Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p31530 Brassica napus
A09p01180 Brassica napus
A10p28060 Brassica napus
Aa31LG3G17840 Aethionema arabicum
Aa31LG5G1360 Aethionema arabicum
Aa31sc2117G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.116 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.978 Anthoceros agrestis
Actinidia06597 Actinidia chinensis
Actinidia20056 Actinidia chinensis
Actinidia20961 Actinidia chinensis
Ah.06g188520 Amaranthus hybridus
AL6G19470 Arabidopsis lyrata
AL6G51700 Arabidopsis lyrata
Aqoxy2G02408 Aquilegia oxysepala
Aqoxy6G00211 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.06HUX3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2HG3UE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3HC2CW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.898NT1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BAG6CY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DM3640 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EK7H7E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VT8BG2 Arachis hypogaea
AT4G01650 Arabidopsis thaliana
AT5G08720 Arabidopsis thaliana
ATR0584G276 Amborella trichopoda
ATR0584G284 Amborella trichopoda
ATR0796G107 Amborella trichopoda
Atru.chr4.1131 Acer truncatum
Atru.chr5.835 Acer truncatum
Atru.chr5.836 Acer truncatum
AUR62000559 Chenopodium quinoa
AUR62006910 Chenopodium quinoa
BcaB01g02125 Brassica carinata
BcaB01g02375 Brassica carinata
BcaB08g37230 Brassica carinata
BcaC01g06808 Brassica carinata
BcaC04g24081 Brassica carinata
BolC3t16125H Brassica oleracea
BolC9t53060H Brassica oleracea
BolC9t59574H Brassica oleracea
BraA03t12332Z Brassica rapa
BraA09t35788Z Brassica rapa
BraA10t44855Z Brassica rapa
C03p38510 Brassica napus
C09p01260 Brassica napus
C09p68260 Brassica napus
CAN.G179.25 Capsicum annuum
CAN.G610.52 Capsicum annuum
CANSAT01G0469 Cannabis sativa
CARHR204290 Cardamine hirsuta
CARHR250020 Cardamine hirsuta
Carub.0006s0769 Capsella rubella
Carub.0006s3556 Capsella rubella
Ca_10229_v3 Cicer arietinum L.
Ca_17607_v3 Cicer arietinum L.
CBR_g31139 Chara braunii
CBR_g48801 Chara braunii
Cc01_g21690 Coffea canephora
Cc11_g01240 Coffea canephora
Cc11_g02030 Coffea canephora
Cc11_g02090 Coffea canephora
Cc11_g02630 Coffea canephora
CDE02G1036 Ceratophyllum demersum
CDE02G1715 Ceratophyllum demersum
CDE05G1031 Ceratophyllum demersum
CDE08G0854 Ceratophyllum demersum
CDE11G0220 Ceratophyllum demersum
Cfa002121 Carpinus fangiana
Cfa002122 Carpinus fangiana
Cfa004926 Carpinus fangiana
Ciclev10000418m.g Citrus clementina
Ciclev10021459m.g Citrus clementina
CiPaw.07G075900 Carya illinoinensis
CiPaw.07G076000 Carya illinoinensis
CiPaw.08G081500 Carya illinoinensis
ClCG04G001200 Citrullus lanatus
ClCG06G004130 Citrullus lanatus
COL.COLO4_12118 Corchorus olitorius
COL.COLO4_23100 Corchorus olitorius
COL.COLO4_23101 Corchorus olitorius
Cpa.g.sc37.46 Carica papaya
Cpa.g.sc57.47 Carica papaya
Cre02.g107750 Chlamydomonas reinhardtii
CsaV3_4G031190 Cucumis sativus L.
CsaV3_6G000300 Cucumis sativus L.
CSS0001259 Camellia sinensis var. sinensis
CSS0002822 Camellia sinensis var. sinensis
CSS0004310 Camellia sinensis var. sinensis
CSS0006873 Camellia sinensis var. sinensis
CSS0008833 Camellia sinensis var. sinensis
CSS0033070 Camellia sinensis var. sinensis
CSS0038308 Camellia sinensis var. sinensis
DCAR_000693 Daucus carota
DCAR_018238 Daucus carota
Dinv07258 Davidia involucrata
Dinv07259 Davidia involucrata
Dinv33183 Davidia involucrata
Duzib187G0031 Durio zibethinus
ECA248G3631 Erigeron canadensis
EL10Ac4g09659 Beta vulgaris
Eucgr.I00052 Eucalyptus grandis
Eucgr.I00094 Eucalyptus grandis
Eucgr.K00552 Eucalyptus grandis
FAN16G0380 Fragaria x ananassa
FAN16G0459 Fragaria x ananassa
FAN19G0602 Fragaria x ananassa
FAN23G1996 Fragaria x ananassa
FAN23G3081 Fragaria x ananassa
FAN25G3668 Fragaria x ananassa
FAN26G1490 Fragaria x ananassa
FAN26G3134 Fragaria x ananassa
FAN28G0491 Fragaria x ananassa
FvH4_1g26070 Fragaria vesca
FvH4_3g12600 Fragaria vesca
FvH4_3g32461 Fragaria vesca
Glyma.04G207200 Glycine max
Glyma.05G195900 Glycine max
Glyma.06G158400 Glycine max
Glyma.08G003500 Glycine max
Glyma.10G139600 Glycine max
Gohir.A07G132500 Gossypium hirsutum
Gohir.A08G122100 Gossypium hirsutum
Gohir.A09G006100 Gossypium hirsutum
Gohir.D07G136800 Gossypium hirsutum
Gohir.D08G143500 Gossypium hirsutum
Gohir.D09G005200 Gossypium hirsutum
Gorai.001G148800 Gossypium raimondii
Gorai.004G147900 Gossypium raimondii
Gorai.006G006800 Gossypium raimondii
GSVIVG01022377001 Vitis vinifera
GSVIVG01028225001 Vitis vinifera
HanXRQChr03g0087641 Helianthus annuus
HanXRQChr10g0286511 Helianthus annuus
Haze_05165 Corylus avellana
Haze_05166 Corylus avellana
Haze_16323 Corylus avellana
Haze_16324 Corylus avellana
Hma1.2p1_0619F.1_g190350 Hydrangea macrophylla
Hma1.2p1_0619F.1_g190360 Hydrangea macrophylla
Hma1.2p1_0619F.1_g190380 Hydrangea macrophylla
HPP92_021910 Vanilla planifolia
HPP92_025044 Vanilla planifolia
Hund08525 Selenicereus undatus
Hund15465 Selenicereus undatus
Hund21782 Selenicereus undatus
Lalb_Chr02g0147271 Lupinus albus
Lalb_Chr12g0202891 Lupinus albus
Lalb_Chr23g0272731 Lupinus albus
Lj1A109G43 Lonicera japonica
Lj4g0024429 Lotus japonicus
Lj5g0028161 Lotus japonicus
Lj6g0004942 Lotus japonicus
Lsat_1_v5_gn_1_80920 Lactuca sativa
Lsat_1_v5_gn_9_7181 Lactuca sativa
Manes.01G236200 Manihot esculenta
Manes.12G083900 Manihot esculenta
Mapoly0125s0022 Marchantia polymorpha
Mapoly0148s0001 Marchantia polymorpha
MBI18_g28920_MAGBIO Magnolia biondii
MD05G1249400 Malus domestica
MD09G1291800 Malus domestica
Medtr1g085550 Medicago truncatula
Medtr8g094800 Medicago truncatula
MELO3C008996.2 Cucumis melo
MELO3C021224.2 Cucumis melo
Migut.K00221 Erythranthe guttata
Migut.L00269 Erythranthe guttata
MSTRG.26210 Avicennia marina
MSTRG.3600 Avicennia marina
Nitab4.5_0000066g0010 Nicotiana tabacum
Nitab4.5_0002103g0100 Nicotiana tabacum
Nitab4.5_0002512g0060 Nicotiana tabacum
Nn1g08395 Nelumbo nucifera
Oeu042316.1 Olea europaea
Oeu052791.1 Olea europaea
Os01g0971700 Oryza sativa ssp. japonica
Os03g0837900 Oryza sativa ssp. japonica
Peaxi162Scf00076g01057 Petunia axillaris
Peaxi162Scf00309g00511 Petunia axillaris
PGR119G1937 Punica granatum
PGR142G0326 Punica granatum
PGSC0003DMG400000842 Solanum tuberosum
PGSC0003DMG400012080 Solanum tuberosum
PGSC0003DMG401014557 Solanum tuberosum
PGSC0003DMG402014557 Solanum tuberosum
Phvul.002G276400 Phaseolus vulgaris
Phvul.007G207900 Phaseolus vulgaris
Phvul.009G151900 Phaseolus vulgaris
Potri.002G185100 Populus trichocarpa
Potri.005G070700 Populus trichocarpa
Potri.014G110600 Populus trichocarpa
Pp3c16_9330 Physcomitrium patens
Pp3c6_14570 Physcomitrium patens
PRCOL_00005747 Prasinoderma coloniale
Prupe.3G000900 Prunus persica
Prupe.4G114800 Prunus persica
Psat6g157840 Pisum sativum
Psat7g043240 Pisum sativum
PSO170G1422 Papaver somniferum
PSO210G3595 Papaver somniferum
PSO528G0279 Papaver somniferum
PSO761G0232 Papaver somniferum
QL01p049838 Quercus lobata
QL09p023342 Quercus lobata
QL09p037436 Quercus lobata
QL93p2009_0021 Quercus lobata
RcHm_v2.0_Chr3g0485541 Rosa chinensis
RcHm_v2.0_Chr5g0020561 Rosa chinensis
Rhsim10G0121300 Rhododendron simsii
Rhsim10G0129800 Rhododendron simsii
Sabra02G0130800 Salix brachista
Sabra05G0057500 Salix brachista
Sabra14G0081400 Salix brachista
SalBow1G1534 Salvia bowleyana
SalBow7G4483 Salvia bowleyana
Sc06g0005350 Simmondsia chinensis
Sc17g0000080 Simmondsia chinensis
Sed0011819 Sechium edule
Sed0017127 Sechium edule
SEGI_17807 Sequoiadendron giganteum
SEGI_22974 Sequoiadendron giganteum
SEGI_23203 Sequoiadendron giganteum
SEGI_39457 Sequoiadendron giganteum
SGA_v2.0_scaffold12G06079 Striga asiatica
SGA_v2.0_scaffold244G44338 Striga asiatica
SMO230G0109 Selaginella moellendorffii
SMO339G0046 Selaginella moellendorffii
Solyc01g068620.4 Solanum lycopersicum
Solyc05g009080.4 Solanum lycopersicum
Sopen01g030550 Solanum pennellii
Sopen05g004810 Solanum pennellii
Sp6g01540 Schrenkiella parvula
Sp6g34150 Schrenkiella parvula
TAR365G0686 Trochodendron aralioides
TAR381G0271 Trochodendron aralioides
TAR381G0660 Trochodendron aralioides
TAR381G1378 Trochodendron aralioides
THA.LOC104801332 Tarenaya hassleriana
THA.LOC104801335 Tarenaya hassleriana
THA.LOC104815911 Tarenaya hassleriana
Thecc.01G142600 Theobroma cacao
Thecc.01G327600 Theobroma cacao
Thhalv10015845m.g Eutrema salsugineum
Thhalv10028817m.g Eutrema salsugineum
TPR.G29561 Trifolium pratense
TPR.G3014 Trifolium pratense
TPR.G37380 Trifolium pratense
TWI14G0813 Tripterygium wilfordii
TWI23G0423 Tripterygium wilfordii
TWI31G0641 Tripterygium wilfordii
TWI79G0542 Tripterygium wilfordii
unitig_0.g2672 Utricularia gibba
unitig_748.g7215 Utricularia gibba
unitig_899.g14455 Utricularia gibba
vmacro05322 Vaccinium macrocarpon
vmacro12772 Vaccinium macrocarpon
VMungo0251G1864 Vigna mungo
VMungo0720G0036 Vigna mungo
VMungo1309G1997 Vigna mungo
Zm00001eb063890 Zea mays
Zm00001eb139840 Zea mays

User provided reference genes

Program Settings