Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p05770 Brassica napus
A03p61500 Brassica napus
A08p18100 Brassica napus
A09p55510 Brassica napus
Aa31sc329G20 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1297 Anthoceros agrestis
Actinidia09399 Actinidia chinensis
Actinidia13291 Actinidia chinensis
Actinidia15713 Actinidia chinensis
Actinidia20335 Actinidia chinensis
Ah.12g063240 Amaranthus hybridus
Ah.12g063250 Amaranthus hybridus
AL4G17270 Arabidopsis lyrata
AL7G19150 Arabidopsis lyrata
Aqoxy7G01832 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1EE9E0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1P1QHD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.293L9L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2N625L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.36S5A5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.43249I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8T4WXA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BYLA1M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H7M7QR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.INM0KP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K5A3DB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MD8FRP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MXVN5B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N787F7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SM9D0V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V5A5TZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V836PL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W4IR9Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YKEN36 Arachis hypogaea
AT2G25670 Arabidopsis thaliana
AT4G32610 Arabidopsis thaliana
ATR0037G044 Amborella trichopoda
Atru.chr7.1291 Acer truncatum
Atru.chr7.2321 Acer truncatum
Atru.chr7.2322 Acer truncatum
AUR62024832 Chenopodium quinoa
AUR62032385 Chenopodium quinoa
BcaB03g12754 Brassica carinata
BcaC01g01010 Brassica carinata
BcaC07g40851 Brassica carinata
BcaC09g52052 Brassica carinata
BcaC09g52073 Brassica carinata
BcaNung03596 Brassica carinata
BcaNung04518 Brassica carinata
BolC1t00630H Brassica oleracea
BolC3t21024H Brassica oleracea
BolC7t46373H Brassica oleracea
BolC8t51421H Brassica oleracea
BraA01t00546Z Brassica rapa
BraA03t15194Z Brassica rapa
BraA08t33762Z Brassica rapa
BraA09t40953Z Brassica rapa
C01p06340 Brassica napus
C03p87230 Brassica napus
C07p59270 Brassica napus
C08p38490 Brassica napus
CAN.G21.16 Capsicum annuum
CAN.G21.17 Capsicum annuum
CAN.G21.18 Capsicum annuum
CAN.G21.19 Capsicum annuum
CAN.G21.20 Capsicum annuum
CAN.G29708.1 Capsicum annuum
CANSAT56G2101 Cannabis sativa
CARHR115580 Cardamine hirsuta
Carub.0004s0546 Capsella rubella
Carub.0007s0793 Capsella rubella
Ca_06867_v3 Cicer arietinum L.
Ca_06868_v3 Cicer arietinum L.
Ca_15695_v3 Cicer arietinum L.
CBR_g29849 Chara braunii
Cc06_g09240 Coffea canephora
Cc06_g09280 Coffea canephora
CDE07G1242 Ceratophyllum demersum
Ciclev10008908m.g Citrus clementina
Ciclev10008958m.g Citrus clementina
CiPaw.03G235600 Carya illinoinensis
CiPaw.07G217400 Carya illinoinensis
CiPaw.08G015900 Carya illinoinensis
ClCG05G017230 Citrullus lanatus
COL.COLO4_24069 Corchorus olitorius
COL.COLO4_34938 Corchorus olitorius
Cpa.g.sc23.148 Carica papaya
Cpa.g.sc23.149 Carica papaya
CsaV3_3G046710 Cucumis sativus L.
CSS0009468 Camellia sinensis var. sinensis
CSS0035831 Camellia sinensis var. sinensis
CSS0041585 Camellia sinensis var. sinensis
CSS0042317 Camellia sinensis var. sinensis
CSS0048428 Camellia sinensis var. sinensis
DCAR_023980 Daucus carota
Dinv30216 Davidia involucrata
Dinv35879 Davidia involucrata
Dinv36599 Davidia involucrata
Dinv41572 Davidia involucrata
Duzib150G1573 Durio zibethinus
Duzib150G1692 Durio zibethinus
Duzib168G0558 Durio zibethinus
Duzib168G1527 Durio zibethinus
Duzib187G0766 Durio zibethinus
Duzib187G1090 Durio zibethinus
ECA240G4826 Erigeron canadensis
EL10Ac2g02533 Beta vulgaris
Eucgr.C01080 Eucalyptus grandis
Eucgr.C02860 Eucalyptus grandis
Eucgr.L02512 Eucalyptus grandis
FAN19G2525 Fragaria x ananassa
FAN20G3150 Fragaria x ananassa
FAN23G0655 Fragaria x ananassa
FAN26G0699 Fragaria x ananassa
FAN26G2978 Fragaria x ananassa
FAN27G2877 Fragaria x ananassa
FAN28G2603 Fragaria x ananassa
FvH4_1g05450 Fragaria vesca
FvH4_2g30190 Fragaria vesca
Glyma.04G072600 Glycine max
Glyma.05G012500 Glycine max
Glyma.06G073800 Glycine max
Glyma.17G120600 Glycine max
Gohir.A05G010900 Gossypium hirsutum
Gohir.A07G003400 Gossypium hirsutum
Gohir.A08G237200 Gossypium hirsutum
Gohir.A13G203900 Gossypium hirsutum
Gohir.D05G011600 Gossypium hirsutum
Gohir.D07G003800 Gossypium hirsutum
Gohir.D08G257800 Gossypium hirsutum
Gohir.D13G209200 Gossypium hirsutum
Gorai.001G003500 Gossypium raimondii
Gorai.004G274800 Gossypium raimondii
Gorai.009G011900 Gossypium raimondii
Gorai.013G238300 Gossypium raimondii
GSVIVG01015438001 Vitis vinifera
GSVIVG01035728001 Vitis vinifera
HanXRQChr03g0062011 Helianthus annuus
HanXRQChr09g0240461 Helianthus annuus
HanXRQChr10g0317411 Helianthus annuus
HanXRQChr12g0355871 Helianthus annuus
Haze_21626 Corylus avellana
Hma1.2p1_0175F.1_g077310 Hydrangea macrophylla
HPP92_005547 Vanilla planifolia
HPP92_009102 Vanilla planifolia
Hund03001 Selenicereus undatus
Lalb_Chr07g0178641 Lupinus albus
Lalb_Chr12g0197611 Lupinus albus
Lalb_Chr13g0302291 Lupinus albus
Lalb_Chr23g0269011 Lupinus albus
Lj1g0001915 Lotus japonicus
Lj1g0024566 Lotus japonicus
Lj7A711G44 Lonicera japonica
Lsat_1_v5_gn_5_99801 Lactuca sativa
Lsat_1_v5_gn_7_43001 Lactuca sativa
Lsat_1_v5_gn_8_94581 Lactuca sativa
Manes.16G068400 Manihot esculenta
Manes.16G068500 Manihot esculenta
Mapoly0012s0193 Marchantia polymorpha
MBI01_g10036_MAGBIO Magnolia biondii
MBI04_g20759_MAGBIO Magnolia biondii
MD02G1062600 Malus domestica
MD15G1114900 Malus domestica
MD15G1190400 Malus domestica
Medtr3g108090 Medicago truncatula
Medtr3g108100 Medicago truncatula
MELO3C003665.2 Cucumis melo
Migut.A00271 Erythranthe guttata
Migut.E01502 Erythranthe guttata
MSTRG.11741 Avicennia marina
MSTRG.14002 Avicennia marina
MSTRG.1648 Avicennia marina
Nitab4.5_0000042g0010 Nicotiana tabacum
Nitab4.5_0000066g0030 Nicotiana tabacum
Nitab4.5_0000125g0110 Nicotiana tabacum
Nitab4.5_0012266g0010 Nicotiana tabacum
Nn2g11832 Nelumbo nucifera
Nn4g23128 Nelumbo nucifera
Nn8g39271 Nelumbo nucifera
Oeu010201.1 Olea europaea
Oeu014657.1 Olea europaea
Oeu019415.1 Olea europaea
Oeu031564.1 Olea europaea
Oeu037592.1 Olea europaea
Oeu045175.1 Olea europaea
Os02g0208650 Oryza sativa ssp. japonica
Os05g0179800 Oryza sativa ssp. japonica
Peaxi162Scf00105g01219 Petunia axillaris
Peaxi162Scf00256g00913 Petunia axillaris
Peaxi162Scf00552g00311 Petunia axillaris
PGR031G2332 Punica granatum
PGR044G2133 Punica granatum
PGSC0003DMG400014501 Solanum tuberosum
PGSC0003DMG400027440 Solanum tuberosum
PGSC0003DMG401014502 Solanum tuberosum
Phvul.003G176400 Phaseolus vulgaris
Phvul.009G098300 Phaseolus vulgaris
Potri.006G246300 Populus trichocarpa
Potri.018G034800 Populus trichocarpa
Pp3c11_18960 Physcomitrium patens
Pp3c7_3330 Physcomitrium patens
Prupe.1G466300 Prunus persica
Prupe.7G226700 Prunus persica
Psat5g026800 Pisum sativum
Psat5g026840 Pisum sativum
PSO063G7370 Papaver somniferum
PSO782G3209 Papaver somniferum
QL02p086204 Quercus lobata
QL12p031218 Quercus lobata
RcHm_v2.0_Chr2g0091121 Rosa chinensis
RcHm_v2.0_Chr6g0312721 Rosa chinensis
Rhsim02G0187000 Rhododendron simsii
Rhsim03G0245200 Rhododendron simsii
Sabra18G0035600 Salix brachista
SalBow4G3032 Salvia bowleyana
SalBow8G1639 Salvia bowleyana
Sc06g0000680 Simmondsia chinensis
Sed0014074 Sechium edule
Sed0025801 Sechium edule
SEGI_02251 Sequoiadendron giganteum
SEGI_05752 Sequoiadendron giganteum
SGA_v2.0_scaffold163G38096 Striga asiatica
SGA_v2.0_scaffold169G38633 Striga asiatica
SMO141G0271 Selaginella moellendorffii
SMO196G0021 Selaginella moellendorffii
SMO234G0064 Selaginella moellendorffii
Solyc05g018490.3 Solanum lycopersicum
Solyc08g067880.4 Solanum lycopersicum
Solyc08g150138.1 Solanum lycopersicum
Sopen05g015460 Solanum pennellii
Sopen08g021800 Solanum pennellii
Sopen08g021810 Solanum pennellii
TAR383G0480 Trochodendron aralioides
TAR624G0315 Trochodendron aralioides
TAR626G0862 Trochodendron aralioides
TAR626G1623 Trochodendron aralioides
TAR636G3129 Trochodendron aralioides
THA.LOC104803776 Tarenaya hassleriana
THA.LOC104803817 Tarenaya hassleriana
Thecc.09G115400 Theobroma cacao
Thecc.09G115500 Theobroma cacao
Thhalv10000247m.g Eutrema salsugineum
Thhalv10025336m.g Eutrema salsugineum
TPR.G34682 Trifolium pratense
TPR.G34689 Trifolium pratense
TWI32G1161 Tripterygium wilfordii
TWI34G1255 Tripterygium wilfordii
TWI63G0040 Tripterygium wilfordii
unitig_0.g2813 Utricularia gibba
unitig_32.g10925 Utricularia gibba
unitig_747.g21878 Utricularia gibba
unitig_747.g21879 Utricularia gibba
unitig_748.g8208 Utricularia gibba
vmacro05448 Vaccinium macrocarpon
vmacro06191 Vaccinium macrocarpon
VMungo1215G0338 Vigna mungo
VMungo1309G1769 Vigna mungo
Zm00001eb122280 Zea mays
Zm00001eb201420 Zea mays
Zm00001eb300980 Zea mays
Zm00001eb337030 Zea mays
Zm00001eb347000 Zea mays

User provided reference genes

Program Settings