Nitab4.5_0003466g0130 Nicotiana tabacum
Nitab4.5_0008499g0020 Nicotiana tabacum
Nn3g19338 Nelumbo nucifera
Nn3g19339 Nelumbo nucifera
Nn3g19359 Nelumbo nucifera
Nn3g19361 Nelumbo nucifera
Nn3g19362 Nelumbo nucifera
Nn3g21459 Nelumbo nucifera
Nn4g25817 Nelumbo nucifera
Oeu035678.1 Olea europaea
Os01g0355900 Oryza sativa ssp. japonica
Os03g0344300 Oryza sativa ssp. japonica
Os03g0410100 Oryza sativa ssp. japonica
Peaxi162Scf00498g00738 Petunia axillaris
Peaxi162Scf00646g00224 Petunia axillaris
PGR031G1085 Punica granatum
PGSC0003DMG400004634 Solanum tuberosum
Phvul.003G106100 Phaseolus vulgaris
Phvul.009G248500 Phaseolus vulgaris
Potri.008G221500 Populus trichocarpa
Potri.010G013700 Populus trichocarpa
Pp3c22_12640 Physcomitrium patens
Pp3c23_850 Physcomitrium patens
PRCOL_00000359 Prasinoderma coloniale
PRCOL_00006212 Prasinoderma coloniale
Prupe.1G135200 Prunus persica
Psat1g154240 Pisum sativum
Psat4g027320 Pisum sativum
PSO017G4448 Papaver somniferum
PSO170G1158 Papaver somniferum
PSO170G5462 Papaver somniferum
PSO210G1023 Papaver somniferum
PSO210G3358 Papaver somniferum
PSO675G4138 Papaver somniferum
PSO832G1526 Papaver somniferum
PSO832G1698 Papaver somniferum
QL06p009035 Quercus lobata
QL11p014710 Quercus lobata
RcHm_v2.0_Chr4g0422391 Rosa chinensis
Rhsim02G0008600 Rhododendron simsii
Rhsim04G0223300 Rhododendron simsii
Rhsim09G0006900 Rhododendron simsii
Sabra08G0152600 Salix brachista
Sabra10G0008800 Salix brachista
Sc13g0003440 Simmondsia chinensis
Sed0000099 Sechium edule
Sed0005683 Sechium edule
SEGI_08688 Sequoiadendron giganteum
SEGI_27665 Sequoiadendron giganteum
SEGI_37885 Sequoiadendron giganteum
SGA_v2.0_scaffold18G08302 Striga asiatica
SGA_v2.0_scaffold428G51524 Striga asiatica
SGA_v2.0_scaffold67G22629 Striga asiatica
SMO115G0256 Selaginella moellendorffii
SMO340G0224 Selaginella moellendorffii
Solyc01g066830.3 Solanum lycopersicum
Solyc12g099530.3 Solanum lycopersicum
Sopen01g028430 Solanum pennellii
Sopen12g034210 Solanum pennellii
Sp3g05860 Schrenkiella parvula
Sp7g06040 Schrenkiella parvula
Sp7g14290 Schrenkiella parvula
TAR365G0991 Trochodendron aralioides
TAR626G0662 Trochodendron aralioides
TAR633G1808 Trochodendron aralioides
TAR636G2312 Trochodendron aralioides
THA.LOC104820271 Tarenaya hassleriana
THA.LOC104827344 Tarenaya hassleriana
Thecc.04G285500 Theobroma cacao
Thhalv10005561m.g Eutrema salsugineum
Thhalv10020659m.g Eutrema salsugineum
Thhalv10025061m.g Eutrema salsugineum
TPR.G23006 Trifolium pratense
TPR.G3166 Trifolium pratense
TWI09G0423 Tripterygium wilfordii
TWI09G0727 Tripterygium wilfordii
TWI53G0486 Tripterygium wilfordii
TWI73G0200 Tripterygium wilfordii
unitig_26.g10544 Utricularia gibba
unitig_32.g11872 Utricularia gibba
vmacro08160 Vaccinium macrocarpon
vmacro15229 Vaccinium macrocarpon
VMungo1215G3056 Vigna mungo
VMungo1309G0779 Vigna mungo
Zm00001eb016540 Zea mays
Zm00001eb111330 Zea mays
Zm00001eb131540 Zea mays
Zm00001eb341180 Zea mays

User provided reference genes

Program Settings