Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p37200 Brassica napus
A06p06930 Brassica napus
A08p36740 Brassica napus
A10p03140 Brassica napus
Aa31LG1G8620 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2548 Anthoceros agrestis
Actinidia08181 Actinidia chinensis
Ah.08g223590 Amaranthus hybridus
Ah.09g232260 Amaranthus hybridus
Ah.16g104080 Amaranthus hybridus
AL1G14420 Arabidopsis lyrata
AL1G21030 Arabidopsis lyrata
AL3G21950 Arabidopsis lyrata
AL3G22350 Arabidopsis lyrata
AL3G23770 Arabidopsis lyrata
Aqoxy1G00533 Aquilegia oxysepala
Aqoxy3G02133 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.GX8Q9J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UDT6NA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VUX1YY Arachis hypogaea
AT1G10300 Arabidopsis thaliana
AT1G50920 Arabidopsis thaliana
AT3G23860 Arabidopsis thaliana
ATR0057G063 Amborella trichopoda
ATR0684G220 Amborella trichopoda
ATR0763G231 Amborella trichopoda
ATR0772G044 Amborella trichopoda
Atru.chr11.1457 Acer truncatum
Atru.chr11.1490 Acer truncatum
Atru.chr3.2732 Acer truncatum
AUR62015502 Chenopodium quinoa
AUR62039750 Chenopodium quinoa
AUR62039964 Chenopodium quinoa
BcaB01g02212 Brassica carinata
BcaB03g13475 Brassica carinata
BcaB05g23926 Brassica carinata
BcaB06g25538 Brassica carinata
BcaB07g30312 Brassica carinata
BcaC05g24904 Brassica carinata
BcaC05g24905 Brassica carinata
BcaC05g24913 Brassica carinata
BcaC05g24914 Brassica carinata
BcaC05g29286 Brassica carinata
BcaC07g36887 Brassica carinata
BcaC09g48263 Brassica carinata
BolC5t29072H Brassica oleracea
BolC5t29592H Brassica oleracea
BolC5t34234H Brassica oleracea
BolC8t46950H Brassica oleracea
BraA05t22517Z Brassica rapa
BraA06t23215Z Brassica rapa
BraA06t23909Z Brassica rapa
BraA08t35576Z Brassica rapa
BraA10t42587Z Brassica rapa
C05p02910 Brassica napus
C05p08410 Brassica napus
C05p55650 Brassica napus
C08p01410 Brassica napus
CAN.G209.22 Capsicum annuum
CAN.G700.14 Capsicum annuum
CANSAT01G0379 Cannabis sativa
CANSAT78G2062 Cannabis sativa
CARHR004090 Cardamine hirsuta
CARHR010400 Cardamine hirsuta
CARHR010410 Cardamine hirsuta
CARHR086700 Cardamine hirsuta
Carub.0001s0396 Capsella rubella
Carub.0001s0970 Capsella rubella
Carub.0003s1007 Capsella rubella
Carub.0003s1148 Capsella rubella
Ca_01773_v3 Cicer arietinum L.
Ca_02573_v3 Cicer arietinum L.
Ca_03002_v3 Cicer arietinum L.
Ca_03099_v3 Cicer arietinum L.
Ca_03148_v3 Cicer arietinum L.
Ca_03472_v3 Cicer arietinum L.
Ca_04000_v3 Cicer arietinum L.
Ca_08854_v3 Cicer arietinum L.
Ca_11778_v3 Cicer arietinum L.
Ca_14167_v3 Cicer arietinum L.
Ca_14361_v3 Cicer arietinum L.
Ca_17040_v3 Cicer arietinum L.
Ca_17168_v3 Cicer arietinum L.
Ca_19739_v3 Cicer arietinum L.
Ca_21033_v3 Cicer arietinum L.
Ca_22364_v3 Cicer arietinum L.
Ca_22847_v3 Cicer arietinum L.
Ca_23029_v3 Cicer arietinum L.
Ca_23031_v3 Cicer arietinum L.
Ca_25736_v3 Cicer arietinum L.
Ca_26148_v3 Cicer arietinum L.
Ca_26248_v3 Cicer arietinum L.
Ca_26778_v3 Cicer arietinum L.
Ca_27198_v3 Cicer arietinum L.
Ca_27381_v3 Cicer arietinum L.
Ca_27854_v3 Cicer arietinum L.
CBR_g77869 Chara braunii
Cc00_g01510 Coffea canephora
Cc11_g14270 Coffea canephora
CDE04G3381 Ceratophyllum demersum
CDE12G0187 Ceratophyllum demersum
Cfa010283 Carpinus fangiana
Cfa022185 Carpinus fangiana
Ciclev10004477m.g Citrus clementina
Ciclev10006517m.g Citrus clementina
CiPaw.06G008400 Carya illinoinensis
CiPaw.13G161500 Carya illinoinensis
ClCG08G017240 Citrullus lanatus
COL.COLO4_09008 Corchorus olitorius
COL.COLO4_33612 Corchorus olitorius
Cpa.g.c38405.1 Carica papaya
Cpa.g.c38405.2 Carica papaya
Cpa.g.c44337.1 Carica papaya
Cpa.g.c44337.2 Carica papaya
Cpa.g.sc84.61 Carica papaya
Cre10.g459500 Chlamydomonas reinhardtii
CsaV3_2G025380 Cucumis sativus L.
CSS0041556 Camellia sinensis var. sinensis
DCAR_007102 Daucus carota
Dinv24902 Davidia involucrata
Dinv30999 Davidia involucrata
Dinv31104 Davidia involucrata
Dinv39632 Davidia involucrata
Duzib168G1518 Durio zibethinus
Duzib170G0594 Durio zibethinus
ECA246G4618 Erigeron canadensis
EL10Ac7g16892 Beta vulgaris
EL10Ac8g18494 Beta vulgaris
Eucgr.F03998 Eucalyptus grandis
FAN02G3956 Fragaria x ananassa
FAN05G4108 Fragaria x ananassa
FAN09G0126 Fragaria x ananassa
FAN09G2849 Fragaria x ananassa
FAN11G1940 Fragaria x ananassa
FAN14G2513 Fragaria x ananassa
FAN16G0533 Fragaria x ananassa
FAN21G3969 Fragaria x ananassa
FAN23G0096 Fragaria x ananassa
FvH4_3g28930 Fragaria vesca
FvH4_6g37740 Fragaria vesca
Glyma.09G128100 Glycine max
Glyma.11G133600 Glycine max
Glyma.12G057800 Glycine max
Gohir.A02G105700 Gossypium hirsutum
Gohir.A12G115100 Gossypium hirsutum
Gohir.D03G078100 Gossypium hirsutum
Gohir.D12G118600 Gossypium hirsutum
Gorai.003G086000 Gossypium raimondii
Gorai.008G128300 Gossypium raimondii
GSVIVG01025272001 Vitis vinifera
GSVIVG01034588001 Vitis vinifera
HanXRQChr11g0323631 Helianthus annuus
HanXRQChr15g0476651 Helianthus annuus
Haze_00984 Corylus avellana
Haze_01417 Corylus avellana
Haze_23131 Corylus avellana
Haze_26385 Corylus avellana
HPP92_002934 Vanilla planifolia
HPP92_002935 Vanilla planifolia
HPP92_002936 Vanilla planifolia
HPP92_004842 Vanilla planifolia
HPP92_004879 Vanilla planifolia
Hund11875 Selenicereus undatus
Lalb_Chr03g0026331 Lupinus albus
Lalb_Chr19g0138101 Lupinus albus
Lj2g0010803 Lotus japonicus
Lj4g0022659 Lotus japonicus
Lj4P468T8 Lonicera japonica
Lj5g0005383 Lotus japonicus
Lj8C580T7 Lonicera japonica
Lsat_1_v5_gn_1_11801 Lactuca sativa
Lsat_1_v5_gn_1_11821 Lactuca sativa
Lsat_1_v5_gn_8_160141 Lactuca sativa
Lsat_1_v5_gn_8_160220 Lactuca sativa
Manes.06G164900 Manihot esculenta
Manes.14G002300 Manihot esculenta
Mapoly0056s0118 Marchantia polymorpha
MBI17_g08352_MAGBIO Magnolia biondii
MCO16G373 Micromonas commoda
MD06G1031200 Malus domestica
MD11G1222700 Malus domestica
MD16G1277600 Malus domestica
Medtr2g078050 Medicago truncatula
Medtr2g082240 Medicago truncatula
Medtr8g018150 Medicago truncatula
MELO3C010735.2 Cucumis melo
Migut.L01444 Erythranthe guttata
MSTRG.620 Avicennia marina
MSTRG.7874 Avicennia marina
Nitab4.5_0000592g0070 Nicotiana tabacum
Nitab4.5_0004196g0030 Nicotiana tabacum
Nitab4.5_0009394g0010 Nicotiana tabacum
Nn1g08184 Nelumbo nucifera
Nn5g27606 Nelumbo nucifera
Oeu025445.1 Olea europaea
Oeu028550.1 Olea europaea
Os06g0195900 Oryza sativa ssp. japonica
Os07g0110200 Oryza sativa ssp. japonica
Peaxi162Scf00592g00003 Petunia axillaris
PGR119G0499 Punica granatum
PGSC0003DMG400026818 Solanum tuberosum
PGSC0003DMG400030186 Solanum tuberosum
Phvul.011G059700 Phaseolus vulgaris
Potri.001G258900 Populus trichocarpa
Potri.009G054000 Populus trichocarpa
Pp3c20_4830 Physcomitrium patens
Pp3c23_20710 Physcomitrium patens
PRCOL_00004008 Prasinoderma coloniale
Prupe.1G572400 Prunus persica
Prupe.4G247400 Prunus persica
Prupe.5G045700 Prunus persica
Prupe.5G045900 Prunus persica
Prupe.5G046000 Prunus persica
Prupe.6G149400 Prunus persica
Psat5g237960 Pisum sativum
Psat5g297560 Pisum sativum
PSO170G2022 Papaver somniferum
PSO455G0171 Papaver somniferum
PSO478G3145 Papaver somniferum
PSO761G0496 Papaver somniferum
QL02p019362 Quercus lobata
QL06p021110 Quercus lobata
QL10p058875 Quercus lobata
RcHm_v2.0_Chr3g0491451 Rosa chinensis
RcHm_v2.0_Chr3g0491461 Rosa chinensis
RcHm_v2.0_Chr5g0051831 Rosa chinensis
RcHm_v2.0_Chr5g0051911 Rosa chinensis
RcHm_v2.0_Chr5g0051921 Rosa chinensis
Rhsim04G0188800 Rhododendron simsii
Sabra09G0039400 Salix brachista
Sabra10G0027900 Salix brachista
SalBow2G0269 Salvia bowleyana
SalBow2G2645 Salvia bowleyana
Sc09g0008300 Simmondsia chinensis
Sed0022629 Sechium edule
Sed0022998 Sechium edule
SEGI_13678 Sequoiadendron giganteum
SGA_v2.0_scaffold166G38342 Striga asiatica
SGA_v2.0_scaffold82G26205 Striga asiatica
SHI29761 Sapria himalayana
SMO147G0287 Selaginella moellendorffii
Solyc01g081010.4 Solanum lycopersicum
Solyc07g053730.4 Solanum lycopersicum
Sopen01g032590 Solanum pennellii
Sopen07g027710 Solanum pennellii
Sp1g03550 Schrenkiella parvula
TAR365G0446 Trochodendron aralioides
TAR365G0488 Trochodendron aralioides
TAR365G0773 Trochodendron aralioides
TAR374G0038 Trochodendron aralioides
TAR376G0056 Trochodendron aralioides
THA.LOC104799100 Tarenaya hassleriana
THA.LOC104824560 Tarenaya hassleriana
Thecc.05G189100 Theobroma cacao
Thecc.09G232800 Theobroma cacao
Thhalv10006811m.g Eutrema salsugineum
Thhalv10009840m.g Eutrema salsugineum
Thhalv10009939m.g Eutrema salsugineum
Thhalv10021429m.g Eutrema salsugineum
Thhalv10021432m.g Eutrema salsugineum
TPR.G2153 Trifolium pratense
TPR.G36771 Trifolium pratense
TPR.G9217 Trifolium pratense
TWI34G1958 Tripterygium wilfordii
unitig_749.g14333 Utricularia gibba
vmacro19268 Vaccinium macrocarpon
vmacro20354 Vaccinium macrocarpon
VMungo1127G1321 Vigna mungo
Zm00001eb278540 Zea mays
Zm00001eb373990 Zea mays

User provided reference genes

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