Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p41510 Brassica napus
A05p29140 Brassica napus
A07p02460 Brassica napus
A09p11780 Brassica napus
Aa31LG8G6680 Aethionema arabicum
Aa31sc61G50 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2345 Anthoceros agrestis
Actinidia04345 Actinidia chinensis
Actinidia08345 Actinidia chinensis
Ah.01g012760 Amaranthus hybridus
AL3G33620 Arabidopsis lyrata
AL3G51510 Arabidopsis lyrata
Aqoxy3G04314 Aquilegia oxysepala
Aqoxy6G01141 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.454AC4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4YR43N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XP1AI4 Arachis hypogaea
AT2G18245 Arabidopsis thaliana
AT3G19970 Arabidopsis thaliana
ATR0568G069 Amborella trichopoda
ATR0618G294 Amborella trichopoda
ATR0807G185 Amborella trichopoda
Atru.chr11.1241 Acer truncatum
Atru.chr3.608 Acer truncatum
Atru.chr3.609 Acer truncatum
AUR62004072 Chenopodium quinoa
AUR62007585 Chenopodium quinoa
AUR62017732 Chenopodium quinoa
AUR62032949 Chenopodium quinoa
AUR62033008 Chenopodium quinoa
AUR62042484 Chenopodium quinoa
BcaB06g26066 Brassica carinata
BcaB07g31678 Brassica carinata
BcaC04g22918 Brassica carinata
BcaC04g22920 Brassica carinata
BcaC05g28386 Brassica carinata
BcaC06g36390 Brassica carinata
BolC3t17367H Brassica oleracea
BolC5t33188H Brassica oleracea
BolC9t54281H Brassica oleracea
BraA03t13305Z Brassica rapa
BraA05t21801Z Brassica rapa
BraA07t28042Z Brassica rapa
BraA09t36826Z Brassica rapa
C03p50830 Brassica napus
C05p44540 Brassica napus
C09p13890 Brassica napus
CAN.G1374.16 Capsicum annuum
CAN.G358.63 Capsicum annuum
CAN.G472.31 Capsicum annuum
CANSAT01G2762 Cannabis sativa
CANSAT78G0826 Cannabis sativa
CARHR095500 Cardamine hirsuta
CARHR108780 Cardamine hirsuta
Carub.0003s1987 Capsella rubella
Carub.0003s3242 Capsella rubella
Ca_11260_v3 Cicer arietinum L.
Ca_24864_v3 Cicer arietinum L.
Ca_24865_v3 Cicer arietinum L.
Ca_24866_v3 Cicer arietinum L.
CBR_g28544 Chara braunii
Cc00_g09980 Coffea canephora
Cc07_g09730 Coffea canephora
Cc07_g19130 Coffea canephora
CDE05G3560 Ceratophyllum demersum
Cfa004330 Carpinus fangiana
Cfa008777 Carpinus fangiana
Cfa022133 Carpinus fangiana
Ciclev10025809m.g Citrus clementina
Ciclev10031553m.g Citrus clementina
CiPaw.02G019400 Carya illinoinensis
CiPaw.05G172200 Carya illinoinensis
ClCG01G008080 Citrullus lanatus
ClCG01G019670 Citrullus lanatus
COL.COLO4_33108 Corchorus olitorius
Cpa.g.sc6.138 Carica papaya
Cpa.g.sc60.93 Carica papaya
Cre08.g381650 Chlamydomonas reinhardtii
CsaV3_5G020750 Cucumis sativus L.
CsaV3_6G046350 Cucumis sativus L.
CSS0024357 Camellia sinensis var. sinensis
CSS0041408 Camellia sinensis var. sinensis
DCAR_002606 Daucus carota
DCAR_025952 Daucus carota
DCAR_030357 Daucus carota
Dinv39999 Davidia involucrata
Duzib187G1601 Durio zibethinus
Duzib248G0110 Durio zibethinus
Duzib264G0997 Durio zibethinus
ECA232G1668 Erigeron canadensis
ECA246G5028 Erigeron canadensis
EL10Ac6g15540 Beta vulgaris
EL10Ac9g22982 Beta vulgaris
Eucgr.G02588 Eucalyptus grandis
Eucgr.I02424 Eucalyptus grandis
FAN03G2715 Fragaria x ananassa
FAN06G0533 Fragaria x ananassa
FAN06G4016 Fragaria x ananassa
FAN07G1501 Fragaria x ananassa
FAN17G1320 Fragaria x ananassa
FAN23G0209 Fragaria x ananassa
FAN28G1869 Fragaria x ananassa
FvH4_1g13010 Fragaria vesca
FvH4_4g37150 Fragaria vesca
FvH4_7g21480 Fragaria vesca
Glyma.01G173000 Glycine max
Glyma.10G286500 Glycine max
Glyma.11G070100 Glycine max
Glyma.20G102600 Glycine max
Gohir.A03G166100 Gossypium hirsutum
Gohir.A04G109432 Gossypium hirsutum
Gohir.A05G354800 Gossypium hirsutum
Gohir.A08G113900 Gossypium hirsutum
Gohir.A10G095900 Gossypium hirsutum
Gohir.A11G043100 Gossypium hirsutum
Gohir.D02G189500 Gossypium hirsutum
Gohir.D04G149000 Gossypium hirsutum
Gohir.D10G092200 Gossypium hirsutum
Gohir.D11G046600 Gossypium hirsutum
Gorai.005G212200 Gossypium raimondii
Gorai.007G050100 Gossypium raimondii
Gorai.011G101200 Gossypium raimondii
Gorai.012G135500 Gossypium raimondii
GSVIVG01018935001 Vitis vinifera
GSVIVG01034414001 Vitis vinifera
HanXRQChr06g0171701 Helianthus annuus
HanXRQChr09g0261351 Helianthus annuus
HanXRQChr17g0541061 Helianthus annuus
Haze_11789 Corylus avellana
Haze_15076 Corylus avellana
Hma1.2p1_0044F.1_g026300 Hydrangea macrophylla
Hma1.2p1_0789F.1_g218240 Hydrangea macrophylla
HPP92_004904 Vanilla planifolia
HPP92_021822 Vanilla planifolia
Hund08635 Selenicereus undatus
Lalb_Chr06g0163951 Lupinus albus
Lalb_Chr09g0333441 Lupinus albus
Lj2g0001027 Lotus japonicus
Lj3C846T17 Lonicera japonica
Lj4A203T44 Lonicera japonica
Lj5g0019717 Lotus japonicus
Lj6A713T76 Lonicera japonica
Lj6C708T13 Lonicera japonica
LjContig00408g0023048 Lotus japonicus
Lsat_1_v5_gn_3_34501 Lactuca sativa
Lsat_1_v5_gn_4_148220 Lactuca sativa
Manes.01G136900 Manihot esculenta
Manes.04G162900 Manihot esculenta
Manes.11G001501 Manihot esculenta
Manes.11G001601 Manihot esculenta
Mapoly0019s0001 Marchantia polymorpha
MBI06_g27488_MAGBIO Magnolia biondii
MBI08_g08976_MAGBIO Magnolia biondii
MBI08_g17992_MAGBIO Magnolia biondii
MBI10_g18268_MAGBIO Magnolia biondii
MCO02G115 Micromonas commoda
MD02G1144600 Malus domestica
MD13G1003100 Malus domestica
MD15G1258300 Malus domestica
Medtr1g114600 Medicago truncatula
Medtr5g020710 Medicago truncatula
MELO3C005068.2 Cucumis melo
MELO3C007836.2 Cucumis melo
Migut.E00681 Erythranthe guttata
Migut.H00961 Erythranthe guttata
MSTRG.2069 Avicennia marina
MSTRG.23510 Avicennia marina
Nitab4.5_0000178g0260 Nicotiana tabacum
Nitab4.5_0000178g0270 Nicotiana tabacum
Nitab4.5_0000486g0230 Nicotiana tabacum
Nitab4.5_0001916g0060 Nicotiana tabacum
Nitab4.5_0007490g0060 Nicotiana tabacum
Nitab4.5_0008280g0010 Nicotiana tabacum
Nn1g05802 Nelumbo nucifera
Nn3g18584 Nelumbo nucifera
Nn4g22228 Nelumbo nucifera
Nn4g25144 Nelumbo nucifera
Nn6g34705 Nelumbo nucifera
Oeu006330.1 Olea europaea
Oeu023819.1 Olea europaea
Oeu027931.1 Olea europaea
Os02g0133900 Oryza sativa ssp. japonica
Os06g0730300 Oryza sativa ssp. japonica
Peaxi162Scf00129g00237 Petunia axillaris
Peaxi162Scf00366g00534 Petunia axillaris
PGR119G0449 Punica granatum
PGR142G2512 Punica granatum
PGSC0003DMG400002618 Solanum tuberosum
PGSC0003DMG400003604 Solanum tuberosum
PGSC0003DMG400017794 Solanum tuberosum
Phvul.002G032300 Phaseolus vulgaris
Phvul.007G014300 Phaseolus vulgaris
Potri.005G089000 Populus trichocarpa
Potri.007G023000 Populus trichocarpa
Potri.007G075400 Populus trichocarpa
Pp3c20_16960 Physcomitrium patens
Pp3c23_11600 Physcomitrium patens
Pp3c23_5980 Physcomitrium patens
Pp3c24_12450 Physcomitrium patens
PRCOL_00001555 Prasinoderma coloniale
Prupe.1G349300 Prunus persica
Prupe.7G157000 Prunus persica
Psat2g158320 Pisum sativum
Psat6g234120 Pisum sativum
PSO063G2536 Papaver somniferum
PSO731G0123 Papaver somniferum
PSO764G0346 Papaver somniferum
PSO782G2004 Papaver somniferum
QL03p045458 Quercus lobata
QL06p046608 Quercus lobata
RcHm_v2.0_Chr1g0365791 Rosa chinensis
RcHm_v2.0_Chr2g0101161 Rosa chinensis
RcHm_v2.0_Chr4g0409431 Rosa chinensis
RcHm_v2.0_Chr4g0409441 Rosa chinensis
RcHm_v2.0_Chr4g0446951 Rosa chinensis
Rhsim08G0118700 Rhododendron simsii
Rhsim12G0089300 Rhododendron simsii
Sabra05G0073200 Salix brachista
Sabra07G0020000 Salix brachista
Sabra07G0063700 Salix brachista
SalBow1G7718 Salvia bowleyana
SalBow2G0240 Salvia bowleyana
Sc10g0006740 Simmondsia chinensis
Sc16g0002650 Simmondsia chinensis
Sed0012946 Sechium edule
Sed0025954 Sechium edule
SEGI_20250 Sequoiadendron giganteum
SEGI_21614 Sequoiadendron giganteum
SGA_v2.0_scaffold211G42118 Striga asiatica
SGA_v2.0_scaffold65G22223 Striga asiatica
SHI21210 Sapria himalayana
SHI22830 Sapria himalayana
SMO115G0355 Selaginella moellendorffii
SMO142G0067 Selaginella moellendorffii
Solyc02g020890.4 Solanum lycopersicum
Solyc02g085080.4 Solanum lycopersicum
Sopen02g004920 Solanum pennellii
Sopen02g029770 Solanum pennellii
Sp3g17990 Schrenkiella parvula
Sp3g31660 Schrenkiella parvula
TAR622G0457 Trochodendron aralioides
TAR625G0131 Trochodendron aralioides
THA.LOC104801595 Tarenaya hassleriana
THA.LOC104807844 Tarenaya hassleriana
Thecc.01G032700 Theobroma cacao
Thecc.02G154700 Theobroma cacao
Thhalv10020748m.g Eutrema salsugineum
Thhalv10022713m.g Eutrema salsugineum
Thhalv10023063m.g Eutrema salsugineum
TPR.G2372 Trifolium pratense
TPR.G4049 Trifolium pratense
TWI09G1608 Tripterygium wilfordii
TWI53G1397 Tripterygium wilfordii
TWI74G1069 Tripterygium wilfordii
unitig_749.g13341 Utricularia gibba
vmacro15996 Vaccinium macrocarpon
vmacro17820 Vaccinium macrocarpon
vmacro17821 Vaccinium macrocarpon
VMungo0720G0400 Vigna mungo
VMungo1215G2253 Vigna mungo
Zm00001eb231500 Zea mays
Zm00001eb271760 Zea mays

User provided reference genes

Program Settings