Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p09940 Brassica napus
A03p50820 Brassica napus
A04p26760 Brassica napus
A06p45700 Brassica napus
Aa31LG6G620 Aethionema arabicum
Aa31LG9G15220 Aethionema arabicum
Aa31LG9G6140 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3068 Anthoceros agrestis
Actinidia03375 Actinidia chinensis
Actinidia09192 Actinidia chinensis
Actinidia14805 Actinidia chinensis
Actinidia25965 Actinidia chinensis
Ah.07g200410 Amaranthus hybridus
Ah.12g055080 Amaranthus hybridus
AL4G31220 Arabidopsis lyrata
AL507U10010 Arabidopsis lyrata
AL5G37190 Arabidopsis lyrata
AL7G36640 Arabidopsis lyrata
AL8G11590 Arabidopsis lyrata
Aqoxy3G02344 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AQ061J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EBYZ1J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I3QUYC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J4IBP0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JXDN17 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SB0HK4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U2SLBT Arachis hypogaea
AT2G35210 Arabidopsis thaliana
AT3G55910 Arabidopsis thaliana
AT4G17890 Arabidopsis thaliana
AT5G46750 Arabidopsis thaliana
ATR0665G524 Amborella trichopoda
Atru.chr6.1701 Acer truncatum
Atru.chr6.1721 Acer truncatum
AUR62007295 Chenopodium quinoa
AUR62018710 Chenopodium quinoa
BcaB06g28807 Brassica carinata
BcaC02g07729 Brassica carinata
BcaC02g07731 Brassica carinata
BcaC06g31450 Brassica carinata
BcaC06g33610 Brassica carinata
BcaC06g34351 Brassica carinata
BcaC07g38105 Brassica carinata
BcaC09g51590 Brassica carinata
BcaNung00046 Brassica carinata
BcaNung06204 Brassica carinata
BolC1t01135H Brassica oleracea
BolC4t27899H Brassica oleracea
BolC7t43545H Brassica oleracea
BolC7t45431H Brassica oleracea
BolC8t48527H Brassica oleracea
BraA01t00938Z Brassica rapa
BraA03t14171Z Brassica rapa
BraA04t18180Z Brassica rapa
BraA06t27439Z Brassica rapa
C01p11720 Brassica napus
C03p04060 Brassica napus
C04p64160 Brassica napus
C07p30050 Brassica napus
C07p49210 Brassica napus
CAN.G1216.6 Capsicum annuum
CAN.G1644.1 Capsicum annuum
CAN.G1644.10 Capsicum annuum
CAN.G26.25 Capsicum annuum
CAN.G298.9 Capsicum annuum
CAN.G524.35 Capsicum annuum
CAN.G849.13 Capsicum annuum
CANSAT21G1855 Cannabis sativa
CARHR012390 Cardamine hirsuta
CARHR129370 Cardamine hirsuta
CARHR174750 Cardamine hirsuta
CARHR224610 Cardamine hirsuta
Carub.0004s1690 Capsella rubella
Carub.0007s2347 Capsella rubella
Carub.0008s0117 Capsella rubella
Ca_22644_v3 Cicer arietinum L.
Ca_22645_v3 Cicer arietinum L.
Ca_29712_v3 Cicer arietinum L.
CBR_g48348 Chara braunii
Cc08_g02800 Coffea canephora
Cc08_g02810 Coffea canephora
CDE02G4800 Ceratophyllum demersum
CDE11G0152 Ceratophyllum demersum
CDE12G0916 Ceratophyllum demersum
Cfa012442 Carpinus fangiana
Cfa024811 Carpinus fangiana
Ciclev10011983m.g Citrus clementina
Ciclev10013257m.g Citrus clementina
CiPaw.11G093700 Carya illinoinensis
CiPaw.12G064100 Carya illinoinensis
ClCG09G011910 Citrullus lanatus
ClCG10G001580 Citrullus lanatus
COL.COLO4_17028 Corchorus olitorius
Cpa.g.c38992 Carica papaya
Cpa.g.sc90.50 Carica papaya
Cre17.g715350 Chlamydomonas reinhardtii
CsaV3_3G001690 Cucumis sativus L.
CsaV3_3G049140 Cucumis sativus L.
CSS0016596 Camellia sinensis var. sinensis
CSS0031017 Camellia sinensis var. sinensis
CSS0036363 Camellia sinensis var. sinensis
DCAR_005634 Daucus carota
DCAR_008267 Daucus carota
DCAR_024962 Daucus carota
DCAR_032209 Daucus carota
Dinv15711 Davidia involucrata
Dinv23570 Davidia involucrata
Dinv23612 Davidia involucrata
Dinv25217 Davidia involucrata
Dinv28960 Davidia involucrata
Duzib068G0098 Durio zibethinus
Duzib205G1750 Durio zibethinus
ECA240G1797 Erigeron canadensis
ECA248G0576 Erigeron canadensis
EL10Ac5g12116 Beta vulgaris
Eucgr.D02202 Eucalyptus grandis
FAN04G1146 Fragaria x ananassa
FAN08G0866 Fragaria x ananassa
FAN13G2715 Fragaria x ananassa
FAN18G0316 Fragaria x ananassa
FvH4_5g22130 Fragaria vesca
Glyma.01G096300 Glycine max
Glyma.08G271700 Glycine max
Gohir.A03G000600 Gossypium hirsutum
Gohir.A09G199000 Gossypium hirsutum
Gohir.A11G030600 Gossypium hirsutum
Gohir.A12G208100 Gossypium hirsutum
Gohir.D03G171600 Gossypium hirsutum
Gohir.D09G193300 Gossypium hirsutum
Gohir.D11G029300 Gossypium hirsutum
Gohir.D12G210700 Gossypium hirsutum
Gorai.003G182200 Gossypium raimondii
Gorai.006G216800 Gossypium raimondii
Gorai.007G031900 Gossypium raimondii
Gorai.008G226200 Gossypium raimondii
GSVIVG01013155001 Vitis vinifera
HanXRQChr03g0084261 Helianthus annuus
HanXRQChr13g0414101 Helianthus annuus
Haze_08225 Corylus avellana
Hma1.2p1_0303F.1_g119090 Hydrangea macrophylla
Hma1.2p1_1063F.1_g253590 Hydrangea macrophylla
Hma1.2p1_1794F.1_g302660 Hydrangea macrophylla
HPP92_012819 Vanilla planifolia
Hund11235 Selenicereus undatus
Hund14396 Selenicereus undatus
Lalb_Chr05g0216051 Lupinus albus
Lalb_Chr05g0228891 Lupinus albus
Lalb_Chr09g0325641 Lupinus albus
Lalb_Chr09g0334691 Lupinus albus
Lalb_Chr16g0381341 Lupinus albus
Lalb_Chr16g0381351 Lupinus albus
Lj2C238T11 Lonicera japonica
Lj2C239G12 Lonicera japonica
Lj4g0023696 Lotus japonicus
Lj4g0026282 Lotus japonicus
Lsat_1_v5_gn_6_79321 Lactuca sativa
Manes.15G181201 Manihot esculenta
Manes.17G010700 Manihot esculenta
Mapoly0001s0506 Marchantia polymorpha
Mapoly0063s0097 Marchantia polymorpha
MBI18_g07567_MAGBIO Magnolia biondii
MCO06G224 Micromonas commoda
MD00G1122000 Malus domestica
MD00G1122100 Malus domestica
MD00G1183400 Malus domestica
MD06G1034600 Malus domestica
Medtr8g067080 Medicago truncatula
Medtr8g067090 Medicago truncatula
Medtr8g471110 Medicago truncatula
Medtr8g471120 Medicago truncatula
MELO3C003413.2 Cucumis melo
MELO3C013850.2 Cucumis melo
MELO3C028678.2 Cucumis melo
MELO3C033117.2 Cucumis melo
Migut.A01010 Erythranthe guttata
Nitab4.5_0000804g0180 Nicotiana tabacum
Nitab4.5_0001765g0040 Nicotiana tabacum
Nitab4.5_0003437g0020 Nicotiana tabacum
Nitab4.5_0007629g0040 Nicotiana tabacum
Nn1g08037 Nelumbo nucifera
Nn2g14814 Nelumbo nucifera
Nn6g33584 Nelumbo nucifera
Nn7g37613 Nelumbo nucifera
Nn8g40290 Nelumbo nucifera
Oeu006255.1 Olea europaea
Oeu006257.1 Olea europaea
Oeu039360.2 Olea europaea
Os03g0854100 Oryza sativa ssp. japonica
Os10g0574800 Oryza sativa ssp. japonica
Peaxi162Scf00045g00031 Petunia axillaris
Peaxi162Scf00460g00015 Petunia axillaris
PGR031G1083 Punica granatum
PGSC0003DMG400001155 Solanum tuberosum
PGSC0003DMG400017515 Solanum tuberosum
Phvul.002G141400 Phaseolus vulgaris
Phvul.003G285000 Phaseolus vulgaris
Potri.001G142100 Populus trichocarpa
Potri.003G092300 Populus trichocarpa
Pp3c1_20430 Physcomitrium patens
Pp3c2_23830 Physcomitrium patens
PRCOL_00000619 Prasinoderma coloniale
Prupe.5G035300 Prunus persica
Psat0s2661g0080 Pisum sativum
Psat4g121160 Pisum sativum
PSO063G0454 Papaver somniferum
PSO675G6323 Papaver somniferum
PSO717G0008 Papaver somniferum
PSO782G5434 Papaver somniferum
RcHm_v2.0_Chr7g0209771 Rosa chinensis
Rhsim07G0127400 Rhododendron simsii
Rhsim11G0015100 Rhododendron simsii
Sabra01G0110500 Salix brachista
Sabra03G0061700 Salix brachista
SalBow6G7251 Salvia bowleyana
Sc01g0007410 Simmondsia chinensis
Sc22g0001520 Simmondsia chinensis
Sed0004634 Sechium edule
Sed0004867 Sechium edule
Sed0011678 Sechium edule
Sed0015856 Sechium edule
SEGI_14134 Sequoiadendron giganteum
SEGI_22628 Sequoiadendron giganteum
SEGI_22747 Sequoiadendron giganteum
SEGI_22989 Sequoiadendron giganteum
SEGI_34506 Sequoiadendron giganteum
SGA_v2.0_scaffold198G41099 Striga asiatica
SGA_v2.0_scaffold36G14313 Striga asiatica
SMO164G0005 Selaginella moellendorffii
SMO298G0017 Selaginella moellendorffii
Solyc08g005070.4 Solanum lycopersicum
Solyc08g076920.3 Solanum lycopersicum
Sopen08g001090 Solanum pennellii
Sopen08g025490 Solanum pennellii
Sp2g11560 Schrenkiella parvula
Sp4g17430 Schrenkiella parvula
Sp7g16230 Schrenkiella parvula
SpUn0036_0050 Schrenkiella parvula
TAR374G1691 Trochodendron aralioides
TAR375G0261 Trochodendron aralioides
TAR629G0804 Trochodendron aralioides
TAR636G2406 Trochodendron aralioides
THA.LOC104806707 Tarenaya hassleriana
THA.LOC104807947 Tarenaya hassleriana
THA.LOC104812831 Tarenaya hassleriana
THA.LOC104827759 Tarenaya hassleriana
Thecc.03G227300 Theobroma cacao
Thhalv10000903m.g Eutrema salsugineum
Thhalv10014377m.g Eutrema salsugineum
Thhalv10016748m.g Eutrema salsugineum
Thhalv10025323m.g Eutrema salsugineum
TPR.G28244 Trifolium pratense
TPR.G28246 Trifolium pratense
TWI15G0324 Tripterygium wilfordii
TWI60G0924 Tripterygium wilfordii
TWI81G0900 Tripterygium wilfordii
unitig_22.g5504 Utricularia gibba
vmacro00328 Vaccinium macrocarpon
vmacro14170 Vaccinium macrocarpon
VMungo0251G1300 Vigna mungo
VMungo1215G0898 Vigna mungo
Zm00001eb024360 Zea mays
Zm00001eb064850 Zea mays
Zm00001eb210570 Zea mays
Zm00001eb390370 Zea mays

User provided reference genes

Program Settings