Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p25410 Brassica napus
A05p05900 Brassica napus
A07p25480 Brassica napus
A09p53460 Brassica napus
Aa31LG10G15540 Aethionema arabicum
Aa31LG1G27360 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.1305 Anthoceros agrestis
Actinidia03129 Actinidia chinensis
Actinidia10036 Actinidia chinensis
Actinidia20898 Actinidia chinensis
Actinidia34133 Actinidia chinensis
Ah.13g068790 Amaranthus hybridus
AL4G45170 Arabidopsis lyrata
AL5G43710 Arabidopsis lyrata
Aqoxy7G00293 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.49DERF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6YUK9L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.72EBQP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8QB15U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A3GT1T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HWH8UE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JHU363 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LDA2L2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P9SQBF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T02BE4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea
AT2G45950 Arabidopsis thaliana
AT3G61415 Arabidopsis thaliana
ATR0680G050 Amborella trichopoda
Atru.chr1.416 Acer truncatum
Atru.chr1.417 Acer truncatum
Atru.chr5.504 Acer truncatum
AUR62004365 Chenopodium quinoa
AUR62015948 Chenopodium quinoa
AUR62021154 Chenopodium quinoa
AUR62022574 Chenopodium quinoa
AUR62031339 Chenopodium quinoa
BcaB01g03244 Brassica carinata
BcaB02g07378 Brassica carinata
BcaC01g05102 Brassica carinata
BcaC02g12165 Brassica carinata
BcaC07g40638 Brassica carinata
BcaC08g45122 Brassica carinata
BolC3t15381H Brassica oleracea
BolC4t22306H Brassica oleracea
BolC6t37915H Brassica oleracea
BolC8t51209H Brassica oleracea
BraA03t11760Z Brassica rapa
BraA05t19554Z Brassica rapa
BraA07t30192Z Brassica rapa
BraA09t40771Z Brassica rapa
C03p30310 Brassica napus
C04p06840 Brassica napus
C06p27440 Brassica napus
C08p36270 Brassica napus
CAN.G1005.3 Capsicum annuum
CAN.G527.3 Capsicum annuum
CANSAT21G1637 Cannabis sativa
CARHR141220 Cardamine hirsuta
CARHR171760 Cardamine hirsuta
Carub.0004s2864 Capsella rubella
Carub.0005s2811 Capsella rubella
Ca_02990_v3 Cicer arietinum L.
Ca_07926_v3 Cicer arietinum L.
Ca_23628_v3 Cicer arietinum L.
CBR_g8901 Chara braunii
Cc02_g02670 Coffea canephora
Cc02_g38110 Coffea canephora
CDE04G2626 Ceratophyllum demersum
CDE06G0547 Ceratophyllum demersum
Cfa003912 Carpinus fangiana
Cfa015155 Carpinus fangiana
Cfa016264 Carpinus fangiana
Ciclev10005270m.g Citrus clementina
Ciclev10020595m.g Citrus clementina
CiPaw.01G062400 Carya illinoinensis
CiPaw.02G031700 Carya illinoinensis
CiPaw.05G263900 Carya illinoinensis
COL.COLO4_28042 Corchorus olitorius
Cpa.g.sc107.78 Carica papaya
Cpa.g.sc11.11 Carica papaya
CsaV3_5G001180 Cucumis sativus L.
CSS0001076 Camellia sinensis var. sinensis
CSS0027799 Camellia sinensis var. sinensis
DCAR_001086 Daucus carota
DCAR_006934 Daucus carota
DCAR_007448 Daucus carota
DCAR_007449 Daucus carota
DCAR_008894 Daucus carota
DCAR_020262 Daucus carota
DCAR_027761 Daucus carota
Dinv32490 Davidia involucrata
Dinv35228 Davidia involucrata
Dinv43822 Davidia involucrata
Duzib133G0151 Durio zibethinus
Duzib138G1934 Durio zibethinus
ECA236G0440 Erigeron canadensis
ECA238G3430 Erigeron canadensis
EL10Ac1g00409 Beta vulgaris
EL10Ac3g05597 Beta vulgaris
Eucgr.K00278 Eucalyptus grandis
FAN01G1196 Fragaria x ananassa
FAN01G3142 Fragaria x ananassa
FAN03G0326 Fragaria x ananassa
FAN03G0533 Fragaria x ananassa
FAN03G1854 Fragaria x ananassa
FAN06G0110 Fragaria x ananassa
FAN06G3716 Fragaria x ananassa
FAN06G4076 Fragaria x ananassa
FAN06G4107 Fragaria x ananassa
FAN06G4293 Fragaria x ananassa
FAN10G0263 Fragaria x ananassa
FAN10G0827 Fragaria x ananassa
FAN10G1975 Fragaria x ananassa
FAN10G2332 Fragaria x ananassa
FvH4_7g14420 Fragaria vesca
FvH4_7g29890 Fragaria vesca
Glyma.03G008500 Glycine max
Glyma.07G069800 Glycine max
Glyma.09G136000 Glycine max
Glyma.09G208600 Glycine max
Glyma.09G258900 Glycine max
Glyma.16G181500 Glycine max
Glyma.18G233700 Glycine max
Gohir.A08G131500 Gossypium hirsutum
Gohir.A11G089200 Gossypium hirsutum
Gohir.D08G153000 Gossypium hirsutum
Gohir.D11G093500 Gossypium hirsutum
Gorai.004G158900 Gossypium raimondii
Gorai.007G099900 Gossypium raimondii
GSVIVG01026939001 Vitis vinifera
GSVIVG01028906001 Vitis vinifera
HanXRQChr04g0121111 Helianthus annuus
HanXRQChr14g0462351 Helianthus annuus
Haze_00016 Corylus avellana
Haze_15519 Corylus avellana
Hund04769 Selenicereus undatus
Hund11733 Selenicereus undatus
Lalb_Chr04g0257001 Lupinus albus
Lalb_Chr10g0096881 Lupinus albus
Lalb_Chr17g0339551 Lupinus albus
Lalb_Chr19g0130721 Lupinus albus
Lj1A1001G59 Lonicera japonica
Lj1g0004586 Lotus japonicus
Lj3g0011404 Lotus japonicus
Lj8C21G6 Lonicera japonica
Lsat_1_v5_gn_1_112060 Lactuca sativa
Lsat_1_v5_gn_2_132761 Lactuca sativa
Lsat_1_v5_gn_3_56581 Lactuca sativa
Lsat_1_v5_gn_4_156441 Lactuca sativa
Lsat_1_v5_gn_7_4761 Lactuca sativa
Lsat_1_v5_gn_7_71500 Lactuca sativa
Lsat_1_v5_gn_8_122700 Lactuca sativa
Lsat_1_v5_gn_8_122820 Lactuca sativa
Lsat_1_v5_gn_9_36540 Lactuca sativa
Manes.06G150000 Manihot esculenta
Manes.14G024500 Manihot esculenta
Mapoly0006s0066 Marchantia polymorpha
MBI18_g29421_MAGBIO Magnolia biondii
MD01G1062100 Malus domestica
MD01G1062600 Malus domestica
MD01G1062700 Malus domestica
MD01G1205300 Malus domestica
MD07G1273900 Malus domestica
MD07G1274100 Malus domestica
Medtr2g100825 Medicago truncatula
Medtr2g100830 Medicago truncatula
Medtr3g061700 Medicago truncatula
Medtr6g053560 Medicago truncatula
Medtr6g053620 Medicago truncatula
Medtr7g036780 Medicago truncatula
Medtr7g077810 Medicago truncatula
Medtr8g007185 Medicago truncatula
Medtr8g007195 Medicago truncatula
Medtr8g007205 Medicago truncatula
Medtr8g007220 Medicago truncatula
Medtr8g030670 Medicago truncatula
MELO3C005828.2 Cucumis melo
Migut.B01761 Erythranthe guttata
Migut.N01448 Erythranthe guttata
Migut.N01449 Erythranthe guttata
MSTRG.20839 Avicennia marina
MSTRG.28224 Avicennia marina
Nitab4.5_0000080g0150 Nicotiana tabacum
Nitab4.5_0000084g0160 Nicotiana tabacum
Nitab4.5_0001951g0030 Nicotiana tabacum
Nitab4.5_0004439g0020 Nicotiana tabacum
Nn1g01547 Nelumbo nucifera
Nn6g33404 Nelumbo nucifera
Oeu004109.1 Olea europaea
Oeu010617.1 Olea europaea
Oeu022597.1 Olea europaea
Oeu042119.1 Olea europaea
Os03g0107000 Oryza sativa ssp. japonica
Peaxi162Scf00444g00422 Petunia axillaris
Peaxi162Scf00848g00215 Petunia axillaris
PGR142G3012 Punica granatum
PGSC0003DMG400015800 Solanum tuberosum
PGSC0003DMG400029928 Solanum tuberosum
Phvul.004G113200 Phaseolus vulgaris
Phvul.008G062000 Phaseolus vulgaris
Phvul.010G020600 Phaseolus vulgaris
Phvul.010G099600 Phaseolus vulgaris
Potri.002G160600 Populus trichocarpa
Potri.012G143500 Populus trichocarpa
Potri.014G085400 Populus trichocarpa
Potri.015G146500 Populus trichocarpa
Prupe.2G171100 Prunus persica
Prupe.2G297900 Prunus persica
Psat0s344g0080 Pisum sativum
Psat1g121600 Pisum sativum
Psat3g108080 Pisum sativum
Psat4g156040 Pisum sativum
PSO339G1347 Papaver somniferum
PSO339G1920 Papaver somniferum
PSO339G3851 Papaver somniferum
PSO339G5896 Papaver somniferum
PSO339G6624 Papaver somniferum
PSO478G4261 Papaver somniferum
PSO513G0020 Papaver somniferum
PSO513G0077 Papaver somniferum
PSO513G0141 Papaver somniferum
PSO513G0164 Papaver somniferum
PSO782G2254 Papaver somniferum
QL08p048301 Quercus lobata
RcHm_v2.0_Chr1g0355761 Rosa chinensis
RcHm_v2.0_Chr1g0377851 Rosa chinensis
Rhsim03G0188300 Rhododendron simsii
Rhsim09G0199100 Rhododendron simsii
Sabra12G0107700 Salix brachista
Sabra14G0061800 Salix brachista
Sabra15G0155700 Salix brachista
SalBow3G0162 Salvia bowleyana
SalBow5G1949 Salvia bowleyana
SalBow5G2881 Salvia bowleyana
Sc23g0002860 Simmondsia chinensis
Sc25g0000650 Simmondsia chinensis
Sed0002306 Sechium edule
Sed0023699 Sechium edule
SGA_v2.0_scaffold115G32191 Striga asiatica
SGA_v2.0_scaffold11G05666 Striga asiatica
SGA_v2.0_scaffold250G45019 Striga asiatica
SGA_v2.0_scaffold4G02309 Striga asiatica
SHI13767 Sapria himalayana
SMO236G0030 Selaginella moellendorffii
Solyc03g025420.3 Solanum lycopersicum
Solyc06g036070.3 Solanum lycopersicum
Sopen03g004260 Solanum pennellii
Sopen06g011820 Solanum pennellii
Sp4g28020 Schrenkiella parvula
Sp5g01980 Schrenkiella parvula
TAR374G0481 Trochodendron aralioides
TAR375G0720 Trochodendron aralioides
Thecc.01G358300 Theobroma cacao
Thecc.03G180200 Theobroma cacao
Thhalv10001775m.g Eutrema salsugineum
Thhalv10006063m.g Eutrema salsugineum
TPR.G29206 Trifolium pratense
TPR.G32152 Trifolium pratense
TPR.G7367 Trifolium pratense
TWI14G0896 Tripterygium wilfordii
TWI14G1018 Tripterygium wilfordii
TWI59G0468 Tripterygium wilfordii
unitig_8.g3800 Utricularia gibba
vmacro06653 Vaccinium macrocarpon
vmacro09826 Vaccinium macrocarpon
VMungo0331G1747 Vigna mungo
VMungo0464G1316 Vigna mungo
Zm00001eb000550 Zea mays
Zm00001eb171100 Zea mays
Zm00001eb404320 Zea mays
Zm00001eb413820 Zea mays

User provided reference genes

Program Settings