Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p32180 Brassica napus
A05p02940 Brassica napus
A08p25470 Brassica napus
A09p37540 Brassica napus
Aa31LG1G24280 Aethionema arabicum
Aa31LG6G11030 Aethionema arabicum
Actinidia05665 Actinidia chinensis
Actinidia07612 Actinidia chinensis
Actinidia16579 Actinidia chinensis
Actinidia23667 Actinidia chinensis
Actinidia39487 Actinidia chinensis
Ah.01g003890 Amaranthus hybridus
Ah.09g237690 Amaranthus hybridus
AL1G42140 Arabidopsis lyrata
AL409U10020 Arabidopsis lyrata
AL4G40830 Arabidopsis lyrata
Aqoxy1G02267 Aquilegia oxysepala
Aqoxy4G00575 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.58QJX0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L7J8I4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q7UNS1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YBER36 Arachis hypogaea
AT1G28520 Arabidopsis thaliana
AT2G42400 Arabidopsis thaliana
ATR0602G091 Amborella trichopoda
Atru.chr10.1769 Acer truncatum
Atru.chr6.2846 Acer truncatum
AUR62014889 Chenopodium quinoa
AUR62024758 Chenopodium quinoa
AUR62031095 Chenopodium quinoa
AUR62037692 Chenopodium quinoa
BcaB03g12099 Brassica carinata
BcaB06g29242 Brassica carinata
BcaB07g32471 Brassica carinata
BcaC01g00066 Brassica carinata
BcaC02g07242 Brassica carinata
BcaC05g26900 Brassica carinata
BolC3t19792H Brassica oleracea
BolC4t21992H Brassica oleracea
BolC4t28466H Brassica oleracea
BolC5t31470H Brassica oleracea
BraA04t18672Z Brassica rapa
BraA05t19285Z Brassica rapa
BraA08t34498Z Brassica rapa
BraA09t39264Z Brassica rapa
C03p75330 Brassica napus
C04p03570 Brassica napus
C04p69670 Brassica napus
C05p27500 Brassica napus
CAN.G1345.1 Capsicum annuum
CAN.G345.9 Capsicum annuum
CAN.G361.22 Capsicum annuum
CAN.G79.84 Capsicum annuum
CANSAT35G1113 Cannabis sativa
CANSAT64G0320 Cannabis sativa
CARHR028000 Cardamine hirsuta
CARHR137460 Cardamine hirsuta
Carub.0001s2698 Capsella rubella
Carub.0004s2481 Capsella rubella
Ca_18612_v3 Cicer arietinum L.
Ca_18911_v3 Cicer arietinum L.
Ca_30602_v3 Cicer arietinum L.
Cc02_g14130 Coffea canephora
Cc02_g14150 Coffea canephora
CDE10G0511 Ceratophyllum demersum
Cfa000542 Carpinus fangiana
Cfa014674 Carpinus fangiana
Ciclev10015064m.g Citrus clementina
Ciclev10015076m.g Citrus clementina
CiPaw.03G183100 Carya illinoinensis
CiPaw.09G065300 Carya illinoinensis
CiPaw.10G054000 Carya illinoinensis
ClCG01G023370 Citrullus lanatus
ClCG02G010180 Citrullus lanatus
COL.COLO4_04710 Corchorus olitorius
COL.COLO4_31398 Corchorus olitorius
Cpa.g.sc50.3 Carica papaya
Cpa.g.sc7.6 Carica papaya
CsaV3_2G034550 Cucumis sativus L.
CsaV3_4G028820 Cucumis sativus L.
CsaV3_6G050500 Cucumis sativus L.
CSS0006305 Camellia sinensis var. sinensis
CSS0028837 Camellia sinensis var. sinensis
DCAR_004034 Daucus carota
DCAR_004035 Daucus carota
DCAR_004728 Daucus carota
DCAR_006153 Daucus carota
DCAR_014845 Daucus carota
DCAR_023477 Daucus carota
DCAR_028038 Daucus carota
DCAR_028854 Daucus carota
Dinv17368 Davidia involucrata
Dinv19992 Davidia involucrata
Dinv40617 Davidia involucrata
Duzib160G0771 Durio zibethinus
Duzib192G1031 Durio zibethinus
Duzib235G1392 Durio zibethinus
Duzib248G0956 Durio zibethinus
ECA234G1733 Erigeron canadensis
ECA248G1484 Erigeron canadensis
EL10Ac8g20452 Beta vulgaris
EL10Ac9g20844 Beta vulgaris
Eucgr.A01885 Eucalyptus grandis
Eucgr.E03208 Eucalyptus grandis
Eucgr.G01448 Eucalyptus grandis
FAN02G0539 Fragaria x ananassa
FAN05G3598 Fragaria x ananassa
FAN09G4745 Fragaria x ananassa
FAN11G2826 Fragaria x ananassa
FAN14G2808 Fragaria x ananassa
FAN16G2568 Fragaria x ananassa
FAN21G2712 Fragaria x ananassa
FAN25G0788 Fragaria x ananassa
FvH4_3g08390 Fragaria vesca
FvH4_6g26850 Fragaria vesca
Glyma.06G285800 Glycine max
Glyma.07G202700 Glycine max
Glyma.10G068900 Glycine max
Glyma.12G120100 Glycine max
Glyma.13G152236 Glycine max
Glyma.13G172900 Glycine max
Gohir.A03G153800 Gossypium hirsutum
Gohir.A05G157900 Gossypium hirsutum
Gohir.A06G134200 Gossypium hirsutum
Gohir.D02G176800 Gossypium hirsutum
Gohir.D05G160600 Gossypium hirsutum
Gohir.D06G135300 Gossypium hirsutum
Gohir.D06G209350 Gossypium hirsutum
Gorai.005G198500 Gossypium raimondii
Gorai.009G165800 Gossypium raimondii
Gorai.010G157200 Gossypium raimondii
Gorai.010G243300 Gossypium raimondii
GSVIVG01020649001 Vitis vinifera
GSVIVG01021137001 Vitis vinifera
HanXRQChr04g0116911 Helianthus annuus
HanXRQChr16g0518611 Helianthus annuus
HanXRQChr17g0561791 Helianthus annuus
Haze_06341 Corylus avellana
Haze_13268 Corylus avellana
Hma1.2p1_1465F.1_g285330 Hydrangea macrophylla
HPP92_006300 Vanilla planifolia
HPP92_006307 Vanilla planifolia
HPP92_027389 Vanilla planifolia
Hund00994 Selenicereus undatus
Hund21203 Selenicereus undatus
Lalb_Chr01g0005871 Lupinus albus
Lalb_Chr03g0029721 Lupinus albus
Lalb_Chr15g0089621 Lupinus albus
Lalb_Chr16g0384121 Lupinus albus
Lj1A1199T46 Lonicera japonica
Lj3g0002758 Lotus japonicus
Lj4g0003465 Lotus japonicus
Lsat_1_v5_gn_1_120060 Lactuca sativa
Lsat_1_v5_gn_4_51560 Lactuca sativa
Lsat_1_v5_gn_7_21941 Lactuca sativa
Manes.12G092900 Manihot esculenta
Manes.16G033500 Manihot esculenta
Manes.17G050800 Manihot esculenta
MBI06_g34193_MAGBIO Magnolia biondii
MBI06_g41963_MAGBIO Magnolia biondii
MBI06_g45593_MAGBIO Magnolia biondii
MD05G1308300 Malus domestica
MD09G1241600 Malus domestica
MD10G1287300 Malus domestica
MD17G1234200 Malus domestica
MD17G1234300 Malus domestica
Medtr2g014870 Medicago truncatula
Medtr4g079240 Medicago truncatula
Medtr4g088125 Medicago truncatula
MELO3C007248.2 Cucumis melo
MELO3C019321.2 Cucumis melo
Migut.H01462 Erythranthe guttata
Migut.M01093 Erythranthe guttata
MSTRG.14717 Avicennia marina
MSTRG.15838 Avicennia marina
MSTRG.7370 Avicennia marina
Nitab4.5_0002114g0160 Nicotiana tabacum
Nitab4.5_0005016g0050 Nicotiana tabacum
Nitab4.5_0005043g0010 Nicotiana tabacum
Nitab4.5_0008221g0020 Nicotiana tabacum
Nn1g06368 Nelumbo nucifera
Oeu001095.1 Olea europaea
Os01g0753000 Oryza sativa ssp. japonica
Os05g0515700 Oryza sativa ssp. japonica
Peaxi162Scf00248g00012 Petunia axillaris
Peaxi162Scf00468g10023 Petunia axillaris
PGR042G0499 Punica granatum
PGR042G0797 Punica granatum
PGSC0003DMG400022817 Solanum tuberosum
PGSC0003DMG400031757 Solanum tuberosum
Phvul.003G073700 Phaseolus vulgaris
Phvul.006G180700 Phaseolus vulgaris
Phvul.011G115600 Phaseolus vulgaris
Potri.004G050900 Populus trichocarpa
Potri.011G060000 Populus trichocarpa
Potri.013G123100 Populus trichocarpa
Potri.019G092800 Populus trichocarpa
Pp3c16_6910 Physcomitrium patens
Pp3c5_21130 Physcomitrium patens
Pp3c6_11070 Physcomitrium patens
Prupe.3G127200 Prunus persica
Prupe.4G054500 Prunus persica
Psat0s5928g0040 Pisum sativum
Psat2g125200 Pisum sativum
Psat7g001520 Pisum sativum
Psat7g116840 Pisum sativum
Psat7g137160 Pisum sativum
PSO063G3672 Papaver somniferum
PSO541G1430 Papaver somniferum
PSO782G4519 Papaver somniferum
QL05p043464 Quercus lobata
QL08p040887 Quercus lobata
RcHm_v2.0_Chr2g0128221 Rosa chinensis
RcHm_v2.0_Chr5g0009511 Rosa chinensis
Rhsim02G0136600 Rhododendron simsii
Rhsim13G0181600 Rhododendron simsii
Sabra04G0032000 Salix brachista
Sabra11G0041400 Salix brachista
Sabra13G0102400 Salix brachista
Sabra14G0014200 Salix brachista
Sabra19G0105900 Salix brachista
SalBow7G2812 Salvia bowleyana
SalBow7G3349 Salvia bowleyana
SalBow8G0965 Salvia bowleyana
Sc05g0007390 Simmondsia chinensis
Sc21g0003580 Simmondsia chinensis
Sed0002213 Sechium edule
Sed0005904 Sechium edule
Sed0023621 Sechium edule
SEGI_32648 Sequoiadendron giganteum
SEGI_36817 Sequoiadendron giganteum
SGA_v2.0_scaffold16G07654 Striga asiatica
SHI53192 Sapria himalayana
Solyc02g077450.3 Solanum lycopersicum
Solyc10g008880.3 Solanum lycopersicum
Sopen02g022360 Solanum pennellii
Sopen10g004670 Solanum pennellii
Sp1g24770 Schrenkiella parvula
Sp4g24550 Schrenkiella parvula
TAR627G0182 Trochodendron aralioides
TAR627G0853 Trochodendron aralioides
TAR629G1094 Trochodendron aralioides
THA.LOC104812623 Tarenaya hassleriana
THA.LOC104820577 Tarenaya hassleriana
THA.LOC104822232 Tarenaya hassleriana
Thecc.01G350500 Theobroma cacao
Thecc.02G188500 Theobroma cacao
Thecc.06G178900 Theobroma cacao
Thhalv10007498m.g Eutrema salsugineum
Thhalv10016635m.g Eutrema salsugineum
TPR.G11674 Trifolium pratense
TPR.G27871 Trifolium pratense
TPR.G30410 Trifolium pratense
TWI38G1481 Tripterygium wilfordii
TWI63G0755 Tripterygium wilfordii
unitig_578.g16437 Utricularia gibba
unitig_8.g4628 Utricularia gibba
vmacro03895 Vaccinium macrocarpon
vmacro15935 Vaccinium macrocarpon
VMungo0251G1328 Vigna mungo
VMungo0540G0020 Vigna mungo
VMungo0540G0803 Vigna mungo
VMungo1127G2156 Vigna mungo
Zm00001eb133730 Zea mays
Zm00001eb153520 Zea mays
Zm00001eb263050 Zea mays
Zm00001eb292900 Zea mays
Zm00001eb370850 Zea mays
Zm00001eb379720 Zea mays

User provided reference genes

Program Settings